Contributions to Release 3

1
Contributions to Release 3

• Software Components
• JigCell Model Builder
• JigCell Run Manager
• JigCell Comparator
• Infrastruture
• SBML Level 2 parser
• Simulator API demo
• Time series data format standard

2
Demo

• Marc Vass, Nick Allen
• Full set of components operating on Frog egg
  extract model
• Can show/discuss SBML parser to those interested
  in the details
• Demonstration of Budding Yeast Model website

3
Plans Summer 03

• Now that we have full end-to-end prototype
  components for modeling, our main goal for the
  next 3 months is to do intensive refinement.
• Process intensive interaction of programmers
  with modelers
• Direct suppport for an actual modeling task.

4
Plans 12 Months

• Revised components
• New analysis interfaces (comparator)
• Improved SBML support software
• Integrated model builder with BSP
• Integrated parameter estimation
• Integrated stochastic simulation support