110 Phrap PPTs View free & download

Phred / Phrap /Consed Genome/Sequence Assembly PowerPoint PPT Presentation

Phred / Phrap /Consed Genome/Sequence Assembly - Vector screening and masking. Cross_Match (local alignment program) x vector.seq. screened/masked file - seqs_fasta.screen. Conversion - phd to fasta. phd2fasta.pl ...

Vector screening and masking. Cross_Match (local alignment program) x vector.seq. screened/masked file - seqs_fasta.screen. Conversion - phd to fasta. phd2fasta.pl ...

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Genome Sequencing, Fragment Assembly, and the use of Consed, Phred, and Phrap PowerPoint PPT Presentation

Genome Sequencing, Fragment Assembly, and the use of Consed, Phred, and Phrap - UNIX (free to academic users) DNA assembly package for high through-put ... Trimming of the vector sequence to yield only the insert DNA is an example of ...

UNIX (free to academic users) DNA assembly package for high through-put ... Trimming of the vector sequence to yield only the insert DNA is an example of ...

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b. The second round of global phrap assembly was done on April 1, 2002 on 77,022 Project ESTs. Of these, 70,074 were 5' ESTs and 6,948 were 3' ESTs. They were assembled into 11,758 contigs. - Distribution of research investigators by objective Objectives and coordination structure Obj. 6 Genome structure & evolution The Structure and Function

Distribution of research investigators by objective Objectives and coordination structure Obj. 6 Genome structure & evolution The Structure and Function

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Genome Sequence determination PowerPoint PPT Presentation

Genome Sequence determination - Determining the full nucleotide sequence of one strain of an organism ... Assemble the reads by using phred/phrap/consed softwares. Contig 1. Contig 2. Contig 3 ...

Determining the full nucleotide sequence of one strain of an organism ... Assemble the reads by using phred/phrap/consed softwares. Contig 1. Contig 2. Contig 3 ...

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Konstantinos Mavrommatis - Konstantinos Mavrommatis

Konstantinos Mavrommatis

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Shotgun Sequencing PowerPoint PPT Presentation

Shotgun Sequencing - Most genome will be sequenced and can be sequenced; few problem are unsolvable. ... Assembly: Process of taking raw single-pass reads into ...

Most genome will be sequenced and can be sequenced; few problem are unsolvable. ... Assembly: Process of taking raw single-pass reads into ...

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Genome Characterization PowerPoint PPT Presentation

Genome Characterization - methylase, restriction. Physical fragmentation. Others? 10/4/09 ... Restriction nuclease digestions. BamHI, EcoRI, etc. Shared vs Unshared fragments. Draw ...

methylase, restriction. Physical fragmentation. Others? 10/4/09 ... Restriction nuclease digestions. BamHI, EcoRI, etc. Shared vs Unshared fragments. Draw ...

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The design, construction and use of software tools to generate, store, annotate, access and analyse data and information relating to Molecular Biology - WWW and X GUIs. Comprehensive. Widely available. Similar ... Several GUIs (java, WWW, X) Excellent GUI including interactive graphical output. Comprehensive ...

WWW and X GUIs. Comprehensive. Widely available. Similar ... Several GUIs (java, WWW, X) Excellent GUI including interactive graphical output. Comprehensive ...

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DNA Sequencing PowerPoint PPT Presentation

DNA Sequencing - DNA Sequencing Basic Techniques Project Design Process Improvements Project Size/Type 500 bases 2500 bases 10 kbp 150 kbp 3 Mbp simple repeats BIG 1 locus EST,STS ...

DNA Sequencing Basic Techniques Project Design Process Improvements Project Size/Type 500 bases 2500 bases 10 kbp 150 kbp 3 Mbp simple repeats BIG 1 locus EST,STS ...

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Sequencing, Sequence Alignment PowerPoint PPT Presentation

Sequencing, Sequence Alignment - Sequencing, Sequence Alignment & Software Lushan Wang, Shandong University

Sequencing, Sequence Alignment & Software Lushan Wang, Shandong University

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Novel multi-platform next generation assembly methods for mammalian genomes PowerPoint PPT Presentation

Novel multi-platform next generation assembly methods for mammalian genomes - Novel multi-platform next generation assembly methods for mammalian genomes The Baylor College of Medicine, Australian Government and University of Connecticut teamed ...

Novel multi-platform next generation assembly methods for mammalian genomes The Baylor College of Medicine, Australian Government and University of Connecticut teamed ...

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EST cleaning and clustering - EST cleaning and clustering

EST cleaning and clustering

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Discovery of Genes for Improved Cellulose PowerPoint PPT Presentation

Discovery of Genes for Improved Cellulose - Discovery of Genes for Improved Cellulose and Cellulose-Extractability from Poplar Secondary Xylem Jill L Wegrzyn1, Jennifer M. Lee2, Andrew J. Eckert2, Charlyn J ...

Discovery of Genes for Improved Cellulose and Cellulose-Extractability from Poplar Secondary Xylem Jill L Wegrzyn1, Jennifer M. Lee2, Andrew J. Eckert2, Charlyn J ...

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CISC 667 Intro to Bioinformatics (Fall 2005) Whole genome sequencing PowerPoint PPT Presentation

CISC 667 Intro to Bioinformatics (Fall 2005) Whole genome sequencing - Any single hamster cell contains ~ 5 to 10 disconnected, non-overlapping fragments. ... Human genome has 3 x 10 9 bps. A 6.9 x coverage will leave ~3,000,000 ...

Any single hamster cell contains ~ 5 to 10 disconnected, non-overlapping fragments. ... Human genome has 3 x 10 9 bps. A 6.9 x coverage will leave ~3,000,000 ...

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Gen - ... Mycoplasma hyopneumoniae J e Mycoplasma hyopneumoniae 7448 (www.genesul.lncc.br) Genomas em andamento no LABINFO Xylella fastidiosa Ann1 e Xylella ...

... Mycoplasma hyopneumoniae J e Mycoplasma hyopneumoniae 7448 (www.genesul.lncc.br) Genomas em andamento no LABINFO Xylella fastidiosa Ann1 e Xylella ...

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Contig Assembly PowerPoint PPT Presentation

Contig Assembly - High throughput sequencing method that employs automated sequencing of ... 8 vertebrates (human, mouse, rat, fugu, zebrafish) 2 plants (arabadopsis, rice) ...

High throughput sequencing method that employs automated sequencing of ... 8 vertebrates (human, mouse, rat, fugu, zebrafish) 2 plants (arabadopsis, rice) ...

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The Genome Access Course Genome Analysis - The Genome Access Course Genome Analysis

The Genome Access Course Genome Analysis

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Genome sequencing and annotation PowerPoint PPT Presentation

Genome sequencing and annotation - Clone smaller seqments of the genome. Labor intensive, slow ... Develop technology for human genome project. Examine the genomes of a wide range of microbes ...

Clone smaller seqments of the genome. Labor intensive, slow ... Develop technology for human genome project. Examine the genomes of a wide range of microbes ...

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The Medicago truncatula genome: a progress report - The Medicago truncatula genome: a progress report

The Medicago truncatula genome: a progress report

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Double-Ended Shotgun Sequencing of PA14 PowerPoint PPT Presentation

Double-Ended Shotgun Sequencing of PA14 - Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02

Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02

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Computational Biology PowerPoint PPT Presentation

Computational Biology - http://www.hyseq.com/content/131.php. http://citeseer.nj.nec.com/context/471959/0 ... Greedy algorithm: The idea behind a greedy algorithm is to perform a single ...

http://www.hyseq.com/content/131.php. http://citeseer.nj.nec.com/context/471959/0 ... Greedy algorithm: The idea behind a greedy algorithm is to perform a single ...

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Computers and Programming for Biologists PowerPoint PPT Presentation

Computers and Programming for Biologists - ... its easy for the programmers Open Source Bioinformatics Almost all of the bioinformatics software that you need to do ... multiple alignment Phylip ...

... its easy for the programmers Open Source Bioinformatics Almost all of the bioinformatics software that you need to do ... multiple alignment Phylip ...

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BIOINFORMATIKA PowerPoint PPT Presentation

BIOINFORMATIKA - ... Bacteria Archaeacteria Az emberi genetikai llom ny emberi csal d emberi sejt sejtmag genom mitokondri lis genom 22 ... (malaria parasite ...

... Bacteria Archaeacteria Az emberi genetikai llom ny emberi csal d emberi sejt sejtmag genom mitokondri lis genom 22 ... (malaria parasite ...

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Genome sequence assembly PowerPoint PPT Presentation

Genome sequence assembly - Break DNA into random fragments (8-10x coverage) Sequence the ends ... Caveat: numbers based on artificially chopping up. the genome of Wolbachia pipientis dMel ...

Break DNA into random fragments (8-10x coverage) Sequence the ends ... Caveat: numbers based on artificially chopping up. the genome of Wolbachia pipientis dMel ...

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slides - Repeats in the Genomes. Kmer Words Hashing and Distribution. Relational Matrix ... Euler (UCSD, USC) P.A. Pevzner, H. Tang, M.S. Waterman, RECOMB (2001) ...

Repeats in the Genomes. Kmer Words Hashing and Distribution. Relational Matrix ... Euler (UCSD, USC) P.A. Pevzner, H. Tang, M.S. Waterman, RECOMB (2001) ...

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The Architecture of Unusual Things PowerPoint PPT Presentation

The Architecture of Unusual Things - Rodney Brooks at the MIT AI Lab has explored subsumption architectures ... Siegel, 1996, Creating Killer Web Sites, Hayden. IBM Software Group Rational software ...

Rodney Brooks at the MIT AI Lab has explored subsumption architectures ... Siegel, 1996, Creating Killer Web Sites, Hayden. IBM Software Group Rational software ...

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Sequencing - Be aware of the importance of sequence searching and sequence alignment in biology and medicine ... every 20 residues the alignment is suspicious. 29. Lecture ...

Be aware of the importance of sequence searching and sequence alignment in biology and medicine ... every 20 residues the alignment is suspicious. 29. Lecture ...

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Sequence Analysis Tools Introduction PowerPoint PPT Presentation

Sequence Analysis Tools Introduction - The operations are colour coded to suggest which of the category of bioinformatics tool discussed above they would typically employ.

The operations are colour coded to suggest which of the category of bioinformatics tool discussed above they would typically employ.

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Parallel EST Clustering by Kalyanaraman, Aluru, and Kothari PowerPoint PPT Presentation

Parallel EST Clustering by Kalyanaraman, Aluru, and Kothari - Maintain and updates EST Clusters. Others generate batches of promising pairs, perform alignment ... Number of non-singleton clusters. Number of singleton ...

Maintain and updates EST Clusters. Others generate batches of promising pairs, perform alignment ... Number of non-singleton clusters. Number of singleton ...

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Genomics - Genomics. The Human Genome Project. Mapping and Sequencing the Genomes of Model Organisms ... Lander and Waterman equation. poisson distribution. Po = e-m ...

Genomics. The Human Genome Project. Mapping and Sequencing the Genomes of Model Organisms ... Lander and Waterman equation. poisson distribution. Po = e-m ...

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Outline to SNP bioinformatics lecture PowerPoint PPT Presentation

Outline to SNP bioinformatics lecture - Outline to SNP bioinformatics lecture Brief introduction SNPs in cell biology SNP discovery SNP assessment SNP databases SNPs in genome browsers Single Nucleotide ...

Outline to SNP bioinformatics lecture Brief introduction SNPs in cell biology SNP discovery SNP assessment SNP databases SNPs in genome browsers Single Nucleotide ...

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Why genomics? PowerPoint PPT Presentation

Why genomics? - Why genomics? Genomics represents a complete change in the way we are able to think about the life sciences. Genomics enables rapid and efficient discovery of ...

Why genomics? Genomics represents a complete change in the way we are able to think about the life sciences. Genomics enables rapid and efficient discovery of ...

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NCBI Data Mining Tools: NCBI Genome Workbench PowerPoint PPT Presentation

NCBI Data Mining Tools: NCBI Genome Workbench - NCBI National Center for Biotechnology Information. NCBI Data Mining Tools: ... Sequin-style 5-Column Feature Table format. Newick-format phylogenetic trees ...

NCBI National Center for Biotechnology Information. NCBI Data Mining Tools: ... Sequin-style 5-Column Feature Table format. Newick-format phylogenetic trees ...

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The design, construction and use of software tools to generate, store, annotate, access and analyse PowerPoint PPT Presentation

The design, construction and use of software tools to generate, store, annotate, access and analyse - Here we consider the use of Bioinformatics tools rather than their design and construction ... comprehensive range of bioinformatics tools for sequence ...

Here we consider the use of Bioinformatics tools rather than their design and construction ... comprehensive range of bioinformatics tools for sequence ...

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Future Challenges in Bioinformatics PowerPoint PPT Presentation

Future Challenges in Bioinformatics - Future Challenges in Bioinformatics Introduction Introduction: How RRX got involved Life sciences context: How bioinformatics came to be important

Future Challenges in Bioinformatics Introduction Introduction: How RRX got involved Life sciences context: How bioinformatics came to be important

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Introduction to Genomic Sequencing Assembly Annotation Diego Martinez PowerPoint PPT Presentation

Introduction to Genomic Sequencing Assembly Annotation Diego Martinez - Introduction to Genomic Sequencing Assembly Annotation Diego Martinez Why do we want to know the sequence of an entire genome?? To know all the genes then ...

Introduction to Genomic Sequencing Assembly Annotation Diego Martinez Why do we want to know the sequence of an entire genome?? To know all the genes then ...

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Genome Sequencing and Assembly High throughput Sequencing PowerPoint PPT Presentation

Genome Sequencing and Assembly High throughput Sequencing - Genome Sequencing and Assembly High throughput Sequencing Xiaole Shirley Liu Jun Liu STAT115, STAT215 * * [Enter any extra notes here; leave the item ID line at the ...

Genome Sequencing and Assembly High throughput Sequencing Xiaole Shirley Liu Jun Liu STAT115, STAT215 * * [Enter any extra notes here; leave the item ID line at the ...

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DNA Sequencing - DNA Sequencing Lecture 9, Tuesday April 29, 2003

DNA Sequencing Lecture 9, Tuesday April 29, 2003

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Parallel EST Clustering by Kalyanaraman, Aluru, and Kothari - Cluster fragments of cDNA. Related to fragment assembly' ... Depth of its root in GST threshhold. CMSC 838T Presentation. 21. On-demand Pair Generation ...

Cluster fragments of cDNA. Related to fragment assembly' ... Depth of its root in GST threshhold. CMSC 838T Presentation. 21. On-demand Pair Generation ...

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Assembling and Annotating the Draft Human Genome - Assembling and Annotating the Draft Human Genome

Assembling and Annotating the Draft Human Genome

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Genome Sequencing and Annotation - Ab Initio Gene Discovery. 5' 3' GC box. CAAT. box. GC. box. TATA ... Statistics-based (ab initio) Methods. Ab initio approach predict genes directly using the ...

Ab Initio Gene Discovery. 5' 3' GC box. CAAT. box. GC. box. TATA ... Statistics-based (ab initio) Methods. Ab initio approach predict genes directly using the ...

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DNA Sequencing

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Graph Algorithms and Fragment Assembly PowerPoint PPT Presentation

Graph Algorithms and Fragment Assembly - Graph Algorithms in Bioinformatics Outline Introduction to Graph Theory Eulerian & Hamiltonian Cycle Problems Benzer Experiment and Interval Graphs DNA Sequencing The ...

Graph Algorithms in Bioinformatics Outline Introduction to Graph Theory Eulerian & Hamiltonian Cycle Problems Benzer Experiment and Interval Graphs DNA Sequencing The ...

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Genomics - Harder fragment assembly and genome mapping; such as packages from the ... from the AATAAA Signal is Required for Efficient Formation of mRNA 3' Termini. ...

Harder fragment assembly and genome mapping; such as packages from the ... from the AATAAA Signal is Required for Efficient Formation of mRNA 3' Termini. ...

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Computational Molecular Biology PowerPoint PPT Presentation

Computational Molecular Biology - Detection of repetitive sequences (mostly untranslated) ... BLAST/QUASAR. search, clustering. Assembly, Consensus sequences. Visualization ...

Detection of repetitive sequences (mostly untranslated) ... BLAST/QUASAR. search, clustering. Assembly, Consensus sequences. Visualization ...

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Introduction to Bioinformatics: Lecture II From Molecular Processes to String Matching PowerPoint PPT Presentation

Introduction to Bioinformatics: Lecture II From Molecular Processes to String Matching - JM - http://folding.chmcc.org. 1. Introduction to Bioinformatics: Lecture II ... The web site for the Introduction to Bioinformatics course. Updates ...

JM - http://folding.chmcc.org. 1. Introduction to Bioinformatics: Lecture II ... The web site for the Introduction to Bioinformatics course. Updates ...

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Bioinform - Title: Bioinform tica Author: Daniel Guariz Pinheiro Last modified by: Daniel Guariz Pinheiro Created Date: 2/27/2006 5:59:01 PM Document presentation format

Title: Bioinform tica Author: Daniel Guariz Pinheiro Last modified by: Daniel Guariz Pinheiro Created Date: 2/27/2006 5:59:01 PM Document presentation format

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An Eulerian path approach to DNA fragment assembly Pavel A'Pevzner, Haixu Tang, and Michael S' Water PowerPoint PPT Presentation

An Eulerian path approach to DNA fragment assembly Pavel A'Pevzner, Haixu Tang, and Michael S' Water - An Eulerian path approach to DNA fragment assembly ... A nematode (C. elegans) A fly (Drosophila melanogaster) A plant (Arabidopsis thaliana) ...

An Eulerian path approach to DNA fragment assembly ... A nematode (C. elegans) A fly (Drosophila melanogaster) A plant (Arabidopsis thaliana) ...

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Reseach Training Presentation PowerPoint PPT Presentation

Reseach Training Presentation - Patterns of genetic diversity, effects of the present and the past ... PCR: only one primer; without the step 95 C 2min for the unfoldment of templates ...

Patterns of genetic diversity, effects of the present and the past ... PCR: only one primer; without the step 95 C 2min for the unfoldment of templates ...

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PowerPoint-Pr PowerPoint PPT Presentation

PowerPoint-Pr - Interoperability; Post-Genomics is the BIG PROBLEM. Biopharma/Economic Reality ... EMBOSS, Artemis, Phylip, Darwin, MAGPIE. BioSCOUT, SRS, BIOPENDIUM, GCG ...

Interoperability; Post-Genomics is the BIG PROBLEM. Biopharma/Economic Reality ... EMBOSS, Artemis, Phylip, Darwin, MAGPIE. BioSCOUT, SRS, BIOPENDIUM, GCG ...

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The Mutation Viewer Pipeline: An EndtoEnd Solution for Storage, Analysis, and Visualization of Mutat PowerPoint PPT Presentation

The Mutation Viewer Pipeline: An EndtoEnd Solution for Storage, Analysis, and Visualization of Mutat - The Human Genome Project. What is Mutation Profiling? ... BLAST to genome ensures single amplicon generation. Heuristic-based amplicon selection ...

The Human Genome Project. What is Mutation Profiling? ... BLAST to genome ensures single amplicon generation. Heuristic-based amplicon selection ...

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Genome Assembly PowerPoint PPT Presentation

Genome Assembly - ... .00 51.00 377044.00 23012.00 196.00 80.00 62631932.00 275273.00 40135.00 325.00 138833812.00 138833812.00 275273.00 24566.00 46535500.00 31.00 3796782.00 15553 ...

... .00 51.00 377044.00 23012.00 196.00 80.00 62631932.00 275273.00 40135.00 325.00 138833812.00 138833812.00 275273.00 24566.00 46535500.00 31.00 3796782.00 15553 ...

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Largescale genome projects PowerPoint PPT Presentation

Largescale genome projects - Essentially Sub-cloning. Generation of small insert libraries in a well characterised vector. ... is defined as sequenced on both strands using multiple clones. ...

Essentially Sub-cloning. Generation of small insert libraries in a well characterised vector. ... is defined as sequenced on both strands using multiple clones. ...

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The Genome Access Course Genome Analysis - The Genome Access Course Genome Analysis

The Genome Access Course Genome Analysis

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Don%20Seto - Don Seto

Don Seto

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DNA sequencing: Basic idea PowerPoint PPT Presentation

DNA sequencing: Basic idea - DNA polymerase (a natural enzyme) extends 2-stranded DNA over a 1-stranded template ... Physical shear put it in a blender, or. Restriction digest ...

DNA polymerase (a natural enzyme) extends 2-stranded DNA over a 1-stranded template ... Physical shear put it in a blender, or. Restriction digest ...

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Phrap PowerPoint PPT Presentations