56 Swissmodel PPTs View free & download

Homology modeling with SWISSMODEL PowerPoint PPT Presentation

Homology modeling with SWISSMODEL - ... effects are mediated by the oestrogen receptor (ER) a ligand-inducible ... Oestrogen receptor. Two isoforms of ER are known: ER- a and ER ...

... effects are mediated by the oestrogen receptor (ER) a ligand-inducible ... Oestrogen receptor. Two isoforms of ER are known: ER- a and ER ...

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Foldinghome and SWISSMODEL PowerPoint PPT Presentation

Foldinghome and SWISSMODEL - Quaternary structure is comprised of several tertiary structures ... Program is a screen saver. Uses packages. AMBER, TINKER and GROMAS. Ensemble Dynamics Method ...

Quaternary structure is comprised of several tertiary structures ... Program is a screen saver. Uses packages. AMBER, TINKER and GROMAS. Ensemble Dynamics Method ...

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Bioinformatics Tools PowerPoint PPT Presentation

Bioinformatics Tools - Bioinformatics Tools Protein Structure Homology Modeling: SWISS-MODEL http://swissmodel.expasy.org/ Submit a FASTA sequence (known or unknown) Swiss-Model conducts ...

Bioinformatics Tools Protein Structure Homology Modeling: SWISS-MODEL http://swissmodel.expasy.org/ Submit a FASTA sequence (known or unknown) Swiss-Model conducts ...

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Homology Modelling PowerPoint PPT Presentation

Homology Modelling - Tutorial Homology Modelling A Brief Introduction to Homology Modeling Sequence-Structure-Function Relationships Proteins of similar sequences fold into similar ...

Tutorial Homology Modelling A Brief Introduction to Homology Modeling Sequence-Structure-Function Relationships Proteins of similar sequences fold into similar ...

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NMR vs. Crystallography for CHEM 645 PowerPoint PPT Presentation

NMR vs. Crystallography for CHEM 645 - Crystallography vs. NMR advantage/disadvantages. Experimental difficulties ... need good crystals for crystallography. need 13C and 15N label for NMR ...

Crystallography vs. NMR advantage/disadvantages. Experimental difficulties ... need good crystals for crystallography. need 13C and 15N label for NMR ...

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The Cell, Central Dogma and Human Genome Project PowerPoint PPT Presentation

The Cell, Central Dogma and Human Genome Project - The Cell, Central Dogma and. Human Genome Project. A Eukaryotic Cell ... (How Perl saved the Human Genome project?) Major Database and Data collection methods: ...

The Cell, Central Dogma and. Human Genome Project. A Eukaryotic Cell ... (How Perl saved the Human Genome project?) Major Database and Data collection methods: ...

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Alexei Adzhubei PowerPoint PPT Presentation

Alexei Adzhubei - Topic 4. Alexei Adzhubei. Current public, searchable databases with protein models ... models from PDB, compatible with PDB, built using the MDB dictionary (mmCIF and ...

Topic 4. Alexei Adzhubei. Current public, searchable databases with protein models ... models from PDB, compatible with PDB, built using the MDB dictionary (mmCIF and ...

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Bioinformatics how to PowerPoint PPT Presentation

Bioinformatics how to - Title: PowerPoint Presentation - Bioinformatics how to predict protein structure using comparative modeling Author: Adam Godzik Last modified by

Title: PowerPoint Presentation - Bioinformatics how to predict protein structure using comparative modeling Author: Adam Godzik Last modified by

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Modern Methods in Drug Discovery PowerPoint PPT Presentation

Modern Methods in Drug Discovery - ... Komponentenauswahl f r das High Throughput Screening ... Modelling Theorie Docking ... 10,000 in clinical trial virtual library 100,000 ...

... Komponentenauswahl f r das High Throughput Screening ... Modelling Theorie Docking ... 10,000 in clinical trial virtual library 100,000 ...

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Proteina chemical view PowerPoint PPT Presentation

Proteina chemical view - Picture from http://www.expasy.org/swissmod/course/text/chapter1.htm ... Zig-zag backbone, side-chains opposite directions , ~30 /residue twist, mostly antiparallel ...

Picture from http://www.expasy.org/swissmod/course/text/chapter1.htm ... Zig-zag backbone, side-chains opposite directions , ~30 /residue twist, mostly antiparallel ...

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Predicting Protein Structure: PowerPoint PPT Presentation

Predicting Protein Structure: - Predicting Protein Structure: Comparative Modeling (homology modeling)

Predicting Protein Structure: Comparative Modeling (homology modeling)

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Lab 9.3a: Homology Modeling PowerPoint PPT Presentation

Lab 9.3a: Homology Modeling - Sequence alignment is the single most important step in homology modeling. ... LIG. Complete: Add ligands, substrates etc. to model. Analyse: Interpret and conclude ...

Sequence alignment is the single most important step in homology modeling. ... LIG. Complete: Add ligands, substrates etc. to model. Analyse: Interpret and conclude ...

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Protein dynamics PowerPoint PPT Presentation

Protein dynamics - Thermodynamic equilibrium native state has lowest free energy. Reference ... Rosetta (Baker's lab) Touchstone (Skolnick) 14. Need for Low Resolution Approaches ...

Thermodynamic equilibrium native state has lowest free energy. Reference ... Rosetta (Baker's lab) Touchstone (Skolnick) 14. Need for Low Resolution Approaches ...

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Protein%20Secondary%20Structure PowerPoint PPT Presentation

Protein%20Secondary%20Structure - 'Perhaps the most remarkable features of the molecule are its ... Protein interior: Hydrophobic core. Main chain folds also into interior, but it is highly polar ...

'Perhaps the most remarkable features of the molecule are its ... Protein interior: Hydrophobic core. Main chain folds also into interior, but it is highly polar ...

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Protein structure prediction PowerPoint PPT Presentation

Protein structure prediction - Laws of physics amino-acid sequence = protein structure. Computes potential energy functions. ... Step 4: Open PDB-file. Rejoice! Study your brand new model ...

Laws of physics amino-acid sequence = protein structure. Computes potential energy functions. ... Step 4: Open PDB-file. Rejoice! Study your brand new model ...

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Genomic%20translations%20of%20Fenugreek%20(Trigonella%20foenum-graecum)%20to%20derive%20its%20proteomic%20insights PowerPoint PPT Presentation

Genomic%20translations%20of%20Fenugreek%20(Trigonella%20foenum-graecum)%20to%20derive%20its%20proteomic%20insights - Genomic translations of Fenugreek (Trigonella foenum-graecum) to derive its proteomic insights Geetika Jethra, Priya Gupta, Jyoti Mihra, Alka Pawar and Sharda Choudhary

Genomic translations of Fenugreek (Trigonella foenum-graecum) to derive its proteomic insights Geetika Jethra, Priya Gupta, Jyoti Mihra, Alka Pawar and Sharda Choudhary

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Predicting 3D Protein Structure using Homology Modeling PowerPoint PPT Presentation

Predicting 3D Protein Structure using Homology Modeling - Title: Slide 1 Author: jenny Last modified by: jenny Created Date: 8/16/2006 12:43:09 PM Document presentation format: On-screen Show Other titles

Title: Slide 1 Author: jenny Last modified by: jenny Created Date: 8/16/2006 12:43:09 PM Document presentation format: On-screen Show Other titles

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Introduction to Proteomics tools in Homology Modelingweb PowerPoint PPT Presentation

Introduction to Proteomics tools in Homology Modelingweb - Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...

Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...

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Bioinformatics Resources and Tools on the Web: A Primer PowerPoint PPT Presentation

Bioinformatics Resources and Tools on the Web: A Primer - Much of this material comes from the Boston University course: BF527 ... Nematode: http://www.wormbase.org/ Nucleic Acids Research Database Issue ...

Much of this material comes from the Boston University course: BF527 ... Nematode: http://www.wormbase.org/ Nucleic Acids Research Database Issue ...

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WP6%20Part%201:%20Bioinformatics PowerPoint PPT Presentation

WP6%20Part%201:%20Bioinformatics - WP6 Part 1: Bioinformatics Presenters: Xueping Quan, Marco Schorlemmer, Dave Robertson First results passed peer review Working on more extensive proteomics knowledge ...

WP6 Part 1: Bioinformatics Presenters: Xueping Quan, Marco Schorlemmer, Dave Robertson First results passed peer review Working on more extensive proteomics knowledge ...

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Protein Structure PowerPoint PPT Presentation

Protein Structure - Test an array of conditions to determine which give good quality crystals. ... Compute atom locations (C, N, O, S) Relax structure computationally ... Rosetta ...

Test an array of conditions to determine which give good quality crystals. ... Compute atom locations (C, N, O, S) Relax structure computationally ... Rosetta ...

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Homology Modeling (advanced) PowerPoint PPT Presentation

Homology Modeling (advanced) - Deswal R, Singh R, Lynn AM, Frank R. Methods: Simple threading of sequence on human homologue ... AMBER (Peter Kollman, UCSF) CHARMM (Martin Karplus, Harvard) ...

Deswal R, Singh R, Lynn AM, Frank R. Methods: Simple threading of sequence on human homologue ... AMBER (Peter Kollman, UCSF) CHARMM (Martin Karplus, Harvard) ...

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Bio-Trac 25 (Proteomics: Principles and Methods) PowerPoint PPT Presentation

Bio-Trac 25 (Proteomics: Principles and Methods) - Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...

Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...

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Bio-Trac 25 (Proteomics: Principles and Methods) - Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format

Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format

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Bioinformatics how to - Over 30,000 protein structures have been determined, mostly by X-ray crystallography (PDB) ... OR Go to.... http://bioinformatics.burnham.org/~natasha/modeling.html ...

Over 30,000 protein structures have been determined, mostly by X-ray crystallography (PDB) ... OR Go to.... http://bioinformatics.burnham.org/~natasha/modeling.html ...

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Homology Modeling PowerPoint PPT Presentation

Homology Modeling - Homology Modeling Homology Modeling Presentation Fold recognition Model building Loop building Sidechain modeling Refinement Testing methods: the CASP experiment ...

Homology Modeling Homology Modeling Presentation Fold recognition Model building Loop building Sidechain modeling Refinement Testing methods: the CASP experiment ...

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Bioinformatics master course DNA/Protein structure-function analysis and prediction Lecture 5: Protein Fold Families PowerPoint PPT Presentation

Bioinformatics master course DNA/Protein structure-function analysis and prediction Lecture 5: Protein Fold Families - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/3/2003 6:56:45 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/3/2003 6:56:45 PM Document presentation format: On-screen Show

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Plant Genetic Engineering PowerPoint PPT Presentation

Plant Genetic Engineering - Plant Genetic Engineering. Genetically modified crops (GMCs, GM crops, or biotech crops) are plants, the DNA of which has been modified using genetic engineering ...

Plant Genetic Engineering. Genetically modified crops (GMCs, GM crops, or biotech crops) are plants, the DNA of which has been modified using genetic engineering ...

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Bioinformatics of Protein Structure PowerPoint PPT Presentation

Bioinformatics of Protein Structure - CATH and SCOP are two databases that 'organize' protein structures, each ... SCOP database. Classification scheme: Class, Fold, ... HMM's are useful at SCOP ...

CATH and SCOP are two databases that 'organize' protein structures, each ... SCOP database. Classification scheme: Class, Fold, ... HMM's are useful at SCOP ...

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Bioinformatics for Genomic and Proteomic data analysis PowerPoint PPT Presentation

Bioinformatics for Genomic and Proteomic data analysis - Predicting phyico-chemical properties of protein (ProtParam) ... frog A chick A mouse A. mouse B chick B frog B. paralogs. orthologs orthologs. gene duplication ...

Predicting phyico-chemical properties of protein (ProtParam) ... frog A chick A mouse A. mouse B chick B frog B. paralogs. orthologs orthologs. gene duplication ...

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Neural Network Training PowerPoint PPT Presentation

Neural Network Training - You can break up the hydrophobicity scale into ranges, and assign amino acids on ... to represent each residue by a real number (e.g. hydrophobicity index) ...

You can break up the hydrophobicity scale into ranges, and assign amino acids on ... to represent each residue by a real number (e.g. hydrophobicity index) ...

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Protein Tertiary Structure Prediction PowerPoint PPT Presentation

Protein Tertiary Structure Prediction - Structural Bioinformatics Protein Tertiary Structure Prediction Applying Differential Geometry for DNA and RNA function prediction Frequency of points RNA binding ...

Structural Bioinformatics Protein Tertiary Structure Prediction Applying Differential Geometry for DNA and RNA function prediction Frequency of points RNA binding ...

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Structure Visualization PowerPoint PPT Presentation

Structure Visualization - http://biochemistry.utoronto.ca/steipe/bioinformatics. Work through the Rasmol tutorial ! ... structure alignment and analysis of sequence alignments. ...

http://biochemistry.utoronto.ca/steipe/bioinformatics. Work through the Rasmol tutorial ! ... structure alignment and analysis of sequence alignments. ...

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Modern Methods in Drug Discovery - Modern Methods in Drug Discovery Aims of this course: comprehensive knowledge about all processes in the drug discovery pipeline in particular in silico methods of ...

Modern Methods in Drug Discovery Aims of this course: comprehensive knowledge about all processes in the drug discovery pipeline in particular in silico methods of ...

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Bio-Trac 25 (Proteomics: Principles and Methods) - Proteomic Resources 2D-Gel Image Databases Slide 49 PRIDE: centralized, standards compliant, public data repository for proteomics data Slide 51 ...

Proteomic Resources 2D-Gel Image Databases Slide 49 PRIDE: centralized, standards compliant, public data repository for proteomics data Slide 51 ...

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The Genome Access Course Protein Structure PowerPoint PPT Presentation

The Genome Access Course Protein Structure - High quality; nice graphics. Alignment of. Representative. Members. Description ... Pfam, SMART, ProDom, PRINTS, and Prosite domains. High quality annotation ...

High quality; nice graphics. Alignment of. Representative. Members. Description ... Pfam, SMART, ProDom, PRINTS, and Prosite domains. High quality annotation ...

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1999' 5' 21 by S' J' Kim PowerPoint PPT Presentation

1999' 5' 21 by S' J' Kim - 5. 21 by S. J. Kim. 1. PA-catalyzed enzymatic reaction mechanism ... 2 : POM-6-APA (R=CH2OCOC(CH3)3), 6-APA(R=H) 3 : pivampicillin (R=CH2OCOC(CH3)3), ampicillin(R=H) ...

5. 21 by S. J. Kim. 1. PA-catalyzed enzymatic reaction mechanism ... 2 : POM-6-APA (R=CH2OCOC(CH3)3), 6-APA(R=H) 3 : pivampicillin (R=CH2OCOC(CH3)3), ampicillin(R=H) ...

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Protein Structure - Compute atom locations (C, N, O, S) Relax structure ... NMR: NOEs, J-coupling constants measurements give structural constraints ... GAMESS, Rosetta (Baker lab) ...

Compute atom locations (C, N, O, S) Relax structure ... NMR: NOEs, J-coupling constants measurements give structural constraints ... GAMESS, Rosetta (Baker lab) ...

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Protein Structure Prediction - Protein Structure Prediction Sequence database searching Domain assignment Multiple sequence alignment Comparative or homology modeling Secondary structure prediction

Protein Structure Prediction Sequence database searching Domain assignment Multiple sequence alignment Comparative or homology modeling Secondary structure prediction

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BioTrac 25 Proteomics: Principles and Methods - BioTrac 25 Proteomics: Principles and Methods

BioTrac 25 Proteomics: Principles and Methods

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Structural bioinformatics for glycobiology PowerPoint PPT Presentation

Structural bioinformatics for glycobiology - The

The

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Presentazione di PowerPoint PowerPoint PPT Presentation

Presentazione di PowerPoint - Department of Biology, University of Padova, Padova, Italy ... Zebrafish ( 0,49 mV) Negative V(S): Icefish peculiarity. Net formal charge -7 ...

Department of Biology, University of Padova, Padova, Italy ... Zebrafish ( 0,49 mV) Negative V(S): Icefish peculiarity. Net formal charge -7 ...

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BCB 444/544 - Orientation can be predicted using 'positive inside' rule ... periplasmic side (space between inner & outer membrane in gram-negative bacteria) ...

Orientation can be predicted using 'positive inside' rule ... periplasmic side (space between inner & outer membrane in gram-negative bacteria) ...

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Untangling Knots in Lattices and Proteins PowerPoint PPT Presentation

Untangling Knots in Lattices and Proteins - 40. 383. 8. 4. 114. 6. 0. 20. 4 ...and after reduction. Average ... Study statistics of knot closures after generating 1000 pairs of points (S1 and S2) ...

40. 383. 8. 4. 114. 6. 0. 20. 4 ...and after reduction. Average ... Study statistics of knot closures after generating 1000 pairs of points (S1 and S2) ...

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Structural Bioinformatics 2 PowerPoint PPT Presentation

Structural Bioinformatics 2 - rate of evolution of different parts of protein structures ... sometimes 1.0 Angstrom RMSD (RMSD is the root mean square deviation between ...

rate of evolution of different parts of protein structures ... sometimes 1.0 Angstrom RMSD (RMSD is the root mean square deviation between ...

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Lab 9'3: Homology Modeling PowerPoint PPT Presentation

Lab 9'3: Homology Modeling - QRS E. coli vs. ERS P. putida: ~ 19% ID ... vs. sequence alignment between E. coli GlnRS and G. stearothermophilus TyrRS. ... (e.g. in terms of) ...

QRS E. coli vs. ERS P. putida: ~ 19% ID ... vs. sequence alignment between E. coli GlnRS and G. stearothermophilus TyrRS. ... (e.g. in terms of) ...

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Protein Structure Prediction - Defined by its position (x,y,z), its shape (usually a ball) ... Eaton, et al, NIH. PPA: Gruebele, et al, UIUC. BBAW. http://pande.stanford.edu/ Homology Modeling ...

Defined by its position (x,y,z), its shape (usually a ball) ... Eaton, et al, NIH. PPA: Gruebele, et al, UIUC. BBAW. http://pande.stanford.edu/ Homology Modeling ...

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Bioinformatics: Applications PowerPoint PPT Presentation

Bioinformatics: Applications - High-throughput methods of measuring protein expression ... A keystone of Structural Proteomics. Homology Modeling. Identify homologous sequences in PDB ...

High-throughput methods of measuring protein expression ... A keystone of Structural Proteomics. Homology Modeling. Identify homologous sequences in PDB ...

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Computing Patterns in Biology PowerPoint PPT Presentation

Computing Patterns in Biology - Hydrophobicity is a property of groups of amino acids - best examined as a graph ... pepinfo: plots protein secondary structure and hydrophobicity in parallel panels ...

Hydrophobicity is a property of groups of amino acids - best examined as a graph ... pepinfo: plots protein secondary structure and hydrophobicity in parallel panels ...

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Patterns in Biological Sequences PowerPoint PPT Presentation

Patterns in Biological Sequences - Can analyze sequence using a Unix mainframe, or with free tools on the Web ... http://www.doe-mbi.ucla.edu/people/fischer/TEST/getsequence.html ...

Can analyze sequence using a Unix mainframe, or with free tools on the Web ... http://www.doe-mbi.ucla.edu/people/fischer/TEST/getsequence.html ...

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Structural Biology PowerPoint PPT Presentation

Structural Biology - 12/Dec 11:00-12:45 C2. GS NMR in Structural Biology. GS How Proteins Recognize DNA ... since they don't occur in proteins (except for the N and C termini respectively) ...

12/Dec 11:00-12:45 C2. GS NMR in Structural Biology. GS How Proteins Recognize DNA ... since they don't occur in proteins (except for the N and C termini respectively) ...

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Protein Structure Prediction - There is a choice of hydrogen bond partner for each residue. ... Structure class as defined by SCOP or CATH. Folds, as defined by SCOP and CATH ...

There is a choice of hydrogen bond partner for each residue. ... Structure class as defined by SCOP or CATH. Folds, as defined by SCOP and CATH ...

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ENCODE: finished pilot phase (Francesca Camilli, update PowerPoint PPT Presentation

ENCODE: finished pilot phase (Francesca Camilli, update - ENCODE: finished pilot phase (Francesca Camilli, update) Tress, M., Martelli, P.L., Frankish, A., Reeves, G., Wesselink J.J., Yeats, C., Olason, P.I., Albrecht, M ...

ENCODE: finished pilot phase (Francesca Camilli, update) Tress, M., Martelli, P.L., Frankish, A., Reeves, G., Wesselink J.J., Yeats, C., Olason, P.I., Albrecht, M ...

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Folie 1 - D. W. Mount: Bioinformatics, Cold Spring Harbor Laboratory Press, 2001. ... Evaluate using a distance-based 'hydrophobicity' or pseudo-thermodynamic potential ...

D. W. Mount: Bioinformatics, Cold Spring Harbor Laboratory Press, 2001. ... Evaluate using a distance-based 'hydrophobicity' or pseudo-thermodynamic potential ...

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SequenceFunction Relationships PowerPoint PPT Presentation

SequenceFunction Relationships - Rules for base pairing and free energy minimization are known ... Hydrophobicity is a property of groups of amino acids - best examined as a graph ...

Rules for base pairing and free energy minimization are known ... Hydrophobicity is a property of groups of amino acids - best examined as a graph ...

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48x36 Poster Template PowerPoint PPT Presentation

48x36 Poster Template - Mutations to DNA and epigenetic changes accumulate that eventually result in ... IMGT, the international ImMunoGeneTics information system http://imgt.cines.fr ...

Mutations to DNA and epigenetic changes accumulate that eventually result in ... IMGT, the international ImMunoGeneTics information system http://imgt.cines.fr ...

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Swissmodel PowerPoint PPT Presentations