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JigCell PowerPoint PPT Presentation
JigCell - Virginia Tech, Blacksburg, VA 24061 Figure: Budding yeast model in PET * * Title: PowerPoint Presentation Last modified by: ranj man Document presentation format:
Virginia Tech, Blacksburg, VA 24061 Figure: Budding yeast model in PET * * Title: PowerPoint Presentation Last modified by: ranj man Document presentation format:
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JigCell PowerPoint PPT Presentation
JigCell - http://jigcell.biol.vt.edu/ * Department of Computer Science, ... also provides the ability to define events that occur when a user-defined condition is met. ...
http://jigcell.biol.vt.edu/ * Department of Computer Science, ... also provides the ability to define events that occur when a user-defined condition is met. ...
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Modeling the Cell Cycle with JigCell and DARPA PowerPoint PPT Presentation
Modeling the Cell Cycle with JigCell and DARPA - ... http://jigcell.biol.vt.edu JigCell Model Builder Mutations Wild type cell Mutations Typically caused by gene knockout Consider a mutant with no B to degrade ...
... http://jigcell.biol.vt.edu JigCell Model Builder Mutations Wild type cell Mutations Typically caused by gene knockout Consider a mutant with no B to degrade ...
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Using JigCell and other BioSPICE Tools to Understand the Regulation of Cell Growth and Division PowerPoint PPT Presentation
Using JigCell and other BioSPICE Tools to Understand the Regulation of Cell Growth and Division - Bela Novak (Tech Univ Budapest) 3. Outline. The biological problem ... Ranjit Randhawa Bob Ball. 20. Project Manager. JigCell. tools. 21. Model Builder. 22 ...
Bela Novak (Tech Univ Budapest) 3. Outline. The biological problem ... Ranjit Randhawa Bob Ball. 20. Project Manager. JigCell. tools. 21. Model Builder. 22 ...
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Contributions to Release 3 PowerPoint PPT Presentation
Contributions to Release 3 - Contributions to Release 3 Software Components: JigCell Model Builder JigCell Run Manager JigCell Comparator Infrastruture: SBML Level 2 parser Simulator API demo
Contributions to Release 3 Software Components: JigCell Model Builder JigCell Run Manager JigCell Comparator Infrastruture: SBML Level 2 parser Simulator API demo
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Modeling%20the%20Cell%20Cycle%20with%20JigCell%20and%20DARPA PowerPoint PPT Presentation
Modeling%20the%20Cell%20Cycle%20with%20JigCell%20and%20DARPA - Tyson's model contains over 30 ODEs, some nonlinear. ... Many (not all) active systems biology modelers and software developers represented ...
Tyson's model contains over 30 ODEs, some nonlinear. ... Many (not all) active systems biology modelers and software developers represented ...
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Pathway Modeling and Problem Solving Environments PowerPoint PPT Presentation
Pathway Modeling and Problem Solving Environments - Pathway Modeling and Problem Solving Environments Cliff Shaffer Department of Computer Science Virginia Tech Blacksburg, VA 24061
Pathway Modeling and Problem Solving Environments Cliff Shaffer Department of Computer Science Virginia Tech Blacksburg, VA 24061
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Pathway Modeling and Problem Solving Environments PowerPoint PPT Presentation
Pathway Modeling and Problem Solving Environments - Pathway Modeling and Problem Solving Environments Cliff Shaffer Department of Computer Science Virginia Tech Blacksburg, VA 24061
Pathway Modeling and Problem Solving Environments Cliff Shaffer Department of Computer Science Virginia Tech Blacksburg, VA 24061
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The DARPA BioSPICE Project Clifford A. Shaffer Department of Computer Science Virginia Tech PowerPoint PPT Presentation
The DARPA BioSPICE Project Clifford A. Shaffer Department of Computer Science Virginia Tech - The DARPA BioSPICE Project Clifford A. Shaffer Department of Computer Science Virginia Tech
The DARPA BioSPICE Project Clifford A. Shaffer Department of Computer Science Virginia Tech
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The DARPA BioSPICE Project Clifford A. Shaffer Department of Computer Science Virginia Tech PowerPoint PPT Presentation
The DARPA BioSPICE Project Clifford A. Shaffer Department of Computer Science Virginia Tech - Biology: John Tyson, Jill Sible, Kathy Chen, Laurence Calzone, Emery Conrad, ... Cell Cycle (John Tyson) Circadian Rhythms. synthesis. degradation. synthesis ...
Biology: John Tyson, Jill Sible, Kathy Chen, Laurence Calzone, Emery Conrad, ... Cell Cycle (John Tyson) Circadian Rhythms. synthesis. degradation. synthesis ...
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Converting Macromolecular Regulatory Models from Deterministic to Stochastic Formulation PowerPoint PPT Presentation
Converting Macromolecular Regulatory Models from Deterministic to Stochastic Formulation - Pengyuan Wang, Ranjit Randhawa, Clifford A. Shaffer, Yang Cao, and ... One method: Use ODEs that describe the rate at which each protein ... CPU-intensive. ...
Pengyuan Wang, Ranjit Randhawa, Clifford A. Shaffer, Yang Cao, and ... One method: Use ODEs that describe the rate at which each protein ... CPU-intensive. ...
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User Interface Paradigms for PowerPoint PPT Presentation
User Interface Paradigms for - User Interface Paradigms for Describing Pathway Models Cliff Shaffer Department of Computer Science Virginia Tech
User Interface Paradigms for Describing Pathway Models Cliff Shaffer Department of Computer Science Virginia Tech
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Computational%20Biology%20and%20Bioinformatics%20in%20Computer%20Science PowerPoint PPT Presentation
Computational%20Biology%20and%20Bioinformatics%20in%20Computer%20Science - Anil Vullikanti (VBI, CS) Layne Watson. Liqing Zhang ... Anil Vullikanti (Fall 2004) VBI and CS. Yang Cao (January, 2006) CS bioinformatics hire ...
Anil Vullikanti (VBI, CS) Layne Watson. Liqing Zhang ... Anil Vullikanti (Fall 2004) VBI and CS. Yang Cao (January, 2006) CS bioinformatics hire ...
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User Interface Paradigms for PowerPoint PPT Presentation
User Interface Paradigms for - Preparing a model for the purpose of simulation. Figuring out ... beings can have widely divergent opinions on what interface paradigm makes them productive. ...
Preparing a model for the purpose of simulation. Figuring out ... beings can have widely divergent opinions on what interface paradigm makes them productive. ...
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Multistate Modeling and Simulation for Regulatory Networks PowerPoint PPT Presentation
Multistate Modeling and Simulation for Regulatory Networks - ... (pure population-based approach) Full ... Tahoma Arial Wingdings Calibri Symbol Textured design template Multistate Modeling and Simulation for ...
... (pure population-based approach) Full ... Tahoma Arial Wingdings Calibri Symbol Textured design template Multistate Modeling and Simulation for ...
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Pathway Modeling and Problem Solving Environments PowerPoint PPT Presentation
Pathway Modeling and Problem Solving Environments - Modeling Techniques ... Current models of simple organisms contain a few 10s of equations. To model mammalian systems might require two orders of magnitude in ...
Modeling Techniques ... Current models of simple organisms contain a few 10s of equations. To model mammalian systems might require two orders of magnitude in ...
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Pathway Modeling and Problem Solving Environments PowerPoint PPT Presentation
Pathway Modeling and Problem Solving Environments - Search literature (databases), Lab notebooks. Define/modify models. A user ... Collect data on paper lab notebooks. Convert to differential equations by hand ...
Search literature (databases), Lab notebooks. Define/modify models. A user ... Collect data on paper lab notebooks. Convert to differential equations by hand ...
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The Emergence of Systems Biology PowerPoint PPT Presentation
The Emergence of Systems Biology - Title: The Biologist's Workbench Author: Vijay Saraswat Last modified by: Vijay Saraswat Created Date: 10/18/2001 6:49:51 AM Document presentation format
Title: The Biologist's Workbench Author: Vijay Saraswat Last modified by: Vijay Saraswat Created Date: 10/18/2001 6:49:51 AM Document presentation format
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Composition and Aggregation for Molecular Network Modeling PowerPoint PPT Presentation
Composition and Aggregation for Molecular Network Modeling - Title: PowerPoint Presentation Last modified by: ranj man Document presentation format: Custom Company: ranj man Other titles: Arial Times New Roman Helvetica Arial ...
Title: PowerPoint Presentation Last modified by: ranj man Document presentation format: Custom Company: ranj man Other titles: Arial Times New Roman Helvetica Arial ...
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Effective Biological Simulation Techniques PowerPoint PPT Presentation
Effective Biological Simulation Techniques - Effective Biological Simulation Techniques ... Modelling, Simulation and Visualisation. Simulation of Chemical Reaction systems ... lysis-lysogen pathway) ...
Effective Biological Simulation Techniques ... Modelling, Simulation and Visualisation. Simulation of Chemical Reaction systems ... lysis-lysogen pathway) ...
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Software Tools in Systems Biology PowerPoint PPT Presentation
Software Tools in Systems Biology - shafts and gears handled the brainwork with precision unmatched by any. contemporaneous machine. ... developed after World War II put the analyzer out to ...
shafts and gears handled the brainwork with precision unmatched by any. contemporaneous machine. ... developed after World War II put the analyzer out to ...
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SYSTEMS BIOLOGY PowerPoint PPT Presentation
SYSTEMS BIOLOGY - 'Systems biology is the coordinated study of biological ... Human, rat and canine expression profiles of just under 40 genes have been examined thus far. ...
'Systems biology is the coordinated study of biological ... Human, rat and canine expression profiles of just under 40 genes have been examined thus far. ...
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Research Topics in Computational and Mathematical Biology PowerPoint PPT Presentation
Research Topics in Computational and Mathematical Biology - A. Cornish-Bowden, M.L. Cardenas: Metabolic balance sheets, Nature 420 (14/11/02) ... Traditional focus of math modelling: kinetic models ... Key fact about EFMs: ...
A. Cornish-Bowden, M.L. Cardenas: Metabolic balance sheets, Nature 420 (14/11/02) ... Traditional focus of math modelling: kinetic models ... Key fact about EFMs: ...
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Why Discrete Stochastic Simulation PowerPoint PPT Presentation
Why Discrete Stochastic Simulation - Polarization in yeast mating T. M. Yi, UC Irvine ... We need a collection of community models! Why? Facilitate development and extension of models ...
Polarization in yeast mating T. M. Yi, UC Irvine ... We need a collection of community models! Why? Facilitate development and extension of models ...
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SBML, BioSPICE Emerging Standards and Platforms for Systems Biology PowerPoint PPT Presentation
SBML, BioSPICE Emerging Standards and Platforms for Systems Biology - (Easy-to-use) Formula: Second approximation (MPI Magdeburg graphic, 2002) ... Testing, refining and validating the models using a range of cell experiments ...
(Easy-to-use) Formula: Second approximation (MPI Magdeburg graphic, 2002) ... Testing, refining and validating the models using a range of cell experiments ...
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FROM PATHWAYS DATABASES TO NETWORK MODELS PowerPoint PPT Presentation
FROM PATHWAYS DATABASES TO NETWORK MODELS - ... S transition in the mammalian cell cycle. From a qualitative network to a kinetic ... eigenvalues are functions of cycles only. 50. Hurwitz determinants D1 = a1 ...
... S transition in the mammalian cell cycle. From a qualitative network to a kinetic ... eigenvalues are functions of cycles only. 50. Hurwitz determinants D1 = a1 ...
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Dr' Eduardo Mendoza PowerPoint PPT Presentation
Dr' Eduardo Mendoza - Most of the images are 're-used' from presentations at the last (May 03) ... StochSim (Morton-Firth/Bray, Cambridge U) Virtual Cell (Schaff, U Connecticut) ...
Most of the images are 're-used' from presentations at the last (May 03) ... StochSim (Morton-Firth/Bray, Cambridge U) Virtual Cell (Schaff, U Connecticut) ...
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