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SCOP VE PowerPoint PPT Presentation
SCOP VE - SCOP VE. The Product. Small Co-generation Plants (1-6 MWatts) Electricity ... SCOP VE. Implementation Strategy. Create partnerships with existing local entities ...
SCOP VE. The Product. Small Co-generation Plants (1-6 MWatts) Electricity ... SCOP VE. Implementation Strategy. Create partnerships with existing local entities ...
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SCOP DATABASE PowerPoint PPT Presentation
SCOP DATABASE - SCOP DATABASE. SCOP STATISTICS. Classification. Proteins are classified to reflect both structural ... SCOP STATISTICS. Class of number of Number of Number of ...
SCOP DATABASE. SCOP STATISTICS. Classification. Proteins are classified to reflect both structural ... SCOP STATISTICS. Class of number of Number of Number of ...
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SCOP Sample ppHierarchy PowerPoint PPT Presentation
SCOP Sample ppHierarchy - scop. Root. Class. Fold. Superfamily. Family. Protein. Species. PDB/Ref. SCOP Sample ppHierarchy. Determined by structure. Related by homology ...
scop. Root. Class. Fold. Superfamily. Family. Protein. Species. PDB/Ref. SCOP Sample ppHierarchy. Determined by structure. Related by homology ...
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Link Scoped IPv6 Multicast Addresses PowerPoint PPT Presentation
Link Scoped IPv6 Multicast Addresses - 1. Link Scoped IPv6 Multicast Addresses. Jung-Soo Park, Myung-Ki ... scop. 4-bit. Interface ID. 32-bit. reserved. 16-bit. 4. Multicast Scope. Our draft scope ...
1. Link Scoped IPv6 Multicast Addresses. Jung-Soo Park, Myung-Ki ... scop. 4-bit. Interface ID. 32-bit. reserved. 16-bit. 4. Multicast Scope. Our draft scope ...
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Testing statistical significance scores of sequence comparison methods with structure similarity PowerPoint PPT Presentation
Testing statistical significance scores of sequence comparison methods with structure similarity - Algorithms: BLAST, FASTA, Smith-Waterman. Statistical scores: E-value (standard), Z-value ... Smith-Waterman sequence comparison with Z-value statistics: ...
Algorithms: BLAST, FASTA, Smith-Waterman. Statistical scores: E-value (standard), Z-value ... Smith-Waterman sequence comparison with Z-value statistics: ...
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Testing statistical significance scores of sequence comparison methods with structure similarity PowerPoint PPT Presentation
Testing statistical significance scores of sequence comparison methods with structure similarity - True positives: in same SCOP family, or false positives: not in same family ... E.P.Q. = selectivity indicator (how much false positives? ...
True positives: in same SCOP family, or false positives: not in same family ... E.P.Q. = selectivity indicator (how much false positives? ...
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Protein threading PowerPoint PPT Presentation
Protein threading - The SCOP Database. Structural Classification Of Proteins ... and connectivity, based on SSAP = fold of SCOP) Homology (sequence similarity = superfamily of SCOP) ...
The SCOP Database. Structural Classification Of Proteins ... and connectivity, based on SSAP = fold of SCOP) Homology (sequence similarity = superfamily of SCOP) ...
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Protein Structure Similarity PowerPoint PPT Presentation
Protein Structure Similarity - ... SCOP: http://scop.berkeley.edu/ CATH http://www.biochem.ucl.ac.uk/bsm/cath/ Protein alignment: DALI: http://www.ebi.ac.uk/dali/ LOCK: ...
... SCOP: http://scop.berkeley.edu/ CATH http://www.biochem.ucl.ac.uk/bsm/cath/ Protein alignment: DALI: http://www.ebi.ac.uk/dali/ LOCK: ...
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Bioinformatics of Protein Structure PowerPoint PPT Presentation
Bioinformatics of Protein Structure - CATH and SCOP are two databases that 'organize' protein structures, each ... SCOP database. Classification scheme: Class, Fold, ... HMM's are useful at SCOP ...
CATH and SCOP are two databases that 'organize' protein structures, each ... SCOP database. Classification scheme: Class, Fold, ... HMM's are useful at SCOP ...
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Protein Structure Basics PowerPoint PPT Presentation
Protein Structure Basics - Architecture intermediate between SCOP fold and class: overall packaging and ... SCOP fold. Homologous superfamily and homologous family equivalent to SCOP ...
Architecture intermediate between SCOP fold and class: overall packaging and ... SCOP fold. Homologous superfamily and homologous family equivalent to SCOP ...
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Protein and Proteome Annotation PowerPoint PPT Presentation
Protein and Proteome Annotation - Objective - identify and describe all the physico-chemical, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ Lecture 2.5. 20. Expression Databases. Swiss 2D Page ...
Objective - identify and describe all the physico-chemical, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ Lecture 2.5. 20. Expression Databases. Swiss 2D Page ...
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Structural alphabets, from protein structure description PowerPoint PPT Presentation
Structural alphabets, from protein structure description - SCOP 95. database. Top Hits. Query using DP. Score based ranking ... Mining of structurally similar proteins from SCOP at 95% database ...
SCOP 95. database. Top Hits. Query using DP. Score based ranking ... Mining of structurally similar proteins from SCOP at 95% database ...
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Introduction to Proteomics tools in Homology Modelingweb PowerPoint PPT Presentation
Introduction to Proteomics tools in Homology Modelingweb - Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...
Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...
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Dr Dek Woolfson University of Sussex Centre for Biomolecular Design PowerPoint PPT Presentation
Dr Dek Woolfson University of Sussex Centre for Biomolecular Design - Session 1 Protein structure: the basic building blocks ... Structural Classification of Proteins (SCOP) is excellent: http://scop.mrc-lmb.cam.ac.uk/scop/ 1.1 ...
Session 1 Protein structure: the basic building blocks ... Structural Classification of Proteins (SCOP) is excellent: http://scop.mrc-lmb.cam.ac.uk/scop/ 1.1 ...
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Myoglobins PowerPoint PPT Presentation
Myoglobins - SCOP structural classification of proteins. ... Root: scop. Class: All beta proteins. Fold: Concanavalin A-like lectins/glucanases ...
SCOP structural classification of proteins. ... Root: scop. Class: All beta proteins. Fold: Concanavalin A-like lectins/glucanases ...
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MACHINE LEARNING TECHNIQUES APPLIED TO PROTEIN FOLD AND REMOTE HOMOLOGUE RECOGNITION PowerPoint PPT Presentation
MACHINE LEARNING TECHNIQUES APPLIED TO PROTEIN FOLD AND REMOTE HOMOLOGUE RECOGNITION - Goal - correct SCOP fold/superfamily prediction ... Currently increasing coverage of SCOP superfamilies and optimising existing ...
Goal - correct SCOP fold/superfamily prediction ... Currently increasing coverage of SCOP superfamilies and optimising existing ...
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Nitrogenase PowerPoint PPT Presentation
Nitrogenase - ... from N to C. Find the fold class from SCOP (scop.berkeley.edu) ... About SCOP. Chain ... numbered the strands, look in SCOP for the 'Fold' with the ...
... from N to C. Find the fold class from SCOP (scop.berkeley.edu) ... About SCOP. Chain ... numbered the strands, look in SCOP for the 'Fold' with the ...
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26S Proteasome and Protein Stability PowerPoint PPT Presentation
26S Proteasome and Protein Stability - CATH and SCOP are two of these, each containing 950-1400 protein superfamilies ... SCOP database. Classification scheme: Class, ... HMM's also useful at SCOP ...
CATH and SCOP are two of these, each containing 950-1400 protein superfamilies ... SCOP database. Classification scheme: Class, ... HMM's also useful at SCOP ...
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Advanced bioinformatics tools for analyzing the Arabidopsis genome PowerPoint PPT Presentation
Advanced bioinformatics tools for analyzing the Arabidopsis genome - Figure 2. SCOP results, super-family level. ... Here, if two proteins share the first three SCOP sccs ids, e.g., d.126.1.1 and d. ...
Figure 2. SCOP results, super-family level. ... Here, if two proteins share the first three SCOP sccs ids, e.g., d.126.1.1 and d. ...
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Computational Short Cuts to Protein Structure and Function: Fold Recognition Methods. PowerPoint PPT Presentation
Computational Short Cuts to Protein Structure and Function: Fold Recognition Methods. - SCOP: up to 7 folds per function and up to 15 functions per fold ... SCOP (Structural Classification of Proteins, scop.berkeley.edu, Murzin et. al. ...
SCOP: up to 7 folds per function and up to 15 functions per fold ... SCOP (Structural Classification of Proteins, scop.berkeley.edu, Murzin et. al. ...
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Bioinformatics is a Field of a Distributed Knowledge: Databases and Servers. PowerPoint PPT Presentation
Bioinformatics is a Field of a Distributed Knowledge: Databases and Servers. - SCOP: up to 7 folds per function and up to 15 functions per fold ... SCOP (Structural Classification of Proteins, scop.berkeley.edu, Murzin et. al. ...
SCOP: up to 7 folds per function and up to 15 functions per fold ... SCOP (Structural Classification of Proteins, scop.berkeley.edu, Murzin et. al. ...
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1. intermediate proteins. PowerPoint PPT Presentation
1. intermediate proteins. - ???? ??? ????? ??? ?????? ????? ?????? (MSA) ??????? ?????. ... ??????? ?????? PSI-BLAST ?????? ????????? ??????? ?- Pfam, SCOP, COG ??????. ...
???? ??? ????? ??? ?????? ????? ?????? (MSA) ??????? ?????. ... ??????? ?????? PSI-BLAST ?????? ????????? ??????? ?- Pfam, SCOP, COG ??????. ...
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BCB 444544 PowerPoint PPT Presentation
BCB 444544 - BCB 444/544 F07 ISU Dobbs #21 - Protein Secondary Structure Prediction ... SCOP = Structural Classification of Proteins ... http://scop.mrc-lmb.cam.ac.uk/scop ...
BCB 444/544 F07 ISU Dobbs #21 - Protein Secondary Structure Prediction ... SCOP = Structural Classification of Proteins ... http://scop.mrc-lmb.cam.ac.uk/scop ...
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Tema 14. Bases of protein structure and structural prediction. Structural data bank. Protein Data Ba PowerPoint PPT Presentation
Tema 14. Bases of protein structure and structural prediction. Structural data bank. Protein Data Ba - Clasification: SCOP, CATH. PDBSUM. CATH Hierarchy. C: Class (secondary structure content) ... SCOP. Structural Classification of Proteins. Family. Clear evolutive relationship ...
Clasification: SCOP, CATH. PDBSUM. CATH Hierarchy. C: Class (secondary structure content) ... SCOP. Structural Classification of Proteins. Family. Clear evolutive relationship ...
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Principles and application of molecular of Bioinformatics sequence analysis. BINF 5230 PowerPoint PPT Presentation
Principles and application of molecular of Bioinformatics sequence analysis. BINF 5230 - No single text is required for this course. ... structural and evolutionary relationships: CATH, SCOP and FSSP databases. Root: scop ...
No single text is required for this course. ... structural and evolutionary relationships: CATH, SCOP and FSSP databases. Root: scop ...
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Protein Function Prediction Based on Domain Content PowerPoint PPT Presentation
Protein Function Prediction Based on Domain Content - (SCOP ID - 63380) (SCOP ID 52343) 100% IEA ... domain-like (SCOP ID = 56059) Lots of different enzymes forming carbon nitrogen bonds ...
(SCOP ID - 63380) (SCOP ID 52343) 100% IEA ... domain-like (SCOP ID = 56059) Lots of different enzymes forming carbon nitrogen bonds ...
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CITATE si FLORI PowerPoint PPT Presentation
CITATE si FLORI - ... Hans Christian Anderson Viata nu este o stinta exacta, este o arta. Samuel Butler Toate animalele, exceptand omul, stiu principalul scop al ...
... Hans Christian Anderson Viata nu este o stinta exacta, este o arta. Samuel Butler Toate animalele, exceptand omul, stiu principalul scop al ...
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Protein structure introduction PowerPoint PPT Presentation
Protein structure introduction - FSSP, SCOP and CATH databases were screened for all dissimilar domains that ... FSSP assignments compared against CATH, and against SCOP. ...
FSSP, SCOP and CATH databases were screened for all dissimilar domains that ... FSSP assignments compared against CATH, and against SCOP. ...
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Department of Computer Science, PowerPoint PPT Presentation
Department of Computer Science, - SCOP classification of 1B6C. Superfamily: Protein Kinase like (PK like) ... Pick families from SCOP, EC or other classifications ...
SCOP classification of 1B6C. Superfamily: Protein Kinase like (PK like) ... Pick families from SCOP, EC or other classifications ...
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Testing sequence comparison methods with structure similarity PowerPoint PPT Presentation
Testing sequence comparison methods with structure similarity - ASTRAL SCOP: Structural Classification Of Proteins ... True positives: in same SCOP family, or false positives: not in same family ...
ASTRAL SCOP: Structural Classification Of Proteins ... True positives: in same SCOP family, or false positives: not in same family ...
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Markov chains PowerPoint PPT Presentation
Markov chains - From Markov Chains to Hidden Markov Models (HMM) ... Hidden Markov Model. for protein sequences. three types ... E.g. SCOP http://scop.mrc-lmb.cam.ac.uk/scop ...
From Markov Chains to Hidden Markov Models (HMM) ... Hidden Markov Model. for protein sequences. three types ... E.g. SCOP http://scop.mrc-lmb.cam.ac.uk/scop ...
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Automatic Information Retrieval from Bioinformatics Websites PowerPoint PPT Presentation
Automatic Information Retrieval from Bioinformatics Websites - SwissProt & TrEMBL (http://us.expasy.org/sprot/) SCOP (http://scop.mrc-lmb.cam.ac.uk/scop ... NCBI BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) PSIPRED (http: ...
SwissProt & TrEMBL (http://us.expasy.org/sprot/) SCOP (http://scop.mrc-lmb.cam.ac.uk/scop ... NCBI BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) PSIPRED (http: ...
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Gfarm Grid File System for Distributed and Parallel Data Computing PowerPoint PPT Presentation
Gfarm Grid File System for Distributed and Parallel Data Computing - SCOP domains. PDP domains. CE matches PDB vs. SCOP. 90% sequence non ... SCOP, PDB. Cluster configuration of Worldwide iGAP/Gfarm data analysis. 2500. 52.048 ...
SCOP domains. PDP domains. CE matches PDB vs. SCOP. 90% sequence non ... SCOP, PDB. Cluster configuration of Worldwide iGAP/Gfarm data analysis. 2500. 52.048 ...
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EMISPHER 3rd EuroMEDiterranean Conference, PowerPoint PPT Presentation
EMISPHER 3rd EuroMEDiterranean Conference, - location (database, scop,'jdbc:mysql://comas.soi.city.ac.uk','u','p' ... SCOP Superfamily(Domain1, Superfamily1), SCOP Superfamily(Domain2, Superfamily2) ...
location (database, scop,'jdbc:mysql://comas.soi.city.ac.uk','u','p' ... SCOP Superfamily(Domain1, Superfamily1), SCOP Superfamily(Domain2, Superfamily2) ...
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Methods of Protein Structure Alignment PowerPoint PPT Presentation
Methods of Protein Structure Alignment - Methods of Protein Structure Alignment. David Hoksza. Charles University in Prague ... SCOP (Structural Classification of Proteins) ...
Methods of Protein Structure Alignment. David Hoksza. Charles University in Prague ... SCOP (Structural Classification of Proteins) ...
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Machine learning and protein structure PowerPoint PPT Presentation
Machine learning and protein structure - Rules were learnt for 45 of the most popular folds in the SCOP database. ... SCOP contains parallel beta-sheet barrel, closed; ...
Rules were learnt for 45 of the most popular folds in the SCOP database. ... SCOP contains parallel beta-sheet barrel, closed; ...
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Bioinformatics and Evolutionary Genomics PowerPoint PPT Presentation
Bioinformatics and Evolutionary Genomics - ... of homology by sequence similarity (SCOP, Blundels Bus) ... The results of this are stored in the SCOP database (Blundel's bus) Structural alignment ...
... of homology by sequence similarity (SCOP, Blundels Bus) ... The results of this are stored in the SCOP database (Blundel's bus) Structural alignment ...
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CHIMIOTERAPIA ANTICANCEROASA (CITOSTATICELE) PowerPoint PPT Presentation
CHIMIOTERAPIA ANTICANCEROASA (CITOSTATICELE) - CHIMIOTERAPIA ANTICANCEROASA (CITOSTATICELE) Definitie SM utilizate n bolile neoplazice scop de a: distruge celulele canceroase opri proliferarea acestora Tumora ...
CHIMIOTERAPIA ANTICANCEROASA (CITOSTATICELE) Definitie SM utilizate n bolile neoplazice scop de a: distruge celulele canceroase opri proliferarea acestora Tumora ...
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Introduction to Bioinformatics PowerPoint PPT Presentation
Introduction to Bioinformatics - Title: PowerPoint Presentation Author: Robert A. Scott Last modified by: heringa Created Date: 4/8/2002 2:53:29 AM Document presentation format: On-screen Show
Title: PowerPoint Presentation Author: Robert A. Scott Last modified by: heringa Created Date: 4/8/2002 2:53:29 AM Document presentation format: On-screen Show
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Forum for the Future PowerPoint PPT Presentation
Forum for the Future - SCOP. HEPI. ELWa. University and. Research. NIACE. Further ... UUK/SCOP Programme of policy development, training and tool development has started (1 yr) ...
SCOP. HEPI. ELWa. University and. Research. NIACE. Further ... UUK/SCOP Programme of policy development, training and tool development has started (1 yr) ...
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Protein structure viewing: PowerPoint PPT Presentation
Protein structure viewing: - 2. Protein Classification: SCOP and CATH databases. 3. Families, Patterns, Motifs - InterPro. ... The SCOP database aims to classify. proteins according to structural ...
2. Protein Classification: SCOP and CATH databases. 3. Families, Patterns, Motifs - InterPro. ... The SCOP database aims to classify. proteins according to structural ...
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Bioinformatics course PowerPoint PPT Presentation
Bioinformatics course - Sequence similarity is observable; homology is a hypothesis based on observation. We want to know whether two ... E.g. SCOP http://scop.mrc-lmb.cam.ac.uk/scop ...
Sequence similarity is observable; homology is a hypothesis based on observation. We want to know whether two ... E.g. SCOP http://scop.mrc-lmb.cam.ac.uk/scop ...
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CISC 467667 Intro to Bioinformatics Fall 2005 Protein Structure Prediction PowerPoint PPT Presentation
CISC 467667 Intro to Bioinformatics Fall 2005 Protein Structure Prediction - Little or no improvement using multiple hidden layers. Surpassing 70% by ... SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/ FSSP: PDB: http://www.rcsb.org/pdb ...
Little or no improvement using multiple hidden layers. Surpassing 70% by ... SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/ FSSP: PDB: http://www.rcsb.org/pdb ...
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Author: Jason Weston et., al PowerPoint PPT Presentation
Author: Jason Weston et., al - Search biosequences from online ... Use protein 3-D structure database SCOP as golden standard. ... 7329 protein domains with known 3D structure on SCOP. ...
Search biosequences from online ... Use protein 3-D structure database SCOP as golden standard. ... 7329 protein domains with known 3D structure on SCOP. ...
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Michael Driscoll PowerPoint PPT Presentation
Michael Driscoll - SCOP Colleges 94 Group (80%) FE Colleges CMU (incl ex SCOP) HE ... Opportunity for SCOP colleges. Enlargement of sector and change in. the meaning of University ...
SCOP Colleges 94 Group (80%) FE Colleges CMU (incl ex SCOP) HE ... Opportunity for SCOP colleges. Enlargement of sector and change in. the meaning of University ...
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SeanPaul Brankin Crowell PowerPoint PPT Presentation
SeanPaul Brankin Crowell - builds on existing Supermarkets Code of Practice (SCOP) 3. GSCOP. Introduces ... SCOP not a success. Will it happen? CC currently consulting. voluntary scheme ...
builds on existing Supermarkets Code of Practice (SCOP) 3. GSCOP. Introduces ... SCOP not a success. Will it happen? CC currently consulting. voluntary scheme ...
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Functional and structural genomics using PEDANT PowerPoint PPT Presentation
Functional and structural genomics using PEDANT - (ii)PSI-BLAST search with SCOP against (I) abd saving resulting profiles ... (iii)construct a SCOP profile library using IMPALA (iv)IMPALA search with each ...
(ii)PSI-BLAST search with SCOP against (I) abd saving resulting profiles ... (iii)construct a SCOP profile library using IMPALA (iv)IMPALA search with each ...
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The AngloSaxon PowerPoint PPT Presentation
The AngloSaxon - Scops & Gleemen-professional minstrels & assistants ... and arrogance were valued leadership qualities (think professional wrestling) ...
Scops & Gleemen-professional minstrels & assistants ... and arrogance were valued leadership qualities (think professional wrestling) ...
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Genomics in Drug Discovery PowerPoint PPT Presentation
Genomics in Drug Discovery - involved in all kinds of life processes. Understanding protein ... Protein comparison coupled to structure related databases (PDB, SCOP, etc.) Systems biology ...
involved in all kinds of life processes. Understanding protein ... Protein comparison coupled to structure related databases (PDB, SCOP, etc.) Systems biology ...
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Evolving Models of Biological Sequence Similarity PowerPoint PPT Presentation
Evolving Models of Biological Sequence Similarity - a molecule composed of a linear sequence of smaller ... ( e.g. Pfam, SCOP) Organize around functional and homologous groups. ... Open opportunity, SCOP catalog ...
a molecule composed of a linear sequence of smaller ... ( e.g. Pfam, SCOP) Organize around functional and homologous groups. ... Open opportunity, SCOP catalog ...
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DDPIn Distance and Density Based Protein Indexing PowerPoint PPT Presentation
DDPIn Distance and Density Based Protein Indexing - SCOP (Structural Classification of Proteins) no need for an alignment. indexing various features ... classification against SCOP. Experimental results ...
SCOP (Structural Classification of Proteins) no need for an alignment. indexing various features ... classification against SCOP. Experimental results ...
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Recognising, supporting and rewarding public engagement activities PowerPoint PPT Presentation
Recognising, supporting and rewarding public engagement activities - We want to explore with our partners whether there is scope for ... Patricia Ambrose SCOP. Sue Hordijenko The British Association. Fiona MacLeod Universities UK ...
We want to explore with our partners whether there is scope for ... Patricia Ambrose SCOP. Sue Hordijenko The British Association. Fiona MacLeod Universities UK ...
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Structural Characterization of Proteins using Residues Environments PowerPoint PPT Presentation
Structural Characterization of Proteins using Residues Environments - Select 100 random SCOP families in ASTRAL 40. X-ray crystallographic structures only ... Analysis of a random member from each of 100 random families (SCOP) ...
Select 100 random SCOP families in ASTRAL 40. X-ray crystallographic structures only ... Analysis of a random member from each of 100 random families (SCOP) ...
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Protein Homology Detection Using String Alignment Kernels PowerPoint PPT Presentation
Protein Homology Detection Using String Alignment Kernels - Problem: classification of protein sequence data into families and superfamilies ... SCOP: Structural Classification of Proteins ...
Problem: classification of protein sequence data into families and superfamilies ... SCOP: Structural Classification of Proteins ...
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Superposition PowerPoint PPT Presentation
Superposition - Vectors, matrices and other geometry issues. General Superposition concepts ... Allows identification of structural homologues (CATH and SCOP) ...
Vectors, matrices and other geometry issues. General Superposition concepts ... Allows identification of structural homologues (CATH and SCOP) ...
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How do I access the PowerPoint PPT Presentation
How do I access the - Blue - text is a new query term (eg SCOP classification) ... Structure summary SCOP classification. How many (all alpha) proteins? ...
Blue - text is a new query term (eg SCOP classification) ... Structure summary SCOP classification. How many (all alpha) proteins? ...
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