147 Syntenic PPTs View free & download

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. PowerPoint PPT Presentation

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. - Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. 70 Kbp surrounding putative soybean orthologous genes to ...

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. 70 Kbp surrounding putative soybean orthologous genes to ...

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Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. PowerPoint PPT Presentation

Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. - Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. 70 Kbp surrounding putative soybean orthologous ...

Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. 70 Kbp surrounding putative soybean orthologous ...

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Syntenic Analysis of the Dog Genome PowerPoint PPT Presentation

Syntenic Analysis of the Dog Genome - ... of the Dog Genome ... Synteny between dog chromosomes and the chicken, human, mouse, and ... defined for 100Kb syntenic windows: (size other/size dog) ...

... of the Dog Genome ... Synteny between dog chromosomes and the chicken, human, mouse, and ... defined for 100Kb syntenic windows: (size other/size dog) ...

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Comparative Analysis of Human Chromosome 22q11.1-q12.3 with Syntenic Regions in the Chimpanzee, Baboon, Bovine, Mouse, Pufferfish and Zebrafish Genomes - Comparative Analysis of Human Chromosome 22q11.1-q12.3 with Syntenic Regions in the Chimpanzee, Baboon, Bovine, Mouse, Pufferfish and Zebrafish Genomes

Comparative Analysis of Human Chromosome 22q11.1-q12.3 with Syntenic Regions in the Chimpanzee, Baboon, Bovine, Mouse, Pufferfish and Zebrafish Genomes

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Preliminary synteny mapping for dog genome PowerPoint PPT Presentation

Preliminary synteny mapping for dog genome - Clustering of well-behaved runs of alignments. Pairwise syntenic maps--key parameters: ... Regional variation? Correlation to regional variation in primates/ rodents ...

Clustering of well-behaved runs of alignments. Pairwise syntenic maps--key parameters: ... Regional variation? Correlation to regional variation in primates/ rodents ...

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Ongoing Synteny Analysis of the Monodelphis Genome PowerPoint PPT Presentation

Ongoing Synteny Analysis of the Monodelphis Genome - minimum number of anchors. Does not rely on feature annotations (genes) Alignment Clusters ... Syntenic anchors on HSA20. Human (300Kb) Monodelphis (320Kb) truncated ...

minimum number of anchors. Does not rely on feature annotations (genes) Alignment Clusters ... Syntenic anchors on HSA20. Human (300Kb) Monodelphis (320Kb) truncated ...

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The biology of Leishmania beyond the Genome Project PowerPoint PPT Presentation

The biology of Leishmania beyond the Genome Project - Molecular karyotype: definition of syntenic groups ... a molecular karyotype for. L.major -Friedlin. LGN laboratories. Leishmania Genome Project: LGN ...

Molecular karyotype: definition of syntenic groups ... a molecular karyotype for. L.major -Friedlin. LGN laboratories. Leishmania Genome Project: LGN ...

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Comparative Genome Maps PowerPoint PPT Presentation

Comparative Genome Maps - Chromosome. Gene family 'key to understanding the human genome' ... Synteny: loci on the same chromosome. Colinearity: syntenic regions with conserved gene order ...

Chromosome. Gene family 'key to understanding the human genome' ... Synteny: loci on the same chromosome. Colinearity: syntenic regions with conserved gene order ...

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Material%20from%20Thursday%20September%2019th%20handout%20covered%20on%20Tuesday%20September%2024th PowerPoint PPT Presentation

Material%20from%20Thursday%20September%2019th%20handout%20covered%20on%20Tuesday%20September%2024th - Material from Thursday September 19th handout covered on Tuesday September 24th

Material from Thursday September 19th handout covered on Tuesday September 24th

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Comparing the Mouse and Human Genomes: A First Look PowerPoint PPT Presentation

Comparing the Mouse and Human Genomes: A First Look - Mouse and Human Genomes: A First Look. Michael Kamal ... Mouse Genome: Arachne Assembly. Emphasize dramatic increase in supercontig size ...

Mouse and Human Genomes: A First Look. Michael Kamal ... Mouse Genome: Arachne Assembly. Emphasize dramatic increase in supercontig size ...

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Smith-Magenis Syndrome PowerPoint PPT Presentation

Smith-Magenis Syndrome - Smith-Magenis Syndrome Presented by: Sara Mickelson What is SMS? Syndrome was first described in 1982 by Ann Smith(genetic counselor) and Dr. Ruth Magenis Occurs in 1 ...

Smith-Magenis Syndrome Presented by: Sara Mickelson What is SMS? Syndrome was first described in 1982 by Ann Smith(genetic counselor) and Dr. Ruth Magenis Occurs in 1 ...

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Multiple-Alignment PowerPoint PPT Presentation

Multiple-Alignment - ... Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA ... Visualizing Interpreting the results The multiple ... data sets that can ...

... Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA ... Visualizing Interpreting the results The multiple ... data sets that can ...

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Gene Finding with HMMs PowerPoint PPT Presentation

Gene Finding with HMMs - SLAMming the. Human and mouse. genomes. Marina Alexandersson. Simon Cawley. Lior Pachter ... http://pipeline.lbl.gov/ http://bio.math.berkeley.edu/slam/mouse ...

SLAMming the. Human and mouse. genomes. Marina Alexandersson. Simon Cawley. Lior Pachter ... http://pipeline.lbl.gov/ http://bio.math.berkeley.edu/slam/mouse ...

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Diapositive 1 PowerPoint PPT Presentation

Diapositive 1 - Due to some uncertainties suspected in the 1.01 assembly in this region of Gm chr 5 ... we have represented an intergenic region of 1.7 kb between genes 10 and 11 ...

Due to some uncertainties suspected in the 1.01 assembly in this region of Gm chr 5 ... we have represented an intergenic region of 1.7 kb between genes 10 and 11 ...

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Gene Level Expression Profiling Using Affymetrix Exon Arrays PowerPoint PPT Presentation

Gene Level Expression Profiling Using Affymetrix Exon Arrays - Title: Slide 1 Author: Affymetrix, Inc. Last modified by: Alan Williams Created Date: 9/27/2004 12:57:55 AM Document presentation format: On-screen Show

Title: Slide 1 Author: Affymetrix, Inc. Last modified by: Alan Williams Created Date: 9/27/2004 12:57:55 AM Document presentation format: On-screen Show

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Rat Genome Database an introduction Simon N. Twigger, Ph.D. Bioinformatics Research Center Medical College of Wisconsin, Milwaukee PowerPoint PPT Presentation

Rat Genome Database an introduction Simon N. Twigger, Ph.D. Bioinformatics Research Center Medical College of Wisconsin, Milwaukee - Title: Title Author: WJin Last modified by: AKwitek Created Date: 2/27/2002 6:26:03 PM Document presentation format: On-screen Show Company: Informatics Research Center

Title: Title Author: WJin Last modified by: AKwitek Created Date: 2/27/2002 6:26:03 PM Document presentation format: On-screen Show Company: Informatics Research Center

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Comparing the Mouse and Human Genomes: A First Look - Nicole Stange-Thomann. Toby Bloom. Jill Mesirov. Bruce Birren. Chad ... Webb Miller, PSU. Ross Hardison, PSU. Michael Brent, WU. British Columbia. Marco Marra ...

Nicole Stange-Thomann. Toby Bloom. Jill Mesirov. Bruce Birren. Chad ... Webb Miller, PSU. Ross Hardison, PSU. Michael Brent, WU. British Columbia. Marco Marra ...

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Synteny - Synteny does comparisons of two large sequences and shows ... http://www.sanger.ac.uk/HGP/Chr22/Mouse/Maps/hm_genes.shtml. Human chr. 22: 17810894 -18090842 ...

Synteny does comparisons of two large sequences and shows ... http://www.sanger.ac.uk/HGP/Chr22/Mouse/Maps/hm_genes.shtml. Human chr. 22: 17810894 -18090842 ...

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Major Histocompatibility Complex, aka MHC PowerPoint PPT Presentation

Major Histocompatibility Complex, aka MHC - Major Histocompatibility Complex, aka MHC 'A complex of genes encoding cell ... basis of self / not self distinction. presentation of processed antigen ...

Major Histocompatibility Complex, aka MHC 'A complex of genes encoding cell ... basis of self / not self distinction. presentation of processed antigen ...

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CS273A Computational Tour of the Human Genome, Gill Bejerano, Spring 2006/07 PowerPoint PPT Presentation

CS273A Computational Tour of the Human Genome, Gill Bejerano, Spring 2006/07 - Profs: Serafim Batzoglou, Gill Bejerano TAs: George Asimenos, Cory McLean http://cs273a.stanford.edu [Bejerano Spr06/07]*

Profs: Serafim Batzoglou, Gill Bejerano TAs: George Asimenos, Cory McLean http://cs273a.stanford.edu [Bejerano Spr06/07]*

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Alignment of Whole Genomes: Algorithms PowerPoint PPT Presentation

Alignment of Whole Genomes: Algorithms - nearly 200 complete genomes have been sequenced ... Penalties are affine (event and distance. components) Penalties: regular. translocation ...

nearly 200 complete genomes have been sequenced ... Penalties are affine (event and distance. components) Penalties: regular. translocation ...

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fish - fish. frog. chick. Walking the line of cytochrome P450 evolution. David R. Nelson. human ... zebrafish CYP2P, CYP2V, CYP2AD and CYP2N gene cluster. chicken ...

fish. frog. chick. Walking the line of cytochrome P450 evolution. David R. Nelson. human ... zebrafish CYP2P, CYP2V, CYP2AD and CYP2N gene cluster. chicken ...

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Comparative genomics and proteomics in Ensembl PowerPoint PPT Presentation

Comparative genomics and proteomics in Ensembl - Comparative genomics and proteomics in Ensembl. November 2004 ... The Compara database is one single multispecies database. Gene orthology/paralogy prediction ...

Comparative genomics and proteomics in Ensembl. November 2004 ... The Compara database is one single multispecies database. Gene orthology/paralogy prediction ...

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Introduction to Genomics PowerPoint PPT Presentation

Introduction to Genomics - What incentives and what problems can you foresee in a genome project for your ... Synteny. Crop circles. Gale & Devos. Cat vs human synteny ...

What incentives and what problems can you foresee in a genome project for your ... Synteny. Crop circles. Gale & Devos. Cat vs human synteny ...

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Polyploidy - B. oleracea (cabbage, cauliflower, Brocolli, kale, etc.) 2n = 18 ... The creation of triploids can be accomplished by crossing a tetraploid with a diploid, ...

B. oleracea (cabbage, cauliflower, Brocolli, kale, etc.) 2n = 18 ... The creation of triploids can be accomplished by crossing a tetraploid with a diploid, ...

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Human Linkage Studies of Psychiatric Illness PowerPoint PPT Presentation

Human Linkage Studies of Psychiatric Illness - Human Linkage Studies of Psychiatric Illness. Extreme Discordant ... Address Labels. Dr Jonathan Flint. University of Oxford. PO BOX 321. Rotherham. Yorkshire ...

Human Linkage Studies of Psychiatric Illness. Extreme Discordant ... Address Labels. Dr Jonathan Flint. University of Oxford. PO BOX 321. Rotherham. Yorkshire ...

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Investigating Genomes with Ensembl - Investigating Genomes with Ensembl

Investigating Genomes with Ensembl

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The Aim - To allow exploration of mapping information. To discover or ... Specifying which properties are allowed, which must always be true, and which are disallowed ...

To allow exploration of mapping information. To discover or ... Specifying which properties are allowed, which must always be true, and which are disallowed ...

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Introduction to Genomics - Knowledge of the whole genome of an organism ... Crop circles. Gale & Devos. UoN Graduate School Course on Post-genomics and bio-informatics ...

Knowledge of the whole genome of an organism ... Crop circles. Gale & Devos. UoN Graduate School Course on Post-genomics and bio-informatics ...

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Co-segregation and linkage analysis in humans PowerPoint PPT Presentation

Co-segregation and linkage analysis in humans - if close together, the frequency (%) of recombination will be low and they will ... if far apart, a crossover will occur in every (or nearly every) meiosis and they ...

if close together, the frequency (%) of recombination will be low and they will ... if far apart, a crossover will occur in every (or nearly every) meiosis and they ...

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Assembling and Annotating the Draft Human Genome - Assembling and Annotating the Draft Human Genome

Assembling and Annotating the Draft Human Genome

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What are orthologs PowerPoint PPT Presentation

What are orthologs - How should MODs represent orthology, similarity, paralogy? ... groups to periodically compute orthology relationships according to their own ...

How should MODs represent orthology, similarity, paralogy? ... groups to periodically compute orthology relationships according to their own ...

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Alignment of whole genomes using suffix trees PowerPoint PPT Presentation

Alignment of whole genomes using suffix trees - Alignment of whole genomes using suffix trees Mahshid Shakiba Nov 17, 2004 IFT 6299, University of Montreal Outline Motivation MUMmer Algorithms Observations MUMmer 2 ...

Alignment of whole genomes using suffix trees Mahshid Shakiba Nov 17, 2004 IFT 6299, University of Montreal Outline Motivation MUMmer Algorithms Observations MUMmer 2 ...

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Tutorial for the Genome Browser for Soybean: by David A. Lightfoot Center for Excellence in Soybean Research, Teaching and Outreach Genomics PowerPoint PPT Presentation

Tutorial for the Genome Browser for Soybean: by David A. Lightfoot Center for Excellence in Soybean Research, Teaching and Outreach Genomics - Tutorial for the Genome Browser for Soybean: by David A. Lightfoot. Center for Excellence in ... Ideotype of MLG G Chromosome 18. 6.66 microns euchromatin ...

Tutorial for the Genome Browser for Soybean: by David A. Lightfoot. Center for Excellence in ... Ideotype of MLG G Chromosome 18. 6.66 microns euchromatin ...

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Comparative%20Genomics%20Comparative%20Gene%20Prediction%20in%20the%20Human%20Genome PowerPoint PPT Presentation

Comparative%20Genomics%20Comparative%20Gene%20Prediction%20in%20the%20Human%20Genome - Comparative genomics is the analysis and comparison of genomes from different species. ... Rosetta. Gene prediction is separated from sequence alignment. ...

Comparative genomics is the analysis and comparison of genomes from different species. ... Rosetta. Gene prediction is separated from sequence alignment. ...

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1 of 23 - 1 of 23

1 of 23

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Preliminary synteny mapping for dog genome - contiguous in dog and human. nearly coincident breaks in chicken, mouse and rat ... Dog reveals ancient duplication. A 4 Mb region on dog chr21 shows strong ...

contiguous in dog and human. nearly coincident breaks in chicken, mouse and rat ... Dog reveals ancient duplication. A 4 Mb region on dog chr21 shows strong ...

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Howard slide PowerPoint PPT Presentation

Howard slide - Cd36 as a susceptibility factor for insuline resistance in the SHR rat. Cblb (ubiquitin-protein ligase) as susceptibility factor for Type I Diabetes. Atherosclerosis: ...

Cd36 as a susceptibility factor for insuline resistance in the SHR rat. Cblb (ubiquitin-protein ligase) as susceptibility factor for Type I Diabetes. Atherosclerosis: ...

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Gene predictions for eukaryotes - Gene predictions for eukaryotes ...

Gene predictions for eukaryotes ...

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Rice paper cont. PowerPoint PPT Presentation

Rice paper cont. - Rice paper cont. TPA = Tissue plasminogen activator, dissolves clots Problem: Cleared quickly from bloodstream by liver Bind to hepatocytes in liver via TPA s ...

Rice paper cont. TPA = Tissue plasminogen activator, dissolves clots Problem: Cleared quickly from bloodstream by liver Bind to hepatocytes in liver via TPA s ...

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Gramene database A hot spot for Comparative grass genomics PowerPoint PPT Presentation

Gramene database A hot spot for Comparative grass genomics - Organelles (plastid and mitochondrion) * Gramene Highlights. Species: Rice (Oryza) Maize (Zea) ... CMap allows genetic, physical and sequence maps to be aligned. ...

Organelles (plastid and mitochondrion) * Gramene Highlights. Species: Rice (Oryza) Maize (Zea) ... CMap allows genetic, physical and sequence maps to be aligned. ...

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Rat Genome Database an introduction Simon N. Twigger, Ph.D. Bioinformatics Research Center Medical C PowerPoint PPT Presentation

Rat Genome Database an introduction Simon N. Twigger, Ph.D. Bioinformatics Research Center Medical C - The Rat is a very good model of Human complex genetic diseases (eg. ... Pied Piper - quarterly newsletter. Rat Strain and Gene nomenclature guides ...

The Rat is a very good model of Human complex genetic diseases (eg. ... Pied Piper - quarterly newsletter. Rat Strain and Gene nomenclature guides ...

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Linking chromosomes to genetics PowerPoint PPT Presentation

Linking chromosomes to genetics - ebony body, vestigal winged male. Drosophila melanogaster Meigen ... ebony color should stay with vestigal wings in all (or at least most) progeny in ...

ebony body, vestigal winged male. Drosophila melanogaster Meigen ... ebony color should stay with vestigal wings in all (or at least most) progeny in ...

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Telomeres: - 5-8 bp G-rich tandem repeats. Repetitive noncoding DNA ... Cumulative mutational load, increaed epigenetic gene silencing and telomere dysfunction ...

5-8 bp G-rich tandem repeats. Repetitive noncoding DNA ... Cumulative mutational load, increaed epigenetic gene silencing and telomere dysfunction ...

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Chromosome Conformation Capture, Looping, and Mechanisms of Bglobin Regulation PowerPoint PPT Presentation

Chromosome Conformation Capture, Looping, and Mechanisms of Bglobin Regulation - Combine computational and experimental approaches, esp. ... Six DNAse hypersensitive regions (HS1-6) a.k.a 'Locus Control Region', or LCR ...

Combine computational and experimental approaches, esp. ... Six DNAse hypersensitive regions (HS1-6) a.k.a 'Locus Control Region', or LCR ...

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Pr - Title: Pr sentation PowerPoint Author: Fredj Tekaia Last modified by: Fredj Tekaia Created Date: 8/29/2006 1:41:44 PM Document presentation format

Title: Pr sentation PowerPoint Author: Fredj Tekaia Last modified by: Fredj Tekaia Created Date: 8/29/2006 1:41:44 PM Document presentation format

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Assembling and Annotating the Draft Human Genome - 300,000 BAC Clones Were Digested and Run on Agarose Gels ... first coding exon, introns, middle coding exons, introns, the 3' UTR and 500 ...

300,000 BAC Clones Were Digested and Run on Agarose Gels ... first coding exon, introns, middle coding exons, introns, the 3' UTR and 500 ...

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Sequencing the Maize Genome PowerPoint PPT Presentation

Sequencing the Maize Genome - Draft sequence of the maize genome. All BACs: shotgun & pre-finishing ... (Hind III, EcoR I, MboI ; 27X genome coverage (~150kb inserts) BAC End. Sequencing ~800,000 ...

Draft sequence of the maize genome. All BACs: shotgun & pre-finishing ... (Hind III, EcoR I, MboI ; 27X genome coverage (~150kb inserts) BAC End. Sequencing ~800,000 ...

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V13 Prediction of Phylogenies based on single genes PowerPoint PPT Presentation

V13 Prediction of Phylogenies based on single genes - V13 Prediction of Phylogenies based on single genes Material of this lecture taken from - chapter 6, DW Mount Bioinformatics and from Julian Felsenstein s book.

V13 Prediction of Phylogenies based on single genes Material of this lecture taken from - chapter 6, DW Mount Bioinformatics and from Julian Felsenstein s book.

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Genome Bioinformatics PowerPoint PPT Presentation

Genome Bioinformatics - Genome Bioinformatics. Tyler Alioto. Center for Genomic Regulation Barcelona, Spain ... Expressed Sequence (cDNA) or protein sequence available? Yes Spliced alignment ...

Genome Bioinformatics. Tyler Alioto. Center for Genomic Regulation Barcelona, Spain ... Expressed Sequence (cDNA) or protein sequence available? Yes Spliced alignment ...

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Comparative Genome Annotation of Drosophila pseudoobscura and Its Implementation in chado PowerPoint PPT Presentation

Comparative Genome Annotation of Drosophila pseudoobscura and Its Implementation in chado - Driven by orthology to Drosophila melanogaster (Dmel) genome (over 13000 ... Orthology Relationship. 9. GMOD Meeting, Spring 2005. Peili Zhang, FlyBase - Harvard ...

Driven by orthology to Drosophila melanogaster (Dmel) genome (over 13000 ... Orthology Relationship. 9. GMOD Meeting, Spring 2005. Peili Zhang, FlyBase - Harvard ...

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Picking Alignments from Steiner Trees PowerPoint PPT Presentation

Picking Alignments from Steiner Trees - subgraph G' G such that for any u,v S the length of ... Find the shortest 1-spanner connecting reds to blues. Generalizes the Manhattan network problem ...

subgraph G' G such that for any u,v S the length of ... Find the shortest 1-spanner connecting reds to blues. Generalizes the Manhattan network problem ...

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Bioinformatic analysis of the betasecretases, BACE1 and BACE2: integrating genome and transcript dat PowerPoint PPT Presentation

Bioinformatic analysis of the betasecretases, BACE1 and BACE2: integrating genome and transcript dat - Bioinformatic analysis of the beta-secretases, BACE1 and BACE2: integrating ... The Genomic Neighbourhood of Zebra fish (Danio) BACE1 & 2. BACE1. T-box. Apo A. BACE2 ...

Bioinformatic analysis of the beta-secretases, BACE1 and BACE2: integrating ... The Genomic Neighbourhood of Zebra fish (Danio) BACE1 & 2. BACE1. T-box. Apo A. BACE2 ...

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Sequence Alignment - Sequence Alignment

Sequence Alignment

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Gene discovery using combined signals from genome sequence and natural selection PowerPoint PPT Presentation

Gene discovery using combined signals from genome sequence and natural selection - Map experimentally determined sequences of spliced transcripts to their genomic source ... WU-BLAST. Aligned Intron Filter. Validation (RT-PCR) ...

Map experimentally determined sequences of spliced transcripts to their genomic source ... WU-BLAST. Aligned Intron Filter. Validation (RT-PCR) ...

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Using mouse genetics to understand human disease PowerPoint PPT Presentation

Using mouse genetics to understand human disease - Using mouse genetics to understand human disease. Mark Daly. Whitehead/Pfizer ... Genetics: the study of the inheritance of ... Can acclimatize to human touch ...

Using mouse genetics to understand human disease. Mark Daly. Whitehead/Pfizer ... Genetics: the study of the inheritance of ... Can acclimatize to human touch ...

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Syntenic PowerPoint PPT Presentations