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Transition of Slicer2.x Modules to Slicer3: FreeSurfer Integration of FreeSurfer scalar overlays and colour lookup tables into Slicer3. PowerPoint PPT Presentation
Transition of Slicer2.x Modules to Slicer3: FreeSurfer Integration of FreeSurfer scalar overlays and colour lookup tables into Slicer3. - Integration of FreeSurfer scalar overlays and colour lookup tables into Slicer3. ... Software: Extend MRML color nodes to include FreeSurfer. colours. ...
Integration of FreeSurfer scalar overlays and colour lookup tables into Slicer3. ... Software: Extend MRML color nodes to include FreeSurfer. colours. ...
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Slicer3 and Slicer4 PowerPoint PPT Presentation
Slicer3 and Slicer4 - Slicer3 and Slicer4 Steve Pieper, PhD Chief Architect for 3D Slicer Engineering Core PI for Neuroimage Analysis Center Engineering Site PI and Dissemination Co-PI for ...
Slicer3 and Slicer4 Steve Pieper, PhD Chief Architect for 3D Slicer Engineering Core PI for Neuroimage Analysis Center Engineering Site PI and Dissemination Co-PI for ...
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Slicer3 Launch and Pack: Setting up an efficient and workable deployment solution for Slicer3 PowerPoint PPT Presentation
Slicer3 Launch and Pack: Setting up an efficient and workable deployment solution for Slicer3 - Title: Bone Meshing: Develop meshing algorithms suitable for surface contact analysis. Integrate these algorithms and required user interaction into Slicer.
Title: Bone Meshing: Develop meshing algorithms suitable for surface contact analysis. Integrate these algorithms and required user interaction into Slicer.
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Transition of Slicer2.x Modules to Slicer3: Fiducials PowerPoint PPT Presentation
Transition of Slicer2.x Modules to Slicer3: Fiducials - Various picking strategies were explored for placing fiducials in 3D, ... is reliant on some architecture reorganisation to integrate event handling. Completion ...
Various picking strategies were explored for placing fiducials in 3D, ... is reliant on some architecture reorganisation to integrate event handling. Completion ...
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Slicer3 Launch and Pack: Setting up an efficient and workable deployment solution for Slicer3 PowerPoint PPT Presentation
Slicer3 Launch and Pack: Setting up an efficient and workable deployment solution for Slicer3 - Define details of slicer3's launcher (order from the current chaos) ... Options: static builds, C launcher, Tcl Launcher, BAT/Shell Scripts...
Define details of slicer3's launcher (order from the current chaos) ... Options: static builds, C launcher, Tcl Launcher, BAT/Shell Scripts...
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Thickness Measurement Slicer3 Module: Develop simple Slicer3 Module for thickness measurement of lab PowerPoint PPT Presentation
Thickness Measurement Slicer3 Module: Develop simple Slicer3 Module for thickness measurement of lab - Algorithms: Finish a simple module for thickness measurement based. on boundary conditions given by a labelmap. Improve user interface. ...
Algorithms: Finish a simple module for thickness measurement based. on boundary conditions given by a labelmap. Improve user interface. ...
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Transition of Slicer2.x Modules to Slicer3: ModelMaker Extend ModelMaker to use MRML Color nodes. PowerPoint PPT Presentation
Transition of Slicer2.x Modules to Slicer3: ModelMaker Extend ModelMaker to use MRML Color nodes. - Mathieu Malaterre, Kitware (software) Katie Hayes, BWH (testing) ... vtkTensorUtil, vtkDTMR:I User:Mathieu/Week. Converted Slicer 2.6 TCL ModelMaker to ...
Mathieu Malaterre, Kitware (software) Katie Hayes, BWH (testing) ... vtkTensorUtil, vtkDTMR:I User:Mathieu/Week. Converted Slicer 2.6 TCL ModelMaker to ...
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Slicer3 plugins PowerPoint PPT Presentation
Slicer3 plugins - svn log | grep '^r' | cut -d ' ' -f 3 | sort | uniq | wc ... Generate Connectivity Map. Stochastic ROI Tract Filter. Stochastic Stochastic Tractography Filter ...
svn log | grep '^r' | cut -d ' ' -f 3 | sort | uniq | wc ... Generate Connectivity Map. Stochastic ROI Tract Filter. Stochastic Stochastic Tractography Filter ...
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Integrating with Slicer3 PowerPoint PPT Presentation
Integrating with Slicer3 - Allow users to assemble their own set of tools Customized Bundles by task or application Easy to download ... Editor Teem Two Tensor Tractography VMTK ...
Allow users to assemble their own set of tools Customized Bundles by task or application Easy to download ... Editor Teem Two Tensor Tractography VMTK ...
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Slicer3 Rendering Pipeline PowerPoint PPT Presentation
Slicer3 Rendering Pipeline - Slicer3 Rendering Pipeline. Study documents. Raimundo Sierra ... Factor 25 leads to perceivable slowdown, from 16ms/rendering to 200 ms. px. py. I1 ...
Slicer3 Rendering Pipeline. Study documents. Raimundo Sierra ... Factor 25 leads to perceivable slowdown, from 16ms/rendering to 200 ms. px. py. I1 ...
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Slicer3 plugins: Going Further PowerPoint PPT Presentation
Slicer3 plugins: Going Further - vtkPluginFilterWatcher watchDecimate(decimate, 'Reduce Triangle Count' ... decimate- Update(); VTK #include 'itkPluginFilterWatcher.h ...
vtkPluginFilterWatcher watchDecimate(decimate, 'Reduce Triangle Count' ... decimate- Update(); VTK #include 'itkPluginFilterWatcher.h ...
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Slicer3: Remote I/O PowerPoint PPT Presentation
Slicer3: Remote I/O - Anatomical scan (anatomical context) FIPS statistics ( analysis results) FreeSurfer morphology analysis (for atlas-based info linked to ontology) Status: ...
Anatomical scan (anatomical context) FIPS statistics ( analysis results) FreeSurfer morphology analysis (for atlas-based info linked to ontology) Status: ...
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Slicer3 Editor: PowerPoint PPT Presentation
Slicer3 Editor: - Define needed improvements. Plan/Expected Challenges/Publication. Team ... Found some bugs that seem to depend on what dataset is loaded ...
Define needed improvements. Plan/Expected Challenges/Publication. Team ... Found some bugs that seem to depend on what dataset is loaded ...
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Interfacing processing and visualization tools: FIPS to Slicer3 and the QueryAtlas PowerPoint PPT Presentation
Interfacing processing and visualization tools: FIPS to Slicer3 and the QueryAtlas - Interfacing processing and visualization tools: FIPS to Slicer3 and the QueryAtlas Goals for 3D Slicer fBIRN Query Atlas Rich Data Exploration Environment Functional ...
Interfacing processing and visualization tools: FIPS to Slicer3 and the QueryAtlas Goals for 3D Slicer fBIRN Query Atlas Rich Data Exploration Environment Functional ...
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Slicer3 Status Update PowerPoint PPT Presentation
Slicer3 Status Update - National Alliance for Medical Image Computing. http://na ... collaboration- basic and clinical neurosciences, physics, image processing and computer science ...
National Alliance for Medical Image Computing. http://na ... collaboration- basic and clinical neurosciences, physics, image processing and computer science ...
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Slicer3 plugins PowerPoint PPT Presentation
Slicer3 plugins - an entry in the module menu ... a panel of user interface controls ... Behind the scenes. Tasks queued for processing thread. Three types of modules: executable, ...
an entry in the module menu ... a panel of user interface controls ... Behind the scenes. Tasks queued for processing thread. Three types of modules: executable, ...
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Migrating Slicer2.x Modules to Slicer3: Integrate Slicer 2 modules into Slicer 3. PowerPoint PPT Presentation
Migrating Slicer2.x Modules to Slicer3: Integrate Slicer 2 modules into Slicer 3. - Bill Lorensen, GE (exec model support) (clinical) Algorithms: Software: Port to VTK 5, gold ... Clinical: Plan/Expected Challenges/Publication. Team ...
Bill Lorensen, GE (exec model support) (clinical) Algorithms: Software: Port to VTK 5, gold ... Clinical: Plan/Expected Challenges/Publication. Team ...
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Slicer3 Architecture PowerPoint PPT Presentation
Slicer3 Architecture - Code in Base implements 'first order' Node types (Volumes, Models, Transforms, ... Slice Composite Node. Background. Slice Layer Logic. Slice Logic. Volume ...
Code in Base implements 'first order' Node types (Volumes, Models, Transforms, ... Slice Composite Node. Background. Slice Layer Logic. Slice Logic. Volume ...
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Large Scale Job Submission: Integration with Slicer3 Execution Model: PowerPoint PPT Presentation
Large Scale Job Submission: Integration with Slicer3 Execution Model: - NAMIC Community (application use cases) ... Clinical: Collect two distinct use cases which provide meaningful. data for the NAMIC community. ...
NAMIC Community (application use cases) ... Clinical: Collect two distinct use cases which provide meaningful. data for the NAMIC community. ...
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Grid Interface for Slicer3: Make Slicer 3 work on a set of clusters. PowerPoint PPT Presentation
Grid Interface for Slicer3: Make Slicer 3 work on a set of clusters. - ... Slicer 3 work on a set of clusters. (algorithms) Neil Jones, ... Identify minimum protocol set (e.g., GSI, ssh keys, condor, sge) Agree on delivery schedule ...
... Slicer 3 work on a set of clusters. (algorithms) Neil Jones, ... Identify minimum protocol set (e.g., GSI, ssh keys, condor, sge) Agree on delivery schedule ...
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System Set-up for the Integration of PowerPoint PPT Presentation
System Set-up for the Integration of - System Set-up for the Integration of BrainLab, BioImage Suite and Slicer3 Haiying Liu Surgical Planning Lab Brigham & Women's Hospital Harvard Medical School
System Set-up for the Integration of BrainLab, BioImage Suite and Slicer3 Haiying Liu Surgical Planning Lab Brigham & Women's Hospital Harvard Medical School
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National Alliance for Medical Image Computing PowerPoint PPT Presentation
National Alliance for Medical Image Computing - ... are a 'GWE Client' distribution and 'GWE CLM Proxys' (CLMP) ... GWE CLM Proxys (CLMP): Slicer3 CLMs which will proxy into another (proxied CLM) ...
... are a 'GWE Client' distribution and 'GWE CLM Proxys' (CLMP) ... GWE CLM Proxys (CLMP): Slicer3 CLMs which will proxy into another (proxied CLM) ...
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A longitudinal study of brain development in autism PowerPoint PPT Presentation
A longitudinal study of brain development in autism - Surfaced based morphetry shows decreased CT in school- age ASD (Chen ... A Slicer3 high-level module for individual cortical thickness analysis has been ...
Surfaced based morphetry shows decreased CT in school- age ASD (Chen ... A Slicer3 high-level module for individual cortical thickness analysis has been ...
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Slicer 3 Update for Core 1 PowerPoint PPT Presentation
Slicer 3 Update for Core 1 - GUI separated from MRML and Logic to support possible alternate GUIs. Slicer3 Module Programming ... Auto-Generated GUIs from XML Descriptions. Notes: ...
GUI separated from MRML and Logic to support possible alternate GUIs. Slicer3 Module Programming ... Auto-Generated GUIs from XML Descriptions. Notes: ...
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UCSD / BIRN Coordinating Center NAMIC Group PowerPoint PPT Presentation
UCSD / BIRN Coordinating Center NAMIC Group - Grid Application Development. Integration of Slicer3 Execution model with Grid ... Provide interface module (Grid Wizard Interface) for the NA-MIC kit to enable ...
Grid Application Development. Integration of Slicer3 Execution model with Grid ... Provide interface module (Grid Wizard Interface) for the NA-MIC kit to enable ...
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Converting ITK Pipeline for Archips, HPC Based, Deformable Registration to Slicer3 Module PowerPoint PPT Presentation
Converting ITK Pipeline for Archips, HPC Based, Deformable Registration to Slicer3 Module - Daniel Goldberg-Zimring, BWH. Jim Miller, GE. Bill Lorensen, GE. Algorithms: Implementation/development of ITK based rigid and non-rigid ...
Daniel Goldberg-Zimring, BWH. Jim Miller, GE. Bill Lorensen, GE. Algorithms: Implementation/development of ITK based rigid and non-rigid ...
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Slicer for Neurosurgical Planning PowerPoint PPT Presentation
Slicer for Neurosurgical Planning - 6th Annual World Congress for Brain Mapping and Image Guided ... Endoscopy (broncho-, neuro-, feto-scopy) Slide courtesy N. Hata. Slicer3 Features for Planning ...
6th Annual World Congress for Brain Mapping and Image Guided ... Endoscopy (broncho-, neuro-, feto-scopy) Slide courtesy N. Hata. Slicer3 Features for Planning ...
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Tractography in Slicer3: Develop Slicer software module for tractography. PowerPoint PPT Presentation
Tractography in Slicer3: Develop Slicer software module for tractography. - Develop Slicer software module for ... Alex Golby, Marek Kubicki, BWH (clinical) ... Clinical: Tractography module will in future support surgical planning, ...
Develop Slicer software module for ... Alex Golby, Marek Kubicki, BWH (clinical) ... Clinical: Tractography module will in future support surgical planning, ...
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Slicer 3'4 Update PowerPoint PPT Presentation
Slicer 3'4 Update - Provide Reference Implementation using NA-MIC Kit (End-to-End Open Source) ... cat image.nrrd | slicerput.tcl name. YourTool (exernal process such as MATLAB) ...
Provide Reference Implementation using NA-MIC Kit (End-to-End Open Source) ... cat image.nrrd | slicerput.tcl name. YourTool (exernal process such as MATLAB) ...
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A longitudinal study of brain development in autism PowerPoint PPT Presentation
A longitudinal study of brain development in autism - A longitudinal study of brain development in autism. Heather ... available to the community through MIDAS ... insight-journal.org/midas/item/view/2277. NA ...
A longitudinal study of brain development in autism. Heather ... available to the community through MIDAS ... insight-journal.org/midas/item/view/2277. NA ...
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Slicer 3.0 Architecure PowerPoint PPT Presentation
Slicer 3.0 Architecure - Slicer Mods. Batch. Programs. Non-NAMIC. Cmd tools. LONI. Pipeline. Birn Grid. Data/Compute ... All classes in the Logic directory should be able to run ...
Slicer Mods. Batch. Programs. Non-NAMIC. Cmd tools. LONI. Pipeline. Birn Grid. Data/Compute ... All classes in the Logic directory should be able to run ...
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Slicer Update PowerPoint PPT Presentation
Slicer Update - Andy Freudling (BWH) with Lisa Avila and Sebastien Barre (Kitware) See Andy ... Project is Underway (Terry Lorber, Alex Yarmarkovich) with Support from NITRC ...
Andy Freudling (BWH) with Lisa Avila and Sebastien Barre (Kitware) See Andy ... Project is Underway (Terry Lorber, Alex Yarmarkovich) with Support from NITRC ...
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Dinggang Shen PowerPoint PPT Presentation
Dinggang Shen - Development and Dissemination of Robust Brain MRI Measurement Tools (1R01EB006733) IDEA Dinggang Shen Department of Radiology and BRIC UNC-Chapel Hill
Development and Dissemination of Robust Brain MRI Measurement Tools (1R01EB006733) IDEA Dinggang Shen Department of Radiology and BRIC UNC-Chapel Hill
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3D Slicer Interactive Modules PowerPoint PPT Presentation
3D Slicer Interactive Modules - Any Executable (even MATLAB Wrapped with Shell Script) Can Run in Separate Thread ... Can Used in Shell Scripts or Distributed Applications ...
Any Executable (even MATLAB Wrapped with Shell Script) Can Run in Separate Thread ... Can Used in Shell Scripts or Distributed Applications ...
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3D Slicer Architecture and Implementation PowerPoint PPT Presentation
3D Slicer Architecture and Implementation - ... and Methodologies for Medical Image Computing. Facilitate Research ... Teem: Multidimensional Raster Image Library (Gordon Kindlmann) Includes NRRD File Format ...
... and Methodologies for Medical Image Computing. Facilitate Research ... Teem: Multidimensional Raster Image Library (Gordon Kindlmann) Includes NRRD File Format ...
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3D Slicer Version 3'0 and Diffusion MRI PowerPoint PPT Presentation
3D Slicer Version 3'0 and Diffusion MRI - F. Jolesz, R. Kikinis, S. Wells, CF. Westin, M. Halle, T. Kapur, W.Schroeder, J. ... Haker SJ, Mulkern RV, Roebuck JR, Barnes AS, Dimaio S, Hata N, Tempany CM. ...
F. Jolesz, R. Kikinis, S. Wells, CF. Westin, M. Halle, T. Kapur, W.Schroeder, J. ... Haker SJ, Mulkern RV, Roebuck JR, Barnes AS, Dimaio S, Hata N, Tempany CM. ...
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Viewing essentials PowerPoint PPT Presentation
Viewing essentials - An NCRR National Resource Center. http://nac.spl.harvard.edu. Viewing essentials. GE Research ... Surgical Planning Laboratory, Brigham and Women's Hospital ...
An NCRR National Resource Center. http://nac.spl.harvard.edu. Viewing essentials. GE Research ... Surgical Planning Laboratory, Brigham and Women's Hospital ...
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Slicer 3.0 Architecure PowerPoint PPT Presentation
Slicer 3.0 Architecure - Simplify and unify command line processing. Auto generate ... Discovers executables at Slicer start-up. Generates GUI from XML. Executes command line program ...
Simplify and unify command line processing. Auto generate ... Discovers executables at Slicer start-up. Generates GUI from XML. Executes command line program ...
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Aerial Image Exploitation PowerPoint PPT Presentation
Aerial Image Exploitation - Computer Aided Forensics. Image-Guided Manufacturing. Optical Gauging. Optical Inspection ... Medical Image Computing and Computer Assisted Intervention 2006 (MICCAI) ...
Computer Aided Forensics. Image-Guided Manufacturing. Optical Gauging. Optical Inspection ... Medical Image Computing and Computer Assisted Intervention 2006 (MICCAI) ...
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3D Slicer PowerPoint PPT Presentation
3D Slicer - 3D Slicer
3D Slicer
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Measuring Alcohol and Stress Interactions with Structural and Perfusion MRI PowerPoint PPT Presentation
Measuring Alcohol and Stress Interactions with Structural and Perfusion MRI - Vervet model ... That project switched from a rhesus to a vervet animal model. ... Acquisition of baseline vervet images for atlas development. Vervet atlas completed ...
Vervet model ... That project switched from a rhesus to a vervet animal model. ... Acquisition of baseline vervet images for atlas development. Vervet atlas completed ...
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3D Slicer Architecture and Implementation PowerPoint PPT Presentation
3D Slicer Architecture and Implementation - 3D Slicer Architecture and Implementation Steve Pieper, PhD * Motivation for this architecture: modularize! Make the parts resuable. MVC is model/view/controller ...
3D Slicer Architecture and Implementation Steve Pieper, PhD * Motivation for this architecture: modularize! Make the parts resuable. MVC is model/view/controller ...
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3D Slicer PowerPoint PPT Presentation
3D Slicer - 3D Slicer
3D Slicer
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Delphine Ribes PowerPoint PPT Presentation
Delphine Ribes - Measure Cortical Thickness by using the Danielsson Distance Transform. White ... Given imperfect, somewhat ... Validation: Duke QC study (Cecil Charles) ...
Measure Cortical Thickness by using the Danielsson Distance Transform. White ... Given imperfect, somewhat ... Validation: Duke QC study (Cecil Charles) ...
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Warum Brauchen Wir Medical Image Computing? PowerPoint PPT Presentation
Warum Brauchen Wir Medical Image Computing? - Warum Brauchen Wir Medical Image Computing
Warum Brauchen Wir Medical Image Computing
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Velocardiofacial Syndrome as a Genetic Model for Schizophrenia PowerPoint PPT Presentation
Velocardiofacial Syndrome as a Genetic Model for Schizophrenia - (cingulum, uncinate, arcuate, fornix). Data presented. at Santa Fe in October. ... 4. Tracts for the Arcuate Fasciculus. extracted, IOFF affected by distortions ...
(cingulum, uncinate, arcuate, fornix). Data presented. at Santa Fe in October. ... 4. Tracts for the Arcuate Fasciculus. extracted, IOFF affected by distortions ...
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An Integrated System for ImageGuided Radiofrequency Ablation RFA of Liver Tumors PowerPoint PPT Presentation
An Integrated System for ImageGuided Radiofrequency Ablation RFA of Liver Tumors - ... and Accountability Act (HIPAA) rules for anonymization of ... Currently implemented using commercial software Xpress-MP (Fair Issac dash optimization) ...
... and Accountability Act (HIPAA) rules for anonymization of ... Currently implemented using commercial software Xpress-MP (Fair Issac dash optimization) ...
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3D Slicer and the NAMIC Kit for IGT Research PowerPoint PPT Presentation
3D Slicer and the NAMIC Kit for IGT Research - ... research institutions on projects including NIH grants and software development. ... NIH Investment. Best of Breed Open Source Tools. Collaborator Expertise ...
... research institutions on projects including NIH grants and software development. ... NIH Investment. Best of Breed Open Source Tools. Collaborator Expertise ...
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Velocardiofacial Syndrome as a Genetic Model for Schizophrenia PowerPoint PPT Presentation
Velocardiofacial Syndrome as a Genetic Model for Schizophrenia - We have been testing and improving slicer 2 DLPFC segmentation module, and ... We are in the process of co-registering fMRI and DTI data in order to use fMRI ...
We have been testing and improving slicer 2 DLPFC segmentation module, and ... We are in the process of co-registering fMRI and DTI data in order to use fMRI ...
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XNAT eXtenible aNatomy Archiving Toolkit PowerPoint PPT Presentation
XNAT eXtenible aNatomy Archiving Toolkit - Further development and application under Randy Buckner at Harvard ... blue 5-10% decrease. BIRN-ADNI Collaboration. mBIRN Integration. BIRN. acquisition. protocols ...
Further development and application under Randy Buckner at Harvard ... blue 5-10% decrease. BIRN-ADNI Collaboration. mBIRN Integration. BIRN. acquisition. protocols ...
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3D Slicer PowerPoint PPT Presentation
3D Slicer - F. Jolesz, R. Kikinis, C. Tempany, P. Black, S. Wells, CF. ... Haker SJ, Mulkern RV, Roebuck JR, Barnes AS, Dimaio S, Hata N, Tempany CM. ...
F. Jolesz, R. Kikinis, C. Tempany, P. Black, S. Wells, CF. ... Haker SJ, Mulkern RV, Roebuck JR, Barnes AS, Dimaio S, Hata N, Tempany CM. ...
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XCEDE Use Cases: PowerPoint PPT Presentation
XCEDE Use Cases: - CVRG (statistics & multi-scale information integration) ... Prostate Brachytherapy Data Also Available for Upload. Use case: CVRG ...
CVRG (statistics & multi-scale information integration) ... Prostate Brachytherapy Data Also Available for Upload. Use case: CVRG ...
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Nicole Aucoin' Kevin Teich, Dan Marcus, Ph' D' , Steve Pieper, Ph'D' PowerPoint PPT Presentation
Nicole Aucoin' Kevin Teich, Dan Marcus, Ph' D' , Steve Pieper, Ph'D' - ... work is part of the Neuroimage Analysis Center (NAC), an NCRR Resource Center, ... Computing can be obtained from http://nihroadmap.nih.gov/bioinformatics. ...
... work is part of the Neuroimage Analysis Center (NAC), an NCRR Resource Center, ... Computing can be obtained from http://nihroadmap.nih.gov/bioinformatics. ...
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Slicer MRML PowerPoint PPT Presentation
Slicer MRML - MRML Library provides API for managing medical image data types (Volumes, Models, ... is used in GUI and Logic to observe Modify, NewScene, NodeAdded, etc. events. ...
MRML Library provides API for managing medical image data types (Volumes, Models, ... is used in GUI and Logic to observe Modify, NewScene, NodeAdded, etc. events. ...
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NAMIC Engineering Activities PowerPoint PPT Presentation
NAMIC Engineering Activities - Ramsey Al-Hakim, GT (algorithms) (contact) John Melonakos (algorithms) ... Dave Tuch, MGH (algorithms) (contact) Josh Snyder, MGH (algorithms) ...
Ramsey Al-Hakim, GT (algorithms) (contact) John Melonakos (algorithms) ... Dave Tuch, MGH (algorithms) (contact) Josh Snyder, MGH (algorithms) ...
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