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Lalign - LALIGN - finds multiple matching subsegments in two sequences ... Use DotLet to plot the Bacillus subtilis UTP-glucose-1-phosphate ...

LALIGN - finds multiple matching subsegments in two sequences ... Use DotLet to plot the Bacillus subtilis UTP-glucose-1-phosphate ...

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Pairwise sequence alignment (practice) PowerPoint PPT Presentation

Pairwise sequence alignment (practice) - Pairwise sequence alignment (practice) * * Manual Work: Write down the amino acid sequences derived from all six possible reading frames of: seq1 ACTGTCGC Open the ...

Pairwise sequence alignment (practice) * * Manual Work: Write down the amino acid sequences derived from all six possible reading frames of: seq1 ACTGTCGC Open the ...

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Definitions - Definitions Optimal alignment - one that exhibits the most correspondences. It is the alignment with the highest score. May or may not be biologically meaningful.

Definitions Optimal alignment - one that exhibits the most correspondences. It is the alignment with the highest score. May or may not be biologically meaningful.

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Bioinformatics PowerPoint PPT Presentation

Bioinformatics - Bioinformatics CSC 391/691; PHY 392; BICM 715 Importance of bioinformatics A more global perspective in experimental design The ability to capitalize on the emerging ...

Bioinformatics CSC 391/691; PHY 392; BICM 715 Importance of bioinformatics A more global perspective in experimental design The ability to capitalize on the emerging ...

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Yeast Comparative Genomic Hybridization (CGH): A method for microarray detection of aneuploidy in S. cerevisiae PowerPoint PPT Presentation

Yeast Comparative Genomic Hybridization (CGH): A method for microarray detection of aneuploidy in S. cerevisiae - False Positives Self vs. Self Arrays visually show consistent green and red spots. False Positives Compile numerical data - 51 spots were consistently green or red ...

False Positives Self vs. Self Arrays visually show consistent green and red spots. False Positives Compile numerical data - 51 spots were consistently green or red ...

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Yeast Comparative Genomic Hybridization (CGH): A method for microarray detection of aneuploidy in S. cerevisiae - Yeast Comparative Genomic Hybridization (CGH): A method for microarray detection of aneuploidy in S. cerevisiae Jackie Ryan Honors Thesis Defense

Yeast Comparative Genomic Hybridization (CGH): A method for microarray detection of aneuploidy in S. cerevisiae Jackie Ryan Honors Thesis Defense

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Presented by Qiong Cheng in cs6640 PowerPoint PPT Presentation

Presented by Qiong Cheng in cs6640 - Obesity - an excess of body fat - a known risk factor for chronic diseases ... Variant is Associated with Adult and Childhood Obesity Science, Vol312 (2006) ...

Obesity - an excess of body fat - a known risk factor for chronic diseases ... Variant is Associated with Adult and Childhood Obesity Science, Vol312 (2006) ...

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MEMS Test Working Group PowerPoint PPT Presentation

MEMS Test Working Group - MEMS 5-in-1 RM Slide Set #4 Reference Materials 8096 and 8097 The MEMS 5-in-1 Test Chips Residual Strain Measurements Physical Measurement Laboratory

MEMS 5-in-1 RM Slide Set #4 Reference Materials 8096 and 8097 The MEMS 5-in-1 Test Chips Residual Strain Measurements Physical Measurement Laboratory

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Searching%20for%20functional%20regions%20(coding%20or%20non-coding)%20in%20mammalian%20genomes PowerPoint PPT Presentation

Searching%20for%20functional%20regions%20(coding%20or%20non-coding)%20in%20mammalian%20genomes - Human mouse bovine : 240 Myrs. Pr diction de fonction ... DEFINITION Bovine brain-specific 14-3-3 protein eta chain mRNA, complete cds. ACCESSION J03868 ...

Human mouse bovine : 240 Myrs. Pr diction de fonction ... DEFINITION Bovine brain-specific 14-3-3 protein eta chain mRNA, complete cds. ACCESSION J03868 ...

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Introduction%20to%20bioinformatics PowerPoint PPT Presentation

Introduction%20to%20bioinformatics - Title: Introduction to bioinformatics Author: pirovano Last modified by: gebruiker Created Date: 3/14/2006 9:06:45 AM Document presentation format

Title: Introduction to bioinformatics Author: pirovano Last modified by: gebruiker Created Date: 3/14/2006 9:06:45 AM Document presentation format

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Multiple sequence alignment PowerPoint PPT Presentation

Multiple sequence alignment - ... (Heringa 1999) T-Coffee (Notredame Higgins Heringa 2000) HMMER (Eddy 1998) [Hidden Markov Model] SAGA (Notredame Higgins1996) [Genetic algorithm] ...

... (Heringa 1999) T-Coffee (Notredame Higgins Heringa 2000) HMMER (Eddy 1998) [Hidden Markov Model] SAGA (Notredame Higgins1996) [Genetic algorithm] ...

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Sequence Alignment Algorithms PowerPoint PPT Presentation

Sequence Alignment Algorithms - Title: Introduction to C++ Software evolution Author: Physics Last modified by: partha Created Date: 8/31/2000 7:11:56 AM Document presentation format

Title: Introduction to C++ Software evolution Author: Physics Last modified by: partha Created Date: 8/31/2000 7:11:56 AM Document presentation format

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Introduction%20to%20bioinformatics%20lecture%209 PowerPoint PPT Presentation

Introduction%20to%20bioinformatics%20lecture%209 - PRALINE pre-profile generation ... In PRALINE, this threshold is given as prepro=1500 (alignment score threshold ... (PRALINE prepro=0) ...

PRALINE pre-profile generation ... In PRALINE, this threshold is given as prepro=1500 (alignment score threshold ... (PRALINE prepro=0) ...

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Dynamic Programming for Sequence alignment PowerPoint PPT Presentation

Dynamic Programming for Sequence alignment - Title: PowerPoint Presentation Author: Neha Last modified by: lenovo Created Date: 1/1/1601 12:00:00 AM Document presentation format: On-screen Show (4:3)

Title: PowerPoint Presentation Author: Neha Last modified by: lenovo Created Date: 1/1/1601 12:00:00 AM Document presentation format: On-screen Show (4:3)

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Homology Modeling PowerPoint PPT Presentation

Homology Modeling - pre-processing, singles, pairs. Desmet, Mayo. reduction in ... de-couple interaction graph into bi-connected components representing local dependencies ...

pre-processing, singles, pairs. Desmet, Mayo. reduction in ... de-couple interaction graph into bi-connected components representing local dependencies ...

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Multiple Alignment PowerPoint PPT Presentation

Multiple Alignment - Multiple Alignment Stuart M. Brown NYU School of Medicine Pairwise Alignment The alignment of two sequences (DNA or protein) is a relatively straightforward ...

Multiple Alignment Stuart M. Brown NYU School of Medicine Pairwise Alignment The alignment of two sequences (DNA or protein) is a relatively straightforward ...

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MICa 8006 Protein Sequence Analysis PowerPoint PPT Presentation

MICa 8006 Protein Sequence Analysis - Smith-Waterman: 'optimal', slow. Blast, Fasta: not guaranteed optimal; faster. wxyzabcdef j ... Smith - Waterman: local. Both are slow, but 'optimal' ...

Smith-Waterman: 'optimal', slow. Blast, Fasta: not guaranteed optimal; faster. wxyzabcdef j ... Smith - Waterman: local. Both are slow, but 'optimal' ...

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Multiple%20sequence%20alignment PowerPoint PPT Presentation

Multiple%20sequence%20alignment - Praline with pre-processing ... PRALINE. Using secondary structure for alignment. Dynamic programming. search matrix ... PRALINE: Using predicted secondary structure ...

Praline with pre-processing ... PRALINE. Using secondary structure for alignment. Dynamic programming. search matrix ... PRALINE: Using predicted secondary structure ...

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Alignment of biological sequences PhD Program on Computational Biology 2005 Laurent Duret Laboratoire de Biom PowerPoint PPT Presentation

Alignment of biological sequences PhD Program on Computational Biology 2005 Laurent Duret Laboratoire de Biom - Laboratoire de Biom trie et Biologie Evolutive (CNRS, INRIA) ... Comparative analysis of human and carp b-actin genes. Carp. Human. 5'UTR. 3 'UTR polyA site ...

Laboratoire de Biom trie et Biologie Evolutive (CNRS, INRIA) ... Comparative analysis of human and carp b-actin genes. Carp. Human. 5'UTR. 3 'UTR polyA site ...

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Multiple Alignment - The alignment of two sequences (DNA or protein) is a relatively straightforward ... The best solution seems to be an approach called Dynamic Programming. ...

The alignment of two sequences (DNA or protein) is a relatively straightforward ... The best solution seems to be an approach called Dynamic Programming. ...

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Pairwise Sequence Alignment PowerPoint PPT Presentation

Pairwise Sequence Alignment - 'CSE4052' 'INTRODUCTION TO BIOINFORMATICS' 'BAH ESEHIR UNIVERSITY' 'SPRING 2005' 'Dr. N AYDIN' ... Introduction to Bioinformatics. 2 ' ...

'CSE4052' 'INTRODUCTION TO BIOINFORMATICS' 'BAH ESEHIR UNIVERSITY' 'SPRING 2005' 'Dr. N AYDIN' ... Introduction to Bioinformatics. 2 ' ...

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Sequence Alignment PowerPoint PPT Presentation

Sequence Alignment - Output: An 'alignment' (mapping one sequence onto the other, possibly with gaps) ... is the Genome Multimedia Site: ocelot.bio.brandeis.edu / pages/classes ...

Output: An 'alignment' (mapping one sequence onto the other, possibly with gaps) ... is the Genome Multimedia Site: ocelot.bio.brandeis.edu / pages/classes ...

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Introduction to bioinformatics PowerPoint PPT Presentation

Introduction to bioinformatics - Title: Introduction to bioinformatics Author: pirovano Last modified by: heringa Created Date: 3/14/2006 9:06:45 AM Document presentation format: On-screen Show

Title: Introduction to bioinformatics Author: pirovano Last modified by: heringa Created Date: 3/14/2006 9:06:45 AM Document presentation format: On-screen Show

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Principles of Sequence Alignments PowerPoint PPT Presentation

Principles of Sequence Alignments - This section provides the larger context within. which sequence ... Natural variation and selection lead to. evolutional adaptation. (mutations not yet known) ...

This section provides the larger context within. which sequence ... Natural variation and selection lead to. evolutional adaptation. (mutations not yet known) ...

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Medical Natural Sciences Year 2: Introduction to Bioinformatics PowerPoint PPT Presentation

Medical Natural Sciences Year 2: Introduction to Bioinformatics - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/3/2003 6:56:45 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/3/2003 6:56:45 PM Document presentation format: On-screen Show

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Bioinformatics 101 BimCore www.bimcore.emory.edu PowerPoint PPT Presentation

Bioinformatics 101 BimCore www.bimcore.emory.edu - Default Scoring Matrix (Smith Waterman) for DNA. A B C D G H K M N R S T U V W X Y ... Smith Waterman Algorithm. Guaranteed to find all significant matches to ...

Default Scoring Matrix (Smith Waterman) for DNA. A B C D G H K M N R S T U V W X Y ... Smith Waterman Algorithm. Guaranteed to find all significant matches to ...

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Multiple Sequence Alignment A survey of the various programs available and application of MSA in add PowerPoint PPT Presentation

Multiple Sequence Alignment A survey of the various programs available and application of MSA in add - Optimal Algorithms (MSA, MWT, MUSEQAL) ... Iterate over a existing sub-optimal solution, modifying it at each step, until a ...

Optimal Algorithms (MSA, MWT, MUSEQAL) ... Iterate over a existing sub-optimal solution, modifying it at each step, until a ...

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Multiple sequence alignment - 4. Toggle Slow/Fast pairwise alignments = SLOW. 5. Pairwise alignment parameters ... 8. Toggle screen display = ON. 9. Output format options. S. Execute a ...

4. Toggle Slow/Fast pairwise alignments = SLOW. 5. Pairwise alignment parameters ... 8. Toggle screen display = ON. 9. Output format options. S. Execute a ...

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Bioinformatics Data Representation and Integration PowerPoint PPT Presentation

Bioinformatics Data Representation and Integration - aspartic acid - asp D. cysteine - cys C. glutamine - gln Q. glutamic acid - glu - E ... UniRef (UniProt NREF (Non-redundant REFerence) database at EBI, UK) ...

aspartic acid - asp D. cysteine - cys C. glutamine - gln Q. glutamic acid - glu - E ... UniRef (UniProt NREF (Non-redundant REFerence) database at EBI, UK) ...

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Algorithms for Sequence Alignments PowerPoint PPT Presentation

Algorithms for Sequence Alignments - Dynamic Programming: Smith-Waterman, Needleman-Wunsch. Methods for Multiple Sequence Alignment ... local alignment: Smith-Waterman. statistical significance can ...

Dynamic Programming: Smith-Waterman, Needleman-Wunsch. Methods for Multiple Sequence Alignment ... local alignment: Smith-Waterman. statistical significance can ...

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Multiple Sequence Alignment - This alignment provides insights not possible in pairwise ... PRALINE. http://zeus.cs.vu.nl/programs/pralinewww/ Builds profiles of sequences to be aligned ...

This alignment provides insights not possible in pairwise ... PRALINE. http://zeus.cs.vu.nl/programs/pralinewww/ Builds profiles of sequences to be aligned ...

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Cours pour Candidats Arbitres PowerPoint PPT Presentation

Cours pour Candidats Arbitres - Bienvenue parmi la grande famille des arbitres Namurois. Votre pr sence prouve que vous ... Adversaires 9m15 du ballon. Coup de sifflet obligatoire. Donn dans ...

Bienvenue parmi la grande famille des arbitres Namurois. Votre pr sence prouve que vous ... Adversaires 9m15 du ballon. Coup de sifflet obligatoire. Donn dans ...

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LSM2104 Part II Lectures 3 and 4 PowerPoint PPT Presentation

LSM2104 Part II Lectures 3 and 4 - Derivation of PAM and BLOSUM and Scoring Matrices. Basic Introduction to Dynamic Programming Techniques ... MSA ( Gupta, Kececioglu & Schaffer, 1995) MACAW ( Schu ...

Derivation of PAM and BLOSUM and Scoring Matrices. Basic Introduction to Dynamic Programming Techniques ... MSA ( Gupta, Kececioglu & Schaffer, 1995) MACAW ( Schu ...

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Heuristiques pour lalignement et la recherche dans les bases de donnes PowerPoint PPT Presentation

Heuristiques pour lalignement et la recherche dans les bases de donnes - Alignement local avec chaque s quence d'ADN (GenBank) ou de prot ines (Swiss-Prot) ... Score d'un alignement multipli par une valeur entre 0 et 1 en fonction de la ...

Alignement local avec chaque s quence d'ADN (GenBank) ou de prot ines (Swiss-Prot) ... Score d'un alignement multipli par une valeur entre 0 et 1 en fonction de la ...

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Exercise 1 - ... through fragment of genomic DNA and lookout for new/already annotated genes. ... Give the program your email address, and begin the HMMgene exercise while you ...

... through fragment of genomic DNA and lookout for new/already annotated genes. ... Give the program your email address, and begin the HMMgene exercise while you ...

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