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MOLDEN: a pre- and post- processing program PowerPoint PPT Presentation
MOLDEN: a pre- and post- processing program - Direct Visualization of Reactionpaths and Vibrations ... Molden in Web Courses/Publications. Web Tutorials in Chemistry (WETCHE,CMBI) ...
Direct Visualization of Reactionpaths and Vibrations ... Molden in Web Courses/Publications. Web Tutorials in Chemistry (WETCHE,CMBI) ...
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Quantitative Structure-Activity Relationships (QSAR) Comparative Molecular Field Analysis (CoMFA) PowerPoint PPT Presentation
Quantitative Structure-Activity Relationships (QSAR) Comparative Molecular Field Analysis (CoMFA) - ... cmbi ISIS/Draw Sketch Microsoft Graph 2000 Chart Quantitative Structure-Activity ... to Property From Structure to Property QSAR: Which Relationship?
... cmbi ISIS/Draw Sketch Microsoft Graph 2000 Chart Quantitative Structure-Activity ... to Property From Structure to Property QSAR: Which Relationship?
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Pathways PowerPoint PPT Presentation
Pathways - M.A. Ott (CMBI) Pathways & Molecules Contents Enzymes and Metabolites Metabolic Pathways: Cholesterol Biosynthesis Metabolic Disorders BioMeta Database ...
M.A. Ott (CMBI) Pathways & Molecules Contents Enzymes and Metabolites Metabolic Pathways: Cholesterol Biosynthesis Metabolic Disorders BioMeta Database ...
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CMBI PowerPoint PPT Presentation
CMBI - Sequence similarity, Homology has the largest relevance for ... If A is orthologous to B and B is orthologous to C than A is not necessarily orthologous to C ...
Sequence similarity, Homology has the largest relevance for ... If A is orthologous to B and B is orthologous to C than A is not necessarily orthologous to C ...
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Validation of NMRderived structures PowerPoint PPT Presentation
Validation of NMRderived structures - Bond lengths, bond angles, chirality, omega angles, side chain planarity. Overall quality: ... Distorted C -chirality. D-amino acid. Chris Spronk CMBI 2003 ...
Bond lengths, bond angles, chirality, omega angles, side chain planarity. Overall quality: ... Distorted C -chirality. D-amino acid. Chris Spronk CMBI 2003 ...
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The Genome Gamble, Knowledge or Carnage PowerPoint PPT Presentation
The Genome Gamble, Knowledge or Carnage - ... Leading the Way @ Organon. Tim Hulsen, Oss, November ... (only accessible from Organon, CMBI and SARA) 10 (3) Testing the advantages of our ortholog set ...
... Leading the Way @ Organon. Tim Hulsen, Oss, November ... (only accessible from Organon, CMBI and SARA) 10 (3) Testing the advantages of our ortholog set ...
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Nitrogen Cycle PowerPoint PPT Presentation
Nitrogen Cycle - Nitrosomonas autotropic bacteria converts ammonia to nitrite NH3 --- NO2- Nitrobactor autotropic bacteria convert Nitrite to Nitrate. NO2- --- NO3- The Cycle ...
Nitrosomonas autotropic bacteria converts ammonia to nitrite NH3 --- NO2- Nitrobactor autotropic bacteria convert Nitrite to Nitrate. NO2- --- NO3- The Cycle ...
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Atoom theorie PowerPoint PPT Presentation
Atoom theorie - Atoom theorie Inleiding Democritus Atoom theorie Atoommodel van Dalton (1808) Atoomtheorie van Dalton Elementen bestaan uit kleine deeltjes, atomen genaamd.
Atoom theorie Inleiding Democritus Atoom theorie Atoommodel van Dalton (1808) Atoomtheorie van Dalton Elementen bestaan uit kleine deeltjes, atomen genaamd.
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Predicting Protein Structure: PowerPoint PPT Presentation
Predicting Protein Structure: - Predicting Protein Structure: Comparative Modeling (homology modeling)
Predicting Protein Structure: Comparative Modeling (homology modeling)
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Pr PowerPoint PPT Presentation
Pr - Acknowledgements. Advanced Course on Bioinformatics and Comparative Genome Analysis ... who accepted our invitations for devoting much of their time and efforts ...
Acknowledgements. Advanced Course on Bioinformatics and Comparative Genome Analysis ... who accepted our invitations for devoting much of their time and efforts ...
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Master PowerPoint PPT Presentation
Master - Master s programme in Bioinformatics Bio-tools for the Future International 2-year Bioinformatics Master s Programme * Het schema kan worden aangepast en ...
Master s programme in Bioinformatics Bio-tools for the Future International 2-year Bioinformatics Master s Programme * Het schema kan worden aangepast en ...
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PROMoter SCanning/ANalysis tool PowerPoint PPT Presentation
PROMoter SCanning/ANalysis tool - Creating a tool to analyse a set of putative promoter ... Most cDNAs lack precies information of 5' termini. Oligo-capping method - full-length cDNAs. ...
Creating a tool to analyse a set of putative promoter ... Most cDNAs lack precies information of 5' termini. Oligo-capping method - full-length cDNAs. ...
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Structure validation PowerPoint PPT Presentation
Structure validation - Structure validation. Everything that can go wrong, will go wrong. Everything that could go wrong has ... Hexamer presented as monomer. Occupancies above 1.0. ...
Structure validation. Everything that can go wrong, will go wrong. Everything that could go wrong has ... Hexamer presented as monomer. Occupancies above 1.0. ...
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Analysis of SAGE Data: An Introduction PowerPoint PPT Presentation
Analysis of SAGE Data: An Introduction - Analysis of SAGE Data: An Introduction Kevin R. Coombes Section of Bioinformatics
Analysis of SAGE Data: An Introduction Kevin R. Coombes Section of Bioinformatics
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Validation of NMR Structures Jurgen Doreleijers, Mia Raves, Ton Rullmann, Gert Vriend, Rob Kaptein a PowerPoint PPT Presentation
Validation of NMR Structures Jurgen Doreleijers, Mia Raves, Ton Rullmann, Gert Vriend, Rob Kaptein a - Validation of NMR Structures. Jurgen Doreleijers, Mia Raves, Ton Rullmann, Gert ... No labile protons. Arginine. Tyrosine. Example: HU Protein ...
Validation of NMR Structures. Jurgen Doreleijers, Mia Raves, Ton Rullmann, Gert ... No labile protons. Arginine. Tyrosine. Example: HU Protein ...
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Benchmarking%20Orthology%20in%20Eukaryotes PowerPoint PPT Presentation
Benchmarking%20Orthology%20in%20Eukaryotes - ... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...
... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...
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Spettroscopia di risonanza magnetica nucleare PowerPoint PPT Presentation
Spettroscopia di risonanza magnetica nucleare - Spettroscopia di risonanza magnetica nucleare Docente: Dott.ssa Francesca Mocci Dipartimento di Scienze Chimiche, Cittadella Universitaria di Monserrato
Spettroscopia di risonanza magnetica nucleare Docente: Dott.ssa Francesca Mocci Dipartimento di Scienze Chimiche, Cittadella Universitaria di Monserrato
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Membrane Proteins PowerPoint PPT Presentation
Membrane Proteins - Practicality of membrane protein simulations Dr Phil Biggin Dept. of Biochemistry University of Oxford phil@biop.ox.ac.uk Membrane Proteins Why?
Practicality of membrane protein simulations Dr Phil Biggin Dept. of Biochemistry University of Oxford phil@biop.ox.ac.uk Membrane Proteins Why?
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'A bioinformatic Problem Solving Environment in the e-BioLab' VL-e Sub Program 1.5: Bioinformatics PowerPoint PPT Presentation
'A bioinformatic Problem Solving Environment in the e-BioLab' VL-e Sub Program 1.5: Bioinformatics - Where in the Virtual Laboratory for e-Science? Generic Virtual Laboratory ... UCSC genome browser snapshot. Result: Correlation between histone modification and ...
Where in the Virtual Laboratory for e-Science? Generic Virtual Laboratory ... UCSC genome browser snapshot. Result: Correlation between histone modification and ...
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Evolution of the immune system from model organism to man PowerPoint PPT Presentation
Evolution of the immune system from model organism to man - Tim Hulsen1, Wilco W.M. Fleuren1, Peter M.A. Groenen2 1CMBI, Radboud University Nijmegen Medical Centre, Nijmegen 2MDI, Organon NV, Oss Introduction
Tim Hulsen1, Wilco W.M. Fleuren1, Peter M.A. Groenen2 1CMBI, Radboud University Nijmegen Medical Centre, Nijmegen 2MDI, Organon NV, Oss Introduction
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VIRUSOLOGIJA PowerPoint PPT Presentation
VIRUSOLOGIJA - Deltaretrovirus BLV, Human T-Lymphotropic Virus 1 ... from cell to cell by the ... Zivis Lentivirus Human immunodeficiency virus 1 Z d t ji ...
Deltaretrovirus BLV, Human T-Lymphotropic Virus 1 ... from cell to cell by the ... Zivis Lentivirus Human immunodeficiency virus 1 Z d t ji ...
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Homology Modelling PowerPoint PPT Presentation
Homology Modelling - CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS TECHNICAL UNIVERSITY ... techniques to reduce time (from months to days) and cost (from $100.000 to $20.000/structure) ...
CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS TECHNICAL UNIVERSITY ... techniques to reduce time (from months to days) and cost (from $100.000 to $20.000/structure) ...
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Creating the right chemistry in Pathways PowerPoint PPT Presentation
Creating the right chemistry in Pathways - Systems biology ...not in ten years. Pathways which? ... Tautomerism (variable positions of hydrogens) Other 'chemical' flexibility. Protonation state ...
Systems biology ...not in ten years. Pathways which? ... Tautomerism (variable positions of hydrogens) Other 'chemical' flexibility. Protonation state ...
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Bioinformatics Werkbespreking 2006-11-07 PowerPoint PPT Presentation
Bioinformatics Werkbespreking 2006-11-07 - Bioinformatics Werkbespreking 2006-11-07. 1 PhyloPat: phylogenetic pattern ... BeNeLux BioInformatics Conference 2006. Introduction (1) ...
Bioinformatics Werkbespreking 2006-11-07. 1 PhyloPat: phylogenetic pattern ... BeNeLux BioInformatics Conference 2006. Introduction (1) ...
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Using CDK applications in the BioMeta database PowerPoint PPT Presentation
Using CDK applications in the BioMeta database - 'Creating the right chemistry' in Pathways. M.A. Ott. Enzymes don't ... FAD, FADH2. FMN, FMNH2. SAM, SAH. Coenzyme A. Glutamate/2-Oxoglutarate. Phosphorylation ...
'Creating the right chemistry' in Pathways. M.A. Ott. Enzymes don't ... FAD, FADH2. FMN, FMNH2. SAM, SAH. Coenzyme A. Glutamate/2-Oxoglutarate. Phosphorylation ...
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GPCRs, Drugs, Sequences and other things we dont understand PowerPoint PPT Presentation
GPCRs, Drugs, Sequences and other things we dont understand - GPCRs, Drugs, Sequences and other things we dont understand
GPCRs, Drugs, Sequences and other things we dont understand
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Prediction of protein function and pathways in the genome era PowerPoint PPT Presentation
Prediction of protein function and pathways in the genome era - Prediction of protein function and pathways in the genome era. Toni Gabald n Estevan ... Classic method: function prediction by homology. No homolog (orfans) ...
Prediction of protein function and pathways in the genome era. Toni Gabald n Estevan ... Classic method: function prediction by homology. No homolog (orfans) ...
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Bioinformatics Werkbespreking 20061107 PowerPoint PPT Presentation
Bioinformatics Werkbespreking 20061107 - BeNeLux BioInformatics Conference 2006. Introduction (1) Phylogenetic patterns show presence/absence of genes over a certain set of species: ...
BeNeLux BioInformatics Conference 2006. Introduction (1) Phylogenetic patterns show presence/absence of genes over a certain set of species: ...
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Predicting and Classifying Protein Structures PowerPoint PPT Presentation
Predicting and Classifying Protein Structures - RMSD = 0.2 dream on. A Good Protein Structure.. X-ray ... Results posted on the web and updated weekly. http://cubic.bioc.columbia.edu/eva. Lecture 3.2 ...
RMSD = 0.2 dream on. A Good Protein Structure.. X-ray ... Results posted on the web and updated weekly. http://cubic.bioc.columbia.edu/eva. Lecture 3.2 ...
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In silico ADME/Tox in drug design PowerPoint PPT Presentation
In silico ADME/Tox in drug design - Title: In silico methods: ADMET vs receptor affinity Author: Akzo Nobel Last modified by: ridderl Created Date: 1/28/2004 8:42:05 AM Document presentation format
Title: In silico methods: ADMET vs receptor affinity Author: Akzo Nobel Last modified by: ridderl Created Date: 1/28/2004 8:42:05 AM Document presentation format
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Bioinformatics and Chips PowerPoint PPT Presentation
Bioinformatics and Chips - Some questions that can be answered with a chip experiment can also be answered ... RA TEETER M.M., MAZER J.A., L'ITALIEN J.J. ...
Some questions that can be answered with a chip experiment can also be answered ... RA TEETER M.M., MAZER J.A., L'ITALIEN J.J. ...
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Protein Structure Prediction PowerPoint PPT Presentation
Protein Structure Prediction - Protein Structure Prediction Sequence database searching Domain assignment Multiple sequence alignment Comparative or homology modeling Secondary structure prediction
Protein Structure Prediction Sequence database searching Domain assignment Multiple sequence alignment Comparative or homology modeling Secondary structure prediction
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Assessment and Validation Tools PowerPoint PPT Presentation
Assessment and Validation Tools - Assessment and Validation Tools
Assessment and Validation Tools
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Protein Secondary Structure Prediction PowerPoint PPT Presentation
Protein Secondary Structure Prediction - 8 11 A E E A 19 0A 63 -2,-0.4 2,-0.3 11,-0.2 11,-0.2 -0.933 4.4 175.4-139.1 156. ... Assumes amino acids up to 8 residues on each side influence the ss of the ...
8 11 A E E A 19 0A 63 -2,-0.4 2,-0.3 11,-0.2 11,-0.2 -0.933 4.4 175.4-139.1 156. ... Assumes amino acids up to 8 residues on each side influence the ss of the ...
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Markerii moleculari si Biotehnologia medicala PowerPoint PPT Presentation
Markerii moleculari si Biotehnologia medicala - UNIVERSITATEA DE STIINTE AGRICOLE SI MEDICINA VETERINARA, CLUJ-NAPOCA, ROMANIA Markerii moleculari i Biotehnologia medical Doru PAMFIL UNIVERSITATEA DE STIINTE ...
UNIVERSITATEA DE STIINTE AGRICOLE SI MEDICINA VETERINARA, CLUJ-NAPOCA, ROMANIA Markerii moleculari i Biotehnologia medical Doru PAMFIL UNIVERSITATEA DE STIINTE ...
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Protein Secondary Structures PowerPoint PPT Presentation
Protein Secondary Structures - Protein Secondary Structures Assignment and prediction Secondary Structure Elements Use of secondary structure Classification of protein structures Definition of ...
Protein Secondary Structures Assignment and prediction Secondary Structure Elements Use of secondary structure Classification of protein structures Definition of ...
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Protein structure prediction: The holy grail of bioinformatics PowerPoint PPT Presentation
Protein structure prediction: The holy grail of bioinformatics - Protein structure prediction: The holy grail of bioinformatics * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * No long range affects * * * IgG ...
Protein structure prediction: The holy grail of bioinformatics * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * No long range affects * * * IgG ...
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Introduction to Proteomics tools in Homology Modelingweb PowerPoint PPT Presentation
Introduction to Proteomics tools in Homology Modelingweb - Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...
Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...
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PROMoter SCanningANalysis tool PowerPoint PPT Presentation
PROMoter SCanningANalysis tool - ... tool to analyse a set of putative promoter sequences and recognize known and ... Sequences from Sergei Denissov, Molecular Biology (NCMLS) ...
... tool to analyse a set of putative promoter sequences and recognize known and ... Sequences from Sergei Denissov, Molecular Biology (NCMLS) ...
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Biological Networks PowerPoint PPT Presentation
Biological Networks - Biological Networks Graph Theory and Matrix Theory Ka-Lok Ng Department of Bioinformatics Asia University Content Topological Statistics of the protein ...
Biological Networks Graph Theory and Matrix Theory Ka-Lok Ng Department of Bioinformatics Asia University Content Topological Statistics of the protein ...
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3D Structure Prediction and Assessment PowerPoint PPT Presentation
3D Structure Prediction and Assessment - Homology Modelling. Based on the observation that 'Similar sequences exhibit similar structures' ... Homology Modelling ... to big error in structural model ...
Homology Modelling. Based on the observation that 'Similar sequences exhibit similar structures' ... Homology Modelling ... to big error in structural model ...
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Protein Structure PowerPoint PPT Presentation
Protein Structure - Homology: Similarity in characteristics resulting from shared ancestry. ... LIBRA I. http://www.ddbj.nig.ac.jp/htmls/Email/libra/LIBRA_I.html. UCLA DOE ...
Homology: Similarity in characteristics resulting from shared ancestry. ... LIBRA I. http://www.ddbj.nig.ac.jp/htmls/Email/libra/LIBRA_I.html. UCLA DOE ...
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Cancer Biology: targeting therapy to maximize benefit and minimize side effects PowerPoint PPT Presentation
Cancer Biology: targeting therapy to maximize benefit and minimize side effects - What are VEGF, erbb2 and BCR-ABL? New punk rock bands ... Genetic marker predicts early onset of prostate cancer: T allele of Met160Val ...
What are VEGF, erbb2 and BCR-ABL? New punk rock bands ... Genetic marker predicts early onset of prostate cancer: T allele of Met160Val ...
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Chapter 13: Spectroscopy PowerPoint PPT Presentation
Chapter 13: Spectroscopy - Infrared (IR) Spectroscopy (Sections 13.20-13.22) ... UV-Vis: valance electron transitions - gives information about p-bonds and conjugated systems ...
Infrared (IR) Spectroscopy (Sections 13.20-13.22) ... UV-Vis: valance electron transitions - gives information about p-bonds and conjugated systems ...
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CHEMICAL BIOLOGY GROUP PowerPoint PPT Presentation
CHEMICAL BIOLOGY GROUP - CHEMICAL BIOLOGY GROUP
CHEMICAL BIOLOGY GROUP
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Analysis of SAGE Data: An Introduction PowerPoint PPT Presentation
Analysis of SAGE Data: An Introduction - 2.(b) Synthesize ds cDNA. 2.(a) Add biotin-labeled dT primer: ... 100000 sims per transcript for relative likelihood of seeing observed difference ...
2.(b) Synthesize ds cDNA. 2.(a) Add biotin-labeled dT primer: ... 100000 sims per transcript for relative likelihood of seeing observed difference ...
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GENETIC ENGINEERING PowerPoint PPT Presentation
GENETIC ENGINEERING - GENETIC ENGINEERING ... Agriculture Transgenics On the Market Source: USDA Insect resistant ... The gene that encodes the toxin protein was inserted into plants.
GENETIC ENGINEERING ... Agriculture Transgenics On the Market Source: USDA Insect resistant ... The gene that encodes the toxin protein was inserted into plants.
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Predicting interactions between genes based on genome sequence comparisons The PowerPoint PPT Presentation
Predicting interactions between genes based on genome sequence comparisons The - H. s. a. p. i. e. n. s. C. e. l. e. g. a. n. H. pylori. D.melan. cyaY Yfh1. hscB Jac1. hscA. ssq1. Nfu1. iscA Isa1-2. fdx Yah1. Arh1. RnaM ...
H. s. a. p. i. e. n. s. C. e. l. e. g. a. n. H. pylori. D.melan. cyaY Yfh1. hscB Jac1. hscA. ssq1. Nfu1. iscA Isa1-2. fdx Yah1. Arh1. RnaM ...
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Grid Computing PowerPoint PPT Presentation
Grid Computing - Shipping High-Energy Physics data, be it simulated or measured, ... A new system, complete with all application software, is up and running in 15 minutes. ...
Shipping High-Energy Physics data, be it simulated or measured, ... A new system, complete with all application software, is up and running in 15 minutes. ...
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Lecture 9.2: Homology and Structural Similarity (What do when you have no structure ...) PowerPoint PPT Presentation
Lecture 9.2: Homology and Structural Similarity (What do when you have no structure ...) - ... Fully automated protein structure prediction using ISITES, HMMSTR and ROSETTA. ... Rosetta: Monte carlo fragment move based structure generation, Bayesian ...
... Fully automated protein structure prediction using ISITES, HMMSTR and ROSETTA. ... Rosetta: Monte carlo fragment move based structure generation, Bayesian ...
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Protein World PowerPoint PPT Presentation
Protein World - Transcription' and translation' of specific regions of the genome leads to ... Structural classifications: SCOP, CATH, FSSP. Why should there be another database? ...
Transcription' and translation' of specific regions of the genome leads to ... Structural classifications: SCOP, CATH, FSSP. Why should there be another database? ...
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An%20orthology%20case%20study:%20the%20trypsin%20inhibition%20pathway PowerPoint PPT Presentation
An%20orthology%20case%20study:%20the%20trypsin%20inhibition%20pathway - Orthology: describes 'the evolutionary relationship between homologous genes ... Orthology is often used for the transfer of functional annotation from proteins ...
Orthology: describes 'the evolutionary relationship between homologous genes ... Orthology is often used for the transfer of functional annotation from proteins ...
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An orthology case study: the trypsin inhibition pathway PowerPoint PPT Presentation
An orthology case study: the trypsin inhibition pathway - ... genes whose independent evolution reflects a speciation event' (Fitch, 1970) ... Orthology is often used for the transfer of functional annotation from proteins ...
... genes whose independent evolution reflects a speciation event' (Fitch, 1970) ... Orthology is often used for the transfer of functional annotation from proteins ...
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Bioinformatics at CESGBMRB Jurgen F' Doreleijers, John Markley, Eldon L' Ulrich PowerPoint PPT Presentation
Bioinformatics at CESGBMRB Jurgen F' Doreleijers, John Markley, Eldon L' Ulrich - Mega Blasting with Condor ... Non-interactive version of Blast installed on Condor cluster developed at the CS ... sequences for Condor Blast are updated before ...
Mega Blasting with Condor ... Non-interactive version of Blast installed on Condor cluster developed at the CS ... sequences for Condor Blast are updated before ...
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Why is pairwise sequence alignment different PowerPoint PPT Presentation
Why is pairwise sequence alignment different - BLASTP 2.2.6 [Apr-09-2003] RID: 1068830459-16741-16367211346.BLASTQ3 ... http://bioweb.pasteur.fr/seqanal/blast/intro-uk.html#psiblast ...
BLASTP 2.2.6 [Apr-09-2003] RID: 1068830459-16741-16367211346.BLASTQ3 ... http://bioweb.pasteur.fr/seqanal/blast/intro-uk.html#psiblast ...
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Pathways PowerPoint PPT Presentation
Pathways - http://www.genome.ad.jp/kegg/ http://www.brenda.uni-koeln.de ... EMP enzymology and metabolism data. MetaCyc metabolic pathways ...
http://www.genome.ad.jp/kegg/ http://www.brenda.uni-koeln.de ... EMP enzymology and metabolism data. MetaCyc metabolic pathways ...
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