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The CCPN Project PowerPoint PPT Presentation
The CCPN Project - Data is lost' along the way. Dedicated converters needed ... Bonvin (Haddock, RECOORD) Vriend, Vuister (Queen, What-Check) Henrick, Vranken (NMR database) ...
Data is lost' along the way. Dedicated converters needed ... Bonvin (Haddock, RECOORD) Vriend, Vuister (Queen, What-Check) Henrick, Vranken (NMR database) ...
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CCP4 and BIOXHIT PowerPoint PPT Presentation
CCP4 and BIOXHIT - 'To fill the need for project tracking within the BIOXHIT structure solution software pipeline' ... Talk to other projects for possible links/requirements ...
'To fill the need for project tracking within the BIOXHIT structure solution software pipeline' ... Talk to other projects for possible links/requirements ...
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CCP4%20 PowerPoint PPT Presentation
CCP4%20 - CCP4 ... Software for Macromolecular Crystallography. ABOUT CCP4 ... The Suite ... development of software for protein and macromolecular crystallography in the UK. ...
CCP4 ... Software for Macromolecular Crystallography. ABOUT CCP4 ... The Suite ... development of software for protein and macromolecular crystallography in the UK. ...
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An Introduction to the CCP4 Software Suite: PowerPoint PPT Presentation
An Introduction to the CCP4 Software Suite: - watch for announcements when update becomes available. 23rd August 2005 ... topdraw - sketchpad for drawing protein topology cartoons (see right) ...
watch for announcements when update becomes available. 23rd August 2005 ... topdraw - sketchpad for drawing protein topology cartoons (see right) ...
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CCP4 Version 4'0 ''' PowerPoint PPT Presentation
CCP4 Version 4'0 ''' - ... complementarity between influzena virus tern N9 neuraminidase (right) and the ... The interface is shown opened out in book-like fashion, with Sc values coloured ...
... complementarity between influzena virus tern N9 neuraminidase (right) and the ... The interface is shown opened out in book-like fashion, with Sc values coloured ...
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A united Platform for NMR: CCPN PowerPoint PPT Presentation
A united Platform for NMR: CCPN - Developers at University of Cambridge and EBI in UK. Unifying ... Alan da Silva. EBI, Hinxton. Kim Henrick. John Ionides. Wim ... Alex Grishaev ...
Developers at University of Cambridge and EBI in UK. Unifying ... Alan da Silva. EBI, Hinxton. Kim Henrick. John Ionides. Wim ... Alex Grishaev ...
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CCP4i: activities and plans PowerPoint PPT Presentation
CCP4i: activities and plans - e.g. via 'View Files from Job' menu. Not clear how best to implement this: ... Liz Potterton planning to look at reusing Wendy's database handler code for this ...
e.g. via 'View Files from Job' menu. Not clear how best to implement this: ... Liz Potterton planning to look at reusing Wendy's database handler code for this ...
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CCP4i: Recent Developments, PowerPoint PPT Presentation
CCP4i: Recent Developments, - Suite of programs for automated structure solution based on the CCP4i infrastructure. Developed by Steven ... Windows drives can also be browsed (e.g. C: or D: ...
Suite of programs for automated structure solution based on the CCP4i infrastructure. Developed by Steven ... Windows drives can also be browsed (e.g. C: or D: ...
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Other CCP4 Activities ... PowerPoint PPT Presentation
Other CCP4 Activities ... - CCP4 produces a bi-annual Newsletter which contains articles of general interest ... CCP4 organises an annual Study Weekend which each year covers a particular ...
CCP4 produces a bi-annual Newsletter which contains articles of general interest ... CCP4 organises an annual Study Weekend which each year covers a particular ...
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Data collection, data processing and scaling PowerPoint PPT Presentation
Data collection, data processing and scaling - Data collection, data processing and scaling (1) relationship of Mosflm to CCP4 ... when viewed with the CCP4 graph viewer LOGGRAPH, as it contains graphs of ...
Data collection, data processing and scaling (1) relationship of Mosflm to CCP4 ... when viewed with the CCP4 graph viewer LOGGRAPH, as it contains graphs of ...
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Core activities PowerPoint PPT Presentation
Core activities - CCP4 Releases: Charles. Installation issues: ... New agreements use STFC rather than CCLRC. New logo on the web site! ... Releases of CCP4 software suite ...
CCP4 Releases: Charles. Installation issues: ... New agreements use STFC rather than CCLRC. New logo on the web site! ... Releases of CCP4 software suite ...
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Memops Data modelling and automatic code generation PowerPoint PPT Presentation
Memops Data modelling and automatic code generation - similar to CCP4 for X-ray crystallography. Community-based, ... Keller (BIOXDM) thanks Synchrotron Soleil', the Global Phasing Consortium and EU FP6 BIOXHIT' ...
similar to CCP4 for X-ray crystallography. Community-based, ... Keller (BIOXDM) thanks Synchrotron Soleil', the Global Phasing Consortium and EU FP6 BIOXHIT' ...
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The University, St' Andrews PowerPoint PPT Presentation
The University, St' Andrews - St. Andrews University. CCP4 BBSRC SUMMER SCHOOL. 23rd-27th August 1999. Structural Biology ... The University, St. Andrews. Who is CCP4? ...
St. Andrews University. CCP4 BBSRC SUMMER SCHOOL. 23rd-27th August 1999. Structural Biology ... The University, St. Andrews. Who is CCP4? ...
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Project Database Handler PowerPoint PPT Presentation
Project Database Handler - ... system that address the needs both of automated software pipelines, and manual ... The Collaborative Computational Project No 4 (CCP4) is a UK-based software ...
... system that address the needs both of automated software pipelines, and manual ... The Collaborative Computational Project No 4 (CCP4) is a UK-based software ...
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Almost at the end PowerPoint PPT Presentation
Almost at the end - Please come and visit for software demos, questions, freebies ... Please fill in and return the questionnaires in the CCP4 packs ...
Please come and visit for software demos, questions, freebies ... Please fill in and return the questionnaires in the CCP4 packs ...
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Peter J. Briggs, Alun Ashton, Charles Ballard, Martyn Winn and Pryank Patel PowerPoint PPT Presentation
Peter J. Briggs, Alun Ashton, Charles Ballard, Martyn Winn and Pryank Patel - CCLRC Daresbury Laboratory, Warrington, Cheshire WA4 4AD, UK ... also like to thank the many people who have contributed to the project since its inception. ...
CCLRC Daresbury Laboratory, Warrington, Cheshire WA4 4AD, UK ... also like to thank the many people who have contributed to the project since its inception. ...
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Memops Data modelling and automatic code generation PowerPoint PPT Presentation
Memops Data modelling and automatic code generation - Fully automatic code generation from model. Several programming ... Native Anarchy. Convert. Task1. Task2. Convert. Task2. Task1. Task1. Convert. Task3. Convert ...
Fully automatic code generation from model. Several programming ... Native Anarchy. Convert. Task1. Task2. Convert. Task2. Task1. Task1. Convert. Task3. Convert ...
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High-Throughput Crystallography at Monash PowerPoint PPT Presentation
High-Throughput Crystallography at Monash - X-ray image. Mounted crystal Streaming Video (SV) Lab SV. Lab Still Pics. Sensor Data ... Automated X-ray data reduction. Automated processing of the diffraction data ...
X-ray image. Mounted crystal Streaming Video (SV) Lab SV. Lab Still Pics. Sensor Data ... Automated X-ray data reduction. Automated processing of the diffraction data ...
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Aucun titre de diapositive PowerPoint PPT Presentation
Aucun titre de diapositive - Title: Aucun titre de diapositive Author: win98 Last modified by: desbat Created Date: 5/15/2000 9:12:28 PM Document presentation format: Personnalis
Title: Aucun titre de diapositive Author: win98 Last modified by: desbat Created Date: 5/15/2000 9:12:28 PM Document presentation format: Personnalis
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Refinement with REFMAC PowerPoint PPT Presentation
Refinement with REFMAC - Garib N Murshudov York Structural Laboratory Chemistry Department University of York * * # Jelly body Ridge dist sigma 0.01 ridge dist dmax 4.2 # ncs ncsr local # to ...
Garib N Murshudov York Structural Laboratory Chemistry Department University of York * * # Jelly body Ridge dist sigma 0.01 ridge dist dmax 4.2 # ncs ncsr local # to ...
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Dictionary of ligands PowerPoint PPT Presentation
Dictionary of ligands - ...
...
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An Introduction to Mosflm PowerPoint PPT Presentation
An Introduction to Mosflm - integrate single image. index. The X-ray Experiment (1) ... X-ray images. Experimental details (e.g. detector type, direct beam position, wavelength, etc) ...
integrate single image. index. The X-ray Experiment (1) ... X-ray images. Experimental details (e.g. detector type, direct beam position, wavelength, etc) ...
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REFMAC5 PowerPoint PPT Presentation
REFMAC5 - REFMAC5 is a program for the refinement of macromolecular structures. ... [Schomaker & Trueblood (1968) On the rigid-body motion of molecules in. crystals Acta Cryst. ...
REFMAC5 is a program for the refinement of macromolecular structures. ... [Schomaker & Trueblood (1968) On the rigid-body motion of molecules in. crystals Acta Cryst. ...
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A Molecular Replacement Pipeline Garib Murshudov Chemistry Department, University of York PowerPoint PPT Presentation
A Molecular Replacement Pipeline Garib Murshudov Chemistry Department, University of York - A Molecular Replacement Pipeline Garib Murshudov Chemistry Department, University of York Contents Introduction Organisation of BALBES Search model preparation ...
A Molecular Replacement Pipeline Garib Murshudov Chemistry Department, University of York Contents Introduction Organisation of BALBES Search model preparation ...
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Xray Crystallography Workshop PowerPoint PPT Presentation
Xray Crystallography Workshop - Every atom's diffracting power is further reduced at higher ... all atoms in the unit cell relative to the origin. The name of the software we will use for ...
Every atom's diffracting power is further reduced at higher ... all atoms in the unit cell relative to the origin. The name of the software we will use for ...
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A1258567809ZHylP PowerPoint PPT Presentation
A1258567809ZHylP - The key for NEUTRON DIFFRACTION. from submillimetric SINGLE CRYSTALS ... modern structural studies requesting neutron! Neutron high pressure cells (courtesy of ...
The key for NEUTRON DIFFRACTION. from submillimetric SINGLE CRYSTALS ... modern structural studies requesting neutron! Neutron high pressure cells (courtesy of ...
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MrBUMP Molecular Replacement with Bulk Model Preparation PowerPoint PPT Presentation
MrBUMP Molecular Replacement with Bulk Model Preparation - An automation framework for Molecular Replacement. ... The resulting models from molecular replacement are passed to Refmac for restrained refinement. ...
An automation framework for Molecular Replacement. ... The resulting models from molecular replacement are passed to Refmac for restrained refinement. ...
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Funding Partners PowerPoint PPT Presentation
Funding Partners - Divergence at sample 2 mrad x 0.5mrad (HxV) (1mrad acceptance) ... Coot. Grasp. LIGPLOT. MolScript. PyMOL. RasMOL. Raster3D. USF. XtalView. Phasing and Refinement ...
Divergence at sample 2 mrad x 0.5mrad (HxV) (1mrad acceptance) ... Coot. Grasp. LIGPLOT. MolScript. PyMOL. RasMOL. Raster3D. USF. XtalView. Phasing and Refinement ...
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Issues Surrounding the Use of Open-Source PyMOL to Visualize Large Complexes PowerPoint PPT Presentation
Issues Surrounding the Use of Open-Source PyMOL to Visualize Large Complexes - Project Overview. Some 'Biggish' examples. Animations. Intro/Demo (if there's time) ... Free for Academics ... Rendered Movies. Real Time OpenGL Movies. Real ...
Project Overview. Some 'Biggish' examples. Animations. Intro/Demo (if there's time) ... Free for Academics ... Rendered Movies. Real Time OpenGL Movies. Real ...
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Worldwide Protein Data Bank PowerPoint PPT Presentation
Worldwide Protein Data Bank - ... and quality assessment information. Additional information should be available, including: ... however Journals need to check validity of IDCODE ...
... and quality assessment information. Additional information should be available, including: ... however Journals need to check validity of IDCODE ...
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Ligands, dictionary and refinement Garib N Murshudov York Structural Biology Laboratory University of York PowerPoint PPT Presentation
Ligands, dictionary and refinement Garib N Murshudov York Structural Biology Laboratory University of York - Ligands, dictionary and refinement Garib N Murshudov York Structural Biology Laboratory University of York Outline Introduction Dictionary of ligands Sources of ...
Ligands, dictionary and refinement Garib N Murshudov York Structural Biology Laboratory University of York Outline Introduction Dictionary of ligands Sources of ...
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Managing crystallization experiments within PIMS PowerPoint PPT Presentation
Managing crystallization experiments within PIMS - Organizes and manages all data relating to protein crystallization. ... Crystallization and protein production data can be closely integrated in a PIMS database. ...
Organizes and manages all data relating to protein crystallization. ... Crystallization and protein production data can be closely integrated in a PIMS database. ...
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Authors PowerPoint PPT Presentation
Authors - ... handler dbCCP4i is a small server program that handles interactions between the ... much more complexity in these automated systems whilst making the outcome much ...
... handler dbCCP4i is a small server program that handles interactions between the ... much more complexity in these automated systems whilst making the outcome much ...
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MOSFLM version 6 PowerPoint PPT Presentation
MOSFLM version 6 - MOSFLM version 6 ... Improved autoindexing and peak search routines ... is available as both pre-compiled executables for a number of platforms and as ...
MOSFLM version 6 ... Improved autoindexing and peak search routines ... is available as both pre-compiled executables for a number of platforms and as ...
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e-HTPX: A User Perspective PowerPoint PPT Presentation
e-HTPX: A User Perspective - Future Plans for e-HTPX. Merging e-HTPX with other developments ... ISPyB now ESRF-wide standard experiment log. DNA needs improving but desperately needed ...
Future Plans for e-HTPX. Merging e-HTPX with other developments ... ISPyB now ESRF-wide standard experiment log. DNA needs improving but desperately needed ...
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Evaluating the Solution from MrBUMP and Balbes PowerPoint PPT Presentation
Evaluating the Solution from MrBUMP and Balbes - Acknowledgements Fei Long, Alexei Vagin, Paul Young, Andrey Lebedev, Garib Murshudov Balbes and Refmac Martyn Winn, MrBUMP Airlie McCoy, Randy Read ...
Acknowledgements Fei Long, Alexei Vagin, Paul Young, Andrey Lebedev, Garib Murshudov Balbes and Refmac Martyn Winn, MrBUMP Airlie McCoy, Randy Read ...
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Protein Overexpression PowerPoint PPT Presentation
Protein Overexpression - Absolute mass from Wyatt multi-angle light scattering mini ... high-througput robotics facility, with. the capability for nanolitre sitting. and hanging drops ...
Absolute mass from Wyatt multi-angle light scattering mini ... high-througput robotics facility, with. the capability for nanolitre sitting. and hanging drops ...
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e-HTPX PowerPoint PPT Presentation
e-HTPX - eHTPX
eHTPX
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Models of Thermal Motion (mostly) in crystals PowerPoint PPT Presentation
Models of Thermal Motion (mostly) in crystals - Isotropic temperature factors correct for the fact that atoms in ... in coot) ... (show protein in coot) The figure at rights shows. which segments move when ...
Isotropic temperature factors correct for the fact that atoms in ... in coot) ... (show protein in coot) The figure at rights shows. which segments move when ...
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Xray Crystallography Workshop PowerPoint PPT Presentation
Xray Crystallography Workshop - ... positional parameters such that they are not allowed to deviate as much (from ... The RMS deviations from ideal values are a bit misleading, since you use them to ...
... positional parameters such that they are not allowed to deviate as much (from ... The RMS deviations from ideal values are a bit misleading, since you use them to ...
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Worldwide Protein Data Bank PowerPoint PPT Presentation
Worldwide Protein Data Bank - ... Roland L. Dunbrack, Jr., Krzysztof Fidelis, Joachim Frank, Adam Godzik, Kim ... Andrzej Joachimiak, Bernard Heymann, David Jones, John L. Markley, John Moult, ...
... Roland L. Dunbrack, Jr., Krzysztof Fidelis, Joachim Frank, Adam Godzik, Kim ... Andrzej Joachimiak, Bernard Heymann, David Jones, John L. Markley, John Moult, ...
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Fitting atomic models into EM map Alexei Vagin Alexei Vaguine alternative spelling York Structural B PowerPoint PPT Presentation
Fitting atomic models into EM map Alexei Vagin Alexei Vaguine alternative spelling York Structural B - Optical Resolution ( by sfcheck ) Weights for high resolution data and similarity ... Weight of low resolution grows. Low high. Model Similarity. 0 .1 0.2 0.3 0.4 0.5 ...
Optical Resolution ( by sfcheck ) Weights for high resolution data and similarity ... Weight of low resolution grows. Low high. Model Similarity. 0 .1 0.2 0.3 0.4 0.5 ...
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Refinement of Macromolecular structures using REFMAC5 PowerPoint PPT Presentation
Refinement of Macromolecular structures using REFMAC5 - ... after molecular replacement or when refining against data from isomorphous crystals TLS - at medium and end stages of refinement at resolutions up to 1.7-1.6A ...
... after molecular replacement or when refining against data from isomorphous crystals TLS - at medium and end stages of refinement at resolutions up to 1.7-1.6A ...
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Direct Methods PowerPoint PPT Presentation
Direct Methods - Direct Methods By Fan Hai-fu, Institute of Physics, Beijing http://cryst.iphy.ac.cn 1. Introduction 2. Sayre s equation and the tangent formula
Direct Methods By Fan Hai-fu, Institute of Physics, Beijing http://cryst.iphy.ac.cn 1. Introduction 2. Sayre s equation and the tangent formula
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The University, St' Andrews PowerPoint PPT Presentation
The University, St' Andrews - included simulated annealing, all approaches to this point use least squares, ... maps of difficult regions, it seems to reduce bias (simulated anneal omit maps) ...
included simulated annealing, all approaches to this point use least squares, ... maps of difficult regions, it seems to reduce bias (simulated anneal omit maps) ...
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Macromolecular Crystallography and Structural Genomics PowerPoint PPT Presentation
Macromolecular Crystallography and Structural Genomics - Macromolecular Crystallography and Structural Genomics Recent Trends Prof' D' Velmurugan Department
Macromolecular Crystallography and Structural Genomics Recent Trends Prof' D' Velmurugan Department
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Automated collection and processing of macromolecular diffraction data with DNA PowerPoint PPT Presentation
Automated collection and processing of macromolecular diffraction data with DNA - Sasha Popov. Harry Powell (g) Darren Spruce (f) Olof Svensson (f) Graeme ... Alexander Popov (c) Raimond Ravelli (d) Andrew Thompson (e) Collaborating sites ...
Sasha Popov. Harry Powell (g) Darren Spruce (f) Olof Svensson (f) Graeme ... Alexander Popov (c) Raimond Ravelli (d) Andrew Thompson (e) Collaborating sites ...
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Geometric Methods for Improving RNA Structure PowerPoint PPT Presentation
Geometric Methods for Improving RNA Structure - Steric clashes (collisions) occur when non-bonded atoms are too close. d. Ribosome ... Use forward kinematics to remove steric clashes in a dinucleotide ...
Steric clashes (collisions) occur when non-bonded atoms are too close. d. Ribosome ... Use forward kinematics to remove steric clashes in a dinucleotide ...
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Automated phase improvement and model building with Parrot and Buccaneer PowerPoint PPT Presentation
Automated phase improvement and model building with Parrot and Buccaneer - Automated phase improvement and model building with Parrot and Buccaneer Kevin Cowtan cowtan@ysbl.york.ac.uk X-ray structure solution pipeline... Density modification ...
Automated phase improvement and model building with Parrot and Buccaneer Kevin Cowtan cowtan@ysbl.york.ac.uk X-ray structure solution pipeline... Density modification ...
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Coot and Phenix PowerPoint PPT Presentation
Coot and Phenix - Coot and Phenix. They just sound like birds. The PHENIX project ... Paul Adams, Ralf Grosse-Kunstleve, Peter Zwart, Nigel Moriarty, Nicholas Sauter, Pavel Afonine ...
Coot and Phenix. They just sound like birds. The PHENIX project ... Paul Adams, Ralf Grosse-Kunstleve, Peter Zwart, Nigel Moriarty, Nicholas Sauter, Pavel Afonine ...
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Kyoto2008 Crystallographic Computing School PowerPoint PPT Presentation
Kyoto2008 Crystallographic Computing School - Many of the older software developers, like me, have a background in Direct ... Mainframe Lab Mini (MicroVAX) PC/WS. Software Languages ...
Many of the older software developers, like me, have a background in Direct ... Mainframe Lab Mini (MicroVAX) PC/WS. Software Languages ...
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Structure Validation in Chemical Crystallography PowerPoint PPT Presentation
Structure Validation in Chemical Crystallography - Introduction to the Problems that are addressed by Structure Validation in ... did not access) the primary data other than the ORTEP illustration in the paper. ...
Introduction to the Problems that are addressed by Structure Validation in ... did not access) the primary data other than the ORTEP illustration in the paper. ...
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INTRODUCTORY TALK PowerPoint PPT Presentation
INTRODUCTORY TALK - On crystallographic computing from the perspective of a small-molecule ... it also solved all other notoriously unsolvable structures' hanging around in the lab. ...
On crystallographic computing from the perspective of a small-molecule ... it also solved all other notoriously unsolvable structures' hanging around in the lab. ...
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Macromolecular Structure Database group PowerPoint PPT Presentation
Macromolecular Structure Database group - By non stereo substructure. By non stereo superstructure. By exact stereo or non stereo structure ... Optimise and boost the performance of substructure searches ...
By non stereo substructure. By non stereo superstructure. By exact stereo or non stereo structure ... Optimise and boost the performance of substructure searches ...
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