Eutherian phylogeny

1
Eutherian phylogeny
2
Beta globin raw data
Horse VQLSGEEKAAVLA Polar_br
VHLTGEEKSLVTG Ind_Ele VNLTAAEKTQVTN Dromedary
VHLSGDEKNAVHG Cow -MLTAEEKAAVTA Rhino
VDLTAEEKAAVLA Tiger SFLSAEEKGLVNG Tapir
VHLHGDEKAAVLA Deer -MLTAEEKAAVTA African_E
VNLTAAEKTQVTN Pig VHLSAEEKEAVLG
3
Bgobin data - distance
Horse Polar_br Ind_Ele Dromedary Cow
Rhino Tiger Tapir Deer African_E Pig Horse
0 6 8 5 5 3 7
3 5 8 4 Polar_br 0 0
6 5 6 6 6 6 6
6 5 Ind_Ele 0 0 0 8
6 6 8 8 6 0 7 Dromedary
0 0 0 0 8 7 7
4 8 8 4 Cow 0 0
0 0 0 3 7 6 0
6 6 Rhino 0 0 0
0 0 0 7 4 3 6 4 Tiger
0 0 0 0 0 0
0 9 7 8 5 Tapir 0
0 0 0 0 0 0 0 6
8 5 Deer 0 0 0
0 0 0 0 0 0 6
6 African_E 0 0 0 0 0
0 0 0 0 0 7 Pig
0 0 0 0 0 0 0
0 0 0 0
4
Bglobin - UPGMA
5
Nuclear consensus
mtDNA
6
The truth?
Pig Dromedary Cow Deer Tiger Polar
Bear Horse Rhino Tapir Elephants
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Bglobin - Neighbour-joining using PAM distance
----------Polar br ! !
Ind Ele !
-----------------------1 ! !
African E --9------7 ! !
Cow ! ! ------2 !
----6 Deer ! ! !
---------Rhino ! !
--Horse ! ----3
! ----4 -------------Tapir
! ! ! ! -------5
-------------Dromedary ! ! ! --8
-----Pig !
-------------------------------Tiger
8
Parsimony? (3 trees found)
--Tapir
-----------------------7 !
--Dromedary --3 ! !
--------------------Pig ! ! !
! ----10 -----------------Rhino !
! ! ! ! ! --Deer
! --5 -----------8 !
! ! --Cow --1 ! !
! --4 --African E !
! -----9 ! !
! --Ind Ele ! -----2
! ! --Tiger !
-----6 !
--Polar br ! ------------------------
-----Horse
--Tapir
-----------------------7 !
--Dromedary --3 ! !
--------------------Pig ! ! !
! ----10 -----------------Rhino !
! ! ! ! ! --Deer
! --5 -----------8 !
! ! --Cow --1 ! !
! --4 -----Tiger !
! --6 ! ! !
! --African E ! -----2 --9
! ! --Ind Ele !
! !
--------Polar br ! ---------------------
--------Horse