Diapositive 1

1
Phaseolus vulgaris B4 locus 410 Kb contig
David_ Supplemental Figure S3
1
At3g01490 protein kinase
2
At5g40270 metal-dependent phosphohydrolase 2
3
Unknown protein At1g63930
Gm chr 13 27,096,894-27,149,916 bp
4
Calcium homeostasis regulator-like protein CHoR1
1
Gm chr 19 703,347-861,494 bp
Chr 13 44 Mb
50 Kb
11
CNL-B1
12
CLN-B2
13
CNL-B3
14
CNL-B4
15
CNL-B5
16
CNL-B6
Sub-cluster C
100 Kb
CNL-B7
17
Chr 19 50 Mb
1
At3g01490 protein kinase
18
CNL-B8
1
At3g01490 protein kinase
A (8 Khipu elements)
3
Hypothetical protein At5g27990
B (3 Khipu elements)
2
At5g40270 metal-dependant phosphohydrolase
3
At5g27990 unknown protein
4
Calcium homeostasis regulator-like protein
19
CNL-B9
53 kb
4
Calcium homeostasis regulator-like protein CHoR1
20
CNL-B10
5
5
Formate dehydrogenase
Formate dehydrogenase
150 Kb
CNL-B11
21
6
Formate dehydrogenase
6
Farnesyl transferase
7
Farnesyl transferase
7
MtN24
23
NADH dehydrogenase
8
MtN24
9
Quinone oxidoreductase like protein
C (29 Khipu elements)
D (3 Khipu elements)
10
Quinone oxidoreductase like protein
11
Quinone oxidoreductase like protein
12
Quinone oxidoreductase like protein
25
Hypothetical protein AY341443
26
Basic blue protein
27
Basic blue protein
13
Quinone oxidoreductase like protein
200 Kb
28
Formate dehydrogenase 9
29
Formate dehydrogenase 9
14
Kinesin light chain-like protein
158 kb
Formate dehydrogenase 9
30
15
Carboxylic ester hydrolase
Farnesyl transferase 4
31
16
L-Aspartate oxidase
17
At3g 27930 Unknown protein
32
MtN24 7
Gm chr 5 8,372,893-8,464,947 bp
33
At3g21600 unknown protein. 6
18
Serine type peptidase
34
Quinone oxidoreductase like protein 21
35
Quinone oxidoreductase-like protein 21
19
Carbonic anhydrase 2
250 Kb
36
20
Expressed protein similar to At3g27880
Chr 5 42 Mb
37
38
21
ATPase 8
22
CNL_Gm19
39
23
ATPase
40
24
AT5g14720 protein kinase family
41
1
Quinone oxydoreductase-like protein
300 Kb
E (3 Khipu elements)
42
2
Kinesin light chain-like protein
43
CNL-B12
F (5 Khipu elements)
44
CNL-B13
45
CNL-B14
350 Kb
Sub-cluster B
92 kb
46
CNL-B15
47
CNL-B16
CNL-B17
48
G (6 Khipu elements)
H (22 tandem repeats)
400 Kb
49
CNL-B18
50
ATPase, E1-E2 type 21
Supplemental Figure S3. Sequence comparison
between the Phaseolus vulgaris BAT93 B4-410 kb
contig (central position) and syntenic regions
identified on the Glycine max genome (assembly
version 1.01) (http//soybase.org/gbrowse/cgi-bin/
gbrowse/gmax1.01/). Two homoeologous regions
syntenic with the Pv B4 locus have been
identified the Gm H1 (homeologous 1) Pv B4
syntenic region (left of the scheme) and the Gm
H2 (homeologous 2) Pv B4 syntenic region (right
of the scheme). The Gm H1 Pv B4 syntenic region
is located on the chromosome 19 (coordinates
703,347-861,494 bp) and the Gm H2 Pv B4 syntenic
region is divided on chromosome 13 (coordinates
27,096,894-27,149,916 bp) and chromosome 5
(coordinates 8,372,893-8,464,947 bp). The
location of Gm H1 and H2 Pv B4 syntenic regions
according soybean chromosomes (1.01 assembly) is
indicated by black dotted lines. Genes 10 and 11
of Gm chr5, are separated by 2 Mb according to
the 1.01 version of soybean genome, but by only
1.7 kb in the 7 X Whole Genome Shotgun (WGS)
(http//www.phytozome.net/soybean.php). Due to
some uncertainties suspected in the 1.01 assembly
in this region of Gm chr 5 (Steven Cannon,
unpublished data), we have represented an
intergenic region of 1.7 kb between genes 10 and
11 (7X WGS information). Yellow lines indicate
significant homology matches between predicted
genes. Blue lines indicate significant homology
matches between CNL genes. The scheme is
represented to scale.