Title: Chapters 4 and 5
1Chapters 4 and 5
- Enzymes and Energy
- Cellular Respiration and Metabolism
2Cells and the Flow of EnergyBioenergetics
- Energy is the ability to do work.
- Living things need to acquire energy this is a
characteristic of life. - Cells use acquired energy to
- Maintain their organization
- Carry out reactions that allow cells to develop,
grow, and reproduce
3Forms of Energy
- There are two basic forms of energy.
- Kinetic energy is the energy of motion.
- Potential energy is stored energy.
- Food eaten has potential energy because it can be
converted into kinetic energy. - Potential energy in foods is chemical energy.
- Organisms can convert chemical energy into a form
of kinetic energy called mechanical energy for
motion.
4Two Laws of Thermodynamics
- The flow of energy in ecosystems occurs in one
direction energy does not cycle. - The two laws of thermodynamics explain this
phenomenon. - First Law Energy cannot be created or destroyed,
but it can be changed from one form to another. - Second Law Energy cannot be changed from one
form to another without loss of usable energy.
5Flow of energy
Only free energy (energy in organized state) can
be used to do work Systems tend to go from states
of higher free energy to states of lower free
energy
6- Energy exists in several different forms.
- When energy transformations occur, energy is
neither created nor destroyed but there is always
loss of usable energy, usually as heat. - For this reason, living things depend on an
outside source of energy. - The ultimate source of energy for ecosystems is
the sun, and this energy is passed from plants to
animals.
7Cells and Entropy
- The term entropy is used to indicate the relative
state of disorganization. - Cells need a constant supply of energy to
maintain their internal organization. - Complex molecules like glucose tend to break
apart into their building blocks, in this case
carbon dioxide and water. - This is because glucose is more organized, and
thus less stable, than its breakdown products. - The result is a loss of potential energy and an
increase in entropy.
8Cells and entropy
9Metabolic Reactions and Energy Transformations
- Metabolism is the sum of all the chemical
reactions that occur in a cell. - Reactants are substances that participate in a
reaction products are substances that form as a
result of a reaction. - A reaction will occur spontaneously if it
increases entropy. - Biologists use the term free energy instead of
entropy for cells.
10- Free energy, G, is the amount of energy to do
work after a reaction has occurred. - ?G (change in free energy) is calculated by
subtracting the free energy of reactants from
that of products. - A negative ?G means the products have less free
energy than the reactants, and the reaction will
occur spontaneously.
11- Exergonic reactions have a negative ?G and energy
is released. - Endergonic reactions have a positive ?G and occur
only if there is an input of energy. - Energy released from exergonic reactions is used
to drive endergonic reactions inside cells. - ATP is the energy carrier between exergonic and
endergonic reactions.
12Endergonic Exergonic Reactions
- Endergonic reactions require input of energy to
proceed - Products contain more free energy than reactants
- Exergonic reactions release energy as they
proceed - Products contain less free energy than reactants
Exergonic Reactions
Fig 4.13
4-25
13ATP Energy for Cells
- ATP (adenosine triphosphate) is the energy
currency of cells. - ATP is constantly regenerated from ADP (adenosine
diphosphate) after energy is expended by the
cell. - Use of ATP by the cell has advantages
- 1) It can be used in many types of reactions.
- 2) When ATP ? ADP P, energy released is
sufficient for cellular needs and little energy
is wasted.
14- 3) ATP is coupled to endergonic reactions in such
a way that it minimizes energy loss. - ATP is a nucleotide made of adenine and ribose
and three phosphate groups. - ATP is called a high-energy compound because a
phosphate group is easily removed.
15The ATP cycle
16Coupled Reactions
- In coupled reactions, energy released by an
exergonic reaction drives an endergonic reaction.
17Coupled reactions
18Function of ATP
- Cells make use of ATP for
- Chemical work ATP supplies energy to synthesize
macromolecules, and therefore the organism - Transport work ATP supplies energy needed to
pump substances across the plasma membrane - Mechanical work ATP supplies energy for
cellular movements
19Two types of metabolic reactions
- Anabolism
- larger molecules are made
- requires energy
- Catabolism
- larger molecules are broken down
- releases energy
4-2
20Anabolism
Anabolism provides the substances needed for
cellular growth and repair
- Dehydration synthesis
- type of anabolic process
- used to make polysaccharides, triglycerides, and
proteins - produces water
4-3
21Anabolism
4-4
22Catabolism
Catabolism breaks down larger molecules into
smaller ones
- Hydrolysis
- a catabolic process
- used to decompose carbohydrates, lipids, and
proteins - water is used
- reverse of dehydration synthesis
4-5
23Catabolism
4-6
24Metabolic Pathways and Enzymes
- Cellular reactions are usually part of a
metabolic pathway, a series of linked reactions,
illustrated as follows - E1 E2 E3 E4 E5
E6 - A ? B ? C ? D ? E ? F ? G
- Here, the letters A-F are reactants or
substrates, B-G are the products in the various
reactions, and E1-E6 are enzymes.
25- An enzyme is a protein molecule that functions as
an organic catalyst to speed a chemical reaction. - An enzyme brings together particular molecules
and causes them to react. - The reactants in an enzymatic reaction are called
the substrates for that enzyme.
26Energy of Activation
- The energy that must be added to cause molecules
to react with one another is called the energy of
activation (Ea). - The addition of an enzyme does not change the
free energy of the reaction, rather an enzyme
lowers the energy of activation.
27Energy of activation (Ea)
28Enzymes
29Enzymes
- Ability of enzymes to lower energy requirement is
due to structure - Enzymes have highly-ordered 3-dimensional shapes
(conformation) - Containing pockets called active sites into which
substrates (reactants) fit - Enzymes act by bringing substrates close together
so they can react
30Enzyme-Substrate Complexes
- Every reaction in a cell requires a specific
enzyme. - Enzymes are named for their substrates
- Substrate Enzyme
- Lipid Lipase
- Urea Urease
- Maltose Maltase
- Ribonucleic acid Ribonuclease
31- Only one small part of an enzyme, called the
active site, complexes with the substrate(s). - The active site may undergo a slight change in
shape, called induced fit, in order to
accommodate the substrate(s). - The enzyme and substrate form an enzyme-substrate
complex during the reaction. - The enzyme is not changed by the reaction, and it
is free to act again.
32Control of Metabolic Reactions
Enzymes
- control rates of metabolic reactions
- lower activation energy needed to start reactions
- globular proteins with specific shapes
- not consumed in chemical reactions
- shape of active site determines substrate
4-7
33Control of Metabolic Reactions
- Metabolic pathways
- series of enzyme-controlled reactions leading to
formation of a product - each new substrate is the product of the
previous reaction
- Enzyme names commonly
- reflect the substrate
- have the suffix ase
- sucrase, lactase, protease, lipase
4-8
34Control of Metabolic Reactions
- Coenzymes
- organic molecules that act as cofactors
- vitamins
- Cofactors
- make some enzymes active
- ions or coenzymes
- Factors that alter enzymes
- heat
- radiation
- electricity
- chemicals
- changes in pH
4-9
35Energy for Metabolic Reactions
- Energy
- ability to do work or change something
- heat, light, sound, electricity, mechanical
energy, chemical energy - changed from one form to another
- involved in all metabolic reactions
- Release of chemical energy
- most metabolic processes depend on chemical
energy - oxidation of glucose generates chemical energy
- cellular respiration releases chemical energy
from molecules and makes it available for
cellular use
4-10
36Enzymatic reaction
37Induced fit model
38Factors Affecting Enzymatic Speed
- Enzymatic reactions proceed with great speed
provided there is enough substrate to fill active
sites most of the time. - Enzyme activity increases as substrate
concentration increases because there are more
collisions between substrate molecules and the
enzyme.
39Temperature and pH
- As the temperature rises, enzyme activity
increases because more collisions occur between
enzyme and substrate. - If the temperature is too high, enzyme activity
levels out and then declines rapidly because the
enzyme is denatured. - Each enzyme has an optimal pH at which the rate
of reaction is highest.
40Rate of an enzymatic reaction as a function of
temperature and pH
Fig 4.4
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42- A cell regulates which enzymes are present or
active at any one time. - Genes must be turned on or off to regulate the
quantity of enzyme present. - Another way to control enzyme activity is to
activate or deactivate the enzyme. - Phosphorylation is one way to activate an enzyme.
43Enzyme Inhibition
- Enzyme inhibition occurs when an active enzyme is
prevented from combining with its substrate. - When the product of a metabolic pathway is in
abundance, it binds competitively with the
enzymes active site, a simple form of feedback
inhibition. - Other metabolic pathways are regulated by the end
product binding to an allosteric site on the
enzyme.
44Feedback inhibition
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47Enzyme Cofactors
- Presence of enzyme cofactors may be necessary for
some enzymes to carry out their functions. - Inorganic metal ions, such as copper, zinc, or
iron function as cofactors for certain enzymes. - Organic molecules, termed coenzymes, must be
present for other enzymes to function. - Some coenzymes are vitamins.
48Cofactors Coenzymes
- Cofactor binding changes conformation of active
site - aids in temporary bonding between enzyme
substrates
Fig 4.5
4-14
49Enzyme Activation
- Many enzymes are produced in an inactive form
- E.g. pancreatic digestive enzymes are not
activated until they reach the intestine - Protects pancreas against self-digestion
- Many are activated by phosphorylation
inactivated by dephosphorylation - Others activated by ligands (small molecules)
called 2nd messengers
4-15
50Effect of Substrate Concentration
- Rate of product formation increases as substrate
concentration increases - Until reaction rate reaches a plateau
- Where enzyme is said to be saturated
Fig 4.6
4-16
51Reversible Reactions
- Some enzymatic reactions are reversible
- Both forward backward reactions are catalyzed
by same enzyme - Law of mass action direction of reaction is from
side of equation where concentration is higher to
side where concentration is lower - E.g. carbonic anhydrase catalyzes
- H20 C02 ? H2C03
4-17
52Metabolic Pathways
- Are sequences of enzymatic reactions that begin
with initial substrate, progress through
intermediates, end with a final product
Fig 4.7
4-19
53End-Product Inhibition
- Occurs when 1 product in a divergent pathway
inhibits activity of the branch-point enzyme - Prevents final product accumulation
- Causes reaction to favor alternate pathway
- Occurs by allosteric inhibition whereby product
binds to enzyme causing it to change to an
inactive shape
Fig 4.9
4-20
54Inborn Errors of Metabolism
- Are due to inherited defects in genes for enzymes
in metabolic pathways - Metabolic disease can result from either
- Increases in intermediates formed prior to the
defective enzyme - Or decreases in products normally formed after
the defective enzyme
Fig 4.10
4-21
554-22
56Oxidation-Reduction and the Flow of Energy
- Oxidation is the loss of electrons and reduction
is the gain of electrons. - Because oxidation and reduction occur
simultaneously in a reaction, such a reaction is
called a redox reaction. - Oxidation also refers to the loss of hydrogen
atoms, and reduction refers to the gain of
hydrogen atoms in covalent reactions in cells.
57- These types of oxidation-reduction, or redox,
reactions are exemplified by the overall
reactions of photosynthesis and cellular
respiration. - The two pathways of photosynthesis and cellular
respiration permit the flow of energy from the
sun though all living things.
58Cellular Respiration
- The overall equation for cellular respiration is
opposite that of photosynthesis - C6H12O6 6O2 ? 6CO2 6H2O Energy
- In this reaction, glucose is oxidized and oxygen
is reduced to become water. - The complete oxidation of a mol of glucose
releases 686 kcal of energy that is used to
synthesize ATP.
59Overview of Cellular Respiration
- Cellular respiration is the step-wise release of
energy from carbohydrates and other molecules
energy from these reactions is used to synthesize
ATP molecules. - This is an aerobic process that requires oxygen
(O2) and gives off carbon dioxide (CO2), and
involves the complete breakdown of glucose to
carbon dioxide and water.
60- The oxidation of glucose is an exergonic reaction
(releases energy) which drives ATP synthesis,
which is an endergonic reaction (energy is
required). - The overall equation for cellular respiration
shows the coupling of glucose breakdown to ATP
buildup. - The breakdown of one glucose molecule results in
a maximum of 36 to 38 ATP molecules, representing
about 40 of the potential energy within the
glucose molecule.
61Cellular respiration
62Phases of Complete Glucose Breakdown
- The oxidation of glucose by removal of hydrogen
atoms involves four phases - Glycolysis the breakdown of glucose to two
molecules of pyruvate in the cytoplasm with no
oxygen needed yields 2 ATP - Transition reaction pyruvate is oxidized to a
2-carbon acetyl group carried by CoA, and CO2 is
removed occurs twice per glucose molecule
63- Citric acid cycle a cyclical series of
oxidation reactions that give off CO2 and produce
one ATP per cycle occurs twice per glucose
molecule - Electron transport system a series of carriers
that accept electrons removed from glucose and
pass them from one carrier to the next until the
final receptor, O2 is reached water is produced
energy is released and used to synthesize 32 to
34 ATP - If oxygen is not available, fermentation occurs
in the cytoplasm instead of proceeding to
cellular respiration.
64Outside the Mitochondria Glycolysis
- Glycolysis occurs in the cytoplasm and is the
breakdown of glucose to two pyruvate molecules. - Glycolysis is universally found in all organisms
and likely evolved before the citric acid cycle
and electron transport system. - Glycolysis does not require oxygen.
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66Energy-Investment Steps
- As glycolysis begins, two ATP are used to
activate glucose, a 6-carbon molecule that splits
into two C3 molecules known as PGAL. - PGAL carries a phosphate group from ATP.
- From this point on, each C3 molecule undergoes
the same series of reactions.
67Glycolysis
68Energy-Harvesting Steps
- Oxidation of PGAL now occurs by the removal of
electrons that are accompanied by hydrogen ions,
both picked up by the coenzyme NAD - 2 NAD 4H ? 2 NADH 2 H
- The oxidation of PGAL and subsequent substrates
results in four high-energy phosphate groups used
to synthesize ATP in substrate-level
phosphorylation.
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71Glycolysis summary
- Inputs
- Glucose
- 2 NAD
- 2 ATP
- 4 ADP 2 P
- Outputs
- 2 pyruvate
- 2 NADH
- 2 ADP
- 2 ATP (net gain)
72Lactic Acid Pathway
- Used to make the re-formation of NAD for
Glycolysis possible when oxygen is not available
to accept hydrogen ions. - Hydrogen ions are passed over to pyruvic acid.
- When 2 H ions bind to pyruvic acid lactic acid
results. - This pathway is referred to as Anaerobic
respiration.
73Inside the Mitochondria
- A mitochondrion is a cellular organelle that has
a double membrane, with an intermembrane space
between the two layers. - Cristae are folds of inner membrane that jut out
into the matrix, the innermost compartment, which
is filled with a gel-like fluid. - The transition reaction and citic acid cycle
occur in the matrix the electron transport
system is located in the cristae.
74Transition Reaction
- The transition reaction connects glycolysis to
the citric acid cycle, and is thus the transition
between these two pathways. - Pyruvate is converted to a C2 acetyl group
attached to coenzyme A (CoA), and CO2 is
released. - During this oxidation reaction, NAD is converted
to NADH H the transition reaction occurs
twice per glucose molecule.
75Aerobic Respiration
- Begins when pyruvate formed by glycolysis enters
mitochondria - C02 is clipped off pyruvate forming acetyl CoA
(coenzyme A is a carrier for acetic acid) - C02 goes to lungs
- Energy in acetyl CoA is extracted during aerobic
respiration in mitochondria
Fig 5.6
5-14
76Citric Acid Cycle (Krebs Cycle)
- The citric acid cycle is a cyclical metabolic
pathway located in the matrix of the
mitochondria. - At the start of the citric acid cycle, CoA
carries the C2 acetyl group to join a C4
molecule, and C6 citrate results. - Each acetyl group received from the transition
reaction is oxidized to 2 CO2 molecules.
77- During the cycle, oxidation occurs when NAD
accepts electrons in three sites and FAD accepts
electrons once. - Substrate-level phosphorylation results in a gain
of one ATP per every turn of the cycle it turns
twice per glucose. - During the citric acid cycle, the six carbon
atoms in glucose become CO2. - The transition reaction produces two CO2, and the
citric acid cycle produces four CO2 per molecule
of glucose.
78Krebs Cycle
Fig 5.7
- Begins with acetyl CoA combining with oxaloacetic
acid to form citric acid - In a series of reactions citric acid converted
back to oxaloacetic acid to complete the pathway
5-15
79Citric acid cycle
80Citric acid cycle inputs and outputs per glucose
molecule
- Inputs
- 2 acetyl groups
- 6 NAD
- 2 FAD
- 2 ADP 2 P
- Outputs
- 4 CO2
- 6 NADH
- 2 FADH2
- 2 ATP
81Electron Transport System
- The electron transport system located in the
cristae of mitochondria is a series of protein
carriers, some of which are cytochromes, that
pass electrons from one to the other. - Electrons carried by NADH and FADH2 enter the
electron transport system. - As a pair of electrons is passed from carrier to
carrier, energy is released and is used to form
ATP molecules by oxidative phosphorylation.
82Electron Transport Oxidative Phosphorylation
- The electron transport chain is a linked series
of proteins on the cristae of mitochondria - Proteins are FMN, coenzyme Q, cytochromes
Fig 3.10
5-18
83- Oxygen receives energy-spent electrons at the end
of the electron transport system. - Next, oxygen combines with hydrogen, and water
forms - ½ O2 2 e- 2 H ? H2O
- When NADH carries electrons to the first carrier,
enough energy is released by the time electrons
are accepted by O2 to produce three ATP two ATP
are produced when FADH2 delivers electrons to the
carriers.
84Overview of the electron transport system
- As each protein in ETC accepts electrons it is
reduced - When it gives electrons to next protein it is
oxidized - This process is exergonic
- Energy is used to phosphorylate ADP to make ATP
- Called oxidative phosphorylation
85Organization of Cristae
- The electron transport system is located in the
cristae of the mitochondria and consists of three
protein complexes and two mobile carriers. - The mobile carriers transport electrons between
the complexes, which also contain electron
carriers. - The carriers use the energy released by electrons
as they move down the carriers to pump H from
the matrix into the intermembrane space of the
mitochondrion.
86- A very strong electrochemical gradient is
established with few H in the matrix and many in
the intermembrane space. - The cristae also contain an ATP synthase complex
through which hydrogen ions flow down their
gradient from the intermembrane space into the
matrix. - The flow of three H through an ATP synthase
complex causes a conformational change, which
causes the ATP synthase to synthesize ATP from
ADP P.
87- Mitochondria produce ATP by chemiosmosis, so
called because ATP production is tied to an
electrochemical gradient, namely an H gradient. - Once formed, ATP molecules are transported out of
the mitochondrial matrix.
88Chemiosmotic theory
Fig 5.10
- Energy gathered by ETC is used to pump Hs into
mitochondria outer chamber - Creating high H concentration there
- As Hs diffuse down concentration charge
gradient thru ATP synthase, back into inner
chamber, their energy drives ATP synthesis
(Chemiosmotic theory)
5-21
89Function of Oxygen
Fig 5.10
- Electrons added to beginning of ETC are passed
along until reach end - Have to be given away or would stop ETC
- O2 accepts these electrons combines with 4Hs
- O2 4 e- 4 H ? 2 H20
5-22
90ATP Formation
- ATP can be made 2 ways
- Direct (substrate-level) phosphorylation
- Where ATP is generated when bonds break
- Both ATPs in glycolysis made this way
- 2 ATPs/glucose in Kreb's made this way
- Oxidative phosphorylation in Kreb's
- Where ATP generated by ETC
- 30-32 ATPs made this way
5-23
91ATP Formation continued
- 3Hs pass thru ATP synthase to generate 1 ATP
- This yields 36-38 ATPs/glucose
- However some of these are used to pump ATPs out
of mitochondria - So net yield is 30-32 ATPs/glucose
- Really takes 4Hs to generate 1 exported ATP
5-24
92Production of ATP by ETC
- 2.5 ATP produced for each pair of electrons NADH
donates - 1.5 ATP produced for each pair of electrons FADH2
donates - Net of 26 ATP produced in ETC
5-25
93Net Production of ATP
- 26 ATP produced in ETC
- 2 from glycolysis
- 2 from direct phosphorylation in Krebs
- For total of 30 ATPs for each glucose
5-26
94Energy Yield from Glucose Metabolism
- Per glucose molecule, there is a net gain of two
ATP from glycolysis, which occurs in the
cytoplasm by substrate-level phosphorylation. - The citric acid cycle, occurring in the matrix of
mitochondria, adds two more ATP, also by
substrate-level phosphorylation.
95- Most ATP is produced by the electron transport
system and chemiosmosis. - Per glucose molecule, ten NADH and two FADH2 take
electrons to the electron transport system three
ATP are formed per NADH and two ATP per FADH2. - Electrons carried by NADH produced during
glycolysis are shuttled to the electron transport
chain by an organic molecule.
96Accounting of energy yield per glucose molecule
breakdown
97Summary of Cellular Respiration
4-20
985-27
99Glycogenesis and Glycogenolysis
- Glycogenesis is the formation of glycogen from
glucose. - Glycogenolysis is the conversion of glycogen to
glucose 6-phosphate.
100Cori Cycle
- A dual reaction between skeletal muscles and the
liver. - Lactic acid produced by skeletal muscle is
converted to glucose by gluconeogenesis in the
liver. - This glucose is then either used to produce ATP
or is used by skeletal muscle cells to restore
depleted levels of glycogen.
101Fat Protein Metabolism
5-28
102Fats Proteins as Energy Sources
- Fats can be hydrolyzed to glycerol fatty acids
- These can be modified to run thru Kreb's
- Proteins can be broken down to amino acids
- Which can be deaminated run thru Kreb's
- These pathways can be used to interconvert
carbohydrates, fats, proteins
5-29
103Energy Storage
- When more energy is taken in than consumed, ATP
synthesis is inhibited - Glucose converted into glycogen fat
Fig 5.11
5-30
104Acetyl CoA
- Is a common substrate for energy synthetic
pathways
Fig 5.12
5-31
105Fat Synthesis (Lipogenesis)
- Acetyl CoAs can be linked together to form fatty
acids - Fatty acids glycerol Fat (triglycerides)
- Occurs mainly in adipose liver tissues
- Fat is major form of energy storage in body
- Yields 9 kilocalories/g
- Carbs proteins yield only 4/g
5-32
106Lipolysis
- Is breakdown of fat into fatty acids glycerol
- Via hydrolysis by lipase
- Acetyl CoAs from free fatty acids serve as major
energy source for many tissues
5-33
107Acetyl CoA from Fat --Beta-Oxidation
- Beta-oxidation clips acetyl CoAs off fatty acid
chains - Which can be run thru Kreb's giving 10ATPs each
- Plus ?-oxidation itself yields 4 ATPs
Fig 5.13
5-34
108Brown Fat
- Amount of brown fat greatest at time of birth
- Major site for thermogenesis in the newborn
- Brown fat produces uncoupling protein, causing H
to leak out of inner mitochondrial membrane - Less ATP produced, causes electron transport
system to be more active - Heat produced instead of ATP
5-35
109Ketone Bodies
- Triglycerides are continually broken down
resynthesized - Ensures blood will contain fatty acids for
aerobic respiration - During fasting diabetes lots of fat is broken
down - Causes high levels of ketone bodies
- Fat metabolites
- Gives breath an acetone smell
5-36
110Amino Acid Metabolism
- Nitrogen (N) ingested primarily as protein
- Which is used in body as amino acids
- Excess is excreted mainly as urea
5-37
111Nitrogen (N) Balance
- Nitrogen balance N ingested minus N excreted
- Positive N balance more N ingested than excreted
- Negative N balance less N ingested than excreted
- In healthy adults amount of N excreted amount
ingested - Excess amino acids can be converted into carbos
fat
5-38
112Essential Non-essential Amino Acids
- 20 amino acids used to build proteins
- 12 can be produced by body
- 8 must come from diet
- ( essential amino acids)
5-39
113Transamination
- New amino acids can be obtained by transamination
- Which is addition of -NH2 to pyruvate or Kreb's
cycle ketones to make a new amino acid - Catalyzed by transaminase
5-40
114Transamination continued
Fig 5.14
5-41
115Oxidative Deamination
- Is process by which excess amino acids are
eliminated - -NH2 is removed from glutamic acid, forming keto
acid ammonia - Ammonia is converted to urea excreted
- Keto acid goes to Krebs or to fat or glucose
Fig 5.15
5-42
116Uses of Different Energy Sources
- Different cells have different preferred energy
substrates - Brain uses glucose as its major source of energy
5-44
117Summary of Catabolism of Proteins, Carbohydrates,
and Fats
4-21
118Carbohydrate Storage
- Excess glucose stored as
- glycogen (primarily by liver and muscle cells)
- fat
- converted to amino acids
4-22