Phred PowerPoint PPT Presentations
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Vector screening and masking. Cross_Match (local alignment program) x vector.seq. screened/masked file - seqs_fasta.screen. Conversion - phd to fasta. phd2fasta.pl ...
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UNIX (free to academic users) DNA assembly package for high through-put ... Trimming of the vector sequence to yield only the insert DNA is an example of ...
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touring. phred.org ...
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Phred score Direct identification of the causal gene for a monogenic disorder by exome sequencing * * * * * * * Marker alleles that are physically close tend to ...
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Base calls added by either ABI or Phred processing software. Phred also adds confidence values for each base, providing a probability of ...
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Trimming (trim or trim_alt algorithms) Phred does the base ... Each base has assigned a chance of failure. 1% = 0,01 = 10-2 = Phred 20. Base calling & trimming ...
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For more detailed information please see the 'Advanced PowerPoint presentations. ... WinZip and Aladdin Expander, instead of StuffIt Expander. Downloading Phred Files ...
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Determining the full nucleotide sequence of one strain of an organism ... Assemble the reads by using phred/phrap/consed softwares. Contig 1. Contig 2. Contig 3 ...
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Barbara White, School of Information Technology. Home. link. link ... Barbara White, School of Information Technology. Custom Design. Page 1. link. Page 3. link ...
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Online Mendelian Inheritance in Man. Database that links diseases and genes. TIGR ... Most automated annotation engines have ORF finding capabilities. ...
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Biojava org.biojava.bio org.biojava.bio.dist org.biojava.bio.dp org.biojava.bio.dp.onehead ... org.biojava.utils.io org.biojava.utils.stax org.biojava.utils.xml
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Using WinZip and StuffIt Expander. Multiple Files. Additional Chromatogram Viewers. 2 ... WinZip and Aladdin Expander, instead of StuffIt Expander. 7 ...
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... Maq BWA Bowtie RMAP Eland SOAP SOAP2 MOSAIK SOCS PatMaN ZOOM PASS PerM RazerS segemehl MPSCAN BFAST Lastz BLAT Genome Metagenome Gene annotation Gene ...
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Clone smaller seqments of the genome. Labor intensive, slow ... Develop technology for human genome project. Examine the genomes of a wide range of microbes ...
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WWW and X GUIs. Comprehensive. Widely available. Similar ... Several GUIs (java, WWW, X) Excellent GUI including interactive graphical output. Comprehensive ...
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Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02
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High throughput sequencing method that employs automated sequencing of ... 8 vertebrates (human, mouse, rat, fugu, zebrafish) 2 plants (arabadopsis, rice) ...
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The Extraction of Single Nucleotide Polymorphisms and the Use of Current Sequencing Tools Stephen Tetreault Department of Mathematics and Computer Science
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Most genome will be sequenced and can be sequenced; few problem are unsolvable. ... Assembly: Process of taking raw single-pass reads into ...
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Cut mutant band from gel. Sequence band. Set up sequencing reaction. Submit to ... FINCH TV. Components of Performing a BLAST. The Bioinformatics Process ...
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Chronic Disease Prevention: The Power of Public Health 11th World Congress on Public Health Conference August 2006 By Dr. John Frank, Scientific Director,
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CRAM: reference-based compression format developed by Vadim Zalunin
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WORKPLACE Health Promotion
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The Barcode of Life. Integrating machine learning techniques for species ... Dimacs BOL Data Analysis Working Group meeting. September 26 2005. Rebecka Jornsten ...
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DNA polymerase (a natural enzyme) extends 2-stranded DNA over a 1-stranded template ... Physical shear put it in a blender, or. Restriction digest ...
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... from mixtures Haplotyping Simulated SMRT Sequencing Data Platform Comparisons Other Technologies Mass spectrometry TEM ... Read Alignment FASTQ Format ...
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Genome Annotation Continued This week s lab. Genome annotation - web based databases for assigning gene function.
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Northern Communities Coming Together to Advance Tobacco Control: ... Porcupine Health Unit. Sudbury & District Health Unit. Timiskaming Health Unit ...
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GigAssembler * * * * * * * * * * * * * * * * * * * * * * * * * Currently available single-molecule next-gen sequencing platforms monitor the sequencing of single DNA ...
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... its easy for the programmers Open Source Bioinformatics Almost all of the bioinformatics software that you need to do ... multiple alignment Phylip ...
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Title: PowerPoint Presentation Author: ken shiokari Last modified by: Administrator Created Date: 6/29/2004 5:54:37 PM Document presentation format
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Repeats in the Genomes. Kmer Words Hashing and Distribution. Relational Matrix ... Euler (UCSD, USC) P.A. Pevzner, H. Tang, M.S. Waterman, RECOMB (2001) ...
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RRFSS Evaluation Group: Amira Ali, Elaine Hector, Jane ... RRFSS reps, epidemiologists in non-participating HUs, MOHLTC, ISR, Chief MOH, MOH of all HUs ...
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http://www.hyseq.com/content/131.php. http://citeseer.nj.nec.com/context/471959/0 ... Greedy algorithm: The idea behind a greedy algorithm is to perform a single ...
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DNA Sequencing DNA sequencing How we obtain the sequence of nucleotides of a species Which representative of the species? Which human? Answer one: Answer two: it ...
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Workplace Wellness Consultant. What is Workplace Health Promotion? ... STEP 5: Present individual AND corporate health profiles. ...
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The operations are colour coded to suggest which of the category of bioinformatics tool discussed above they would typically employ.
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Assigned reading: Ch 13, Service 2006 review paper. DNA ... Mountain grasshopper(Podisma pedestris): 16.5 Gb. Tiger salamander (Ambystoma tigrinum): 31 Gb ...
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Any single hamster cell contains ~ 5 to 10 disconnected, non-overlapping fragments. ... Human genome has 3 x 10 9 bps. A 6.9 x coverage will leave ~3,000,000 ...
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Evidence: mtDNA. Multiregional Evolution ... Proponents of the theory doubt mtDNA and other genetic evidence. DNA Sequencing. Goal: ...
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DNA Sequencing Next few topics DNA Sequencing Sequencing strategies Hierarchical Online (Walking) Whole Genome Shotgun Sequencing Assembly Gene Recognition The ...
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The Korn shell provides a random number generator ... The Korn shell's function feature is an expanded version of that found in the Bourne shell ...
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Single Nucleotide Polymorphism. Anshu Bhardwaj. Research Fellow ... (http://zebrafish.doc.ic.ac.uk/Sean/) SNP Finder: For analyzing user-submitted. trace data ...
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Feasibility & Acceptability of The Nurse-Family Partnership Home Visitation Program in Ontario Susan Jack RN, PhD McMaster University 4th National Community Health ...
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Genomics. The Human Genome Project. Mapping and Sequencing the Genomes of Model Organisms ... Lander and Waterman equation. poisson distribution. Po = e-m ...
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Analysis of SAGE Data: An Introduction Kevin R. Coombes Section of Bioinformatics
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PDbase: A database of Parkinsons Diseaserelated genes and genetic variation using substantia nigra E
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Genome Sequencing and Assembly High throughput Sequencing Xiaole Shirley Liu Jun Liu STAT115, STAT215 * * [Enter any extra notes here; leave the item ID line at the ...
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Title: Why detect QTL? Author: bh18 Last modified by: Ben Hayes Created Date: 2/14/2003 4:27:29 AM Document presentation format: On-screen Show (4:3)
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Why genomics? Genomics represents a complete change in the way we are able to think about the life sciences. Genomics enables rapid and efficient discovery of ...
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Outline to SNP bioinformatics lecture Brief introduction SNPs in cell biology SNP discovery SNP assessment SNP databases SNPs in genome browsers Single Nucleotide ...
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methylase, restriction. Physical fragmentation. Others? 10/4/09 ... Restriction nuclease digestions. BamHI, EcoRI, etc. Shared vs Unshared fragments. Draw ...
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... Mycoplasma hyopneumoniae J e Mycoplasma hyopneumoniae 7448 (www.genesul.lncc.br) Genomas em andamento no LABINFO Xylella fastidiosa Ann1 e Xylella ...
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td - Table Data Cell th - Table Header tr - Table Row. Review. CS 100 ... If site is on the black list then refuse to make an Internet connection ...
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Future Challenges in Bioinformatics Introduction Introduction: How RRX got involved Life sciences context: How bioinformatics came to be important
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Here we consider the use of Bioinformatics tools rather than their design and construction ... comprehensive range of bioinformatics tools for sequence ...
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