1,033 Orthologous PPTs View free & download

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. PowerPoint PPT Presentation

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. - Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. 70 Kbp surrounding putative soybean orthologous genes to ...

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. 70 Kbp surrounding putative soybean orthologous genes to ...

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FOG: HighResolution Fungal Orthologous Groups PowerPoint PPT Presentation

FOG: HighResolution Fungal Orthologous Groups - FOG: High-Resolution Fungal Orthologous Groups. Ren van der Heijden ... Phylogenetic trees are analyzed using LOFT resulting in high-resolution orthology ...

FOG: High-Resolution Fungal Orthologous Groups. Ren van der Heijden ... Phylogenetic trees are analyzed using LOFT resulting in high-resolution orthology ...

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Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. PowerPoint PPT Presentation

Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. - Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. 70 Kbp surrounding putative soybean orthologous ...

Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. 70 Kbp surrounding putative soybean orthologous ...

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Phylogenetic Trees PowerPoint PPT Presentation

Phylogenetic Trees - Orthology : two genes are orthologous iff. they diverged following a speciation event. ... Orthology functional equivalence. Primates. Rodents. Human. ancestral ...

Orthology : two genes are orthologous iff. they diverged following a speciation event. ... Orthology functional equivalence. Primates. Rodents. Human. ancestral ...

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Gene Duplication PowerPoint PPT Presentation

Gene Duplication - Cones and Rods. Rod cells are responsible for vision at low ... Rat 2. Orthologous genes are usually more similar in terms of function than paralogous ones! ...

Cones and Rods. Rod cells are responsible for vision at low ... Rat 2. Orthologous genes are usually more similar in terms of function than paralogous ones! ...

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InnateDB - Specific to human and mouse with bovine orthology information. ... Integrated Orthology & Gene Order Information. Mouse & Cow Orthologous Genes ...

Specific to human and mouse with bovine orthology information. ... Integrated Orthology & Gene Order Information. Mouse & Cow Orthologous Genes ...

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Comparative Genomics of Drosophila PowerPoint PPT Presentation

Comparative Genomics of Drosophila - Mercator: Multiple whole-genome orthology map construction ... Set of orthologous segments forms an orthology map. Mercator: Input. Species 1. Species 2 ...

Mercator: Multiple whole-genome orthology map construction ... Set of orthologous segments forms an orthology map. Mercator: Input. Species 1. Species 2 ...

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microRNA and Gene Regulation PowerPoint PPT Presentation

microRNA and Gene Regulation - Have been described in invertebrates and vertebrates: flies, ... in humans is orthologous to Zebrafish miR-430), which direct early embryonic development. ...

Have been described in invertebrates and vertebrates: flies, ... in humans is orthologous to Zebrafish miR-430), which direct early embryonic development. ...

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OBO and OBD: Biomedical ontologies and data PowerPoint PPT Presentation

OBO and OBD: Biomedical ontologies and data - OBO and OBD: Biomedical ontologies and data. Chris Mungall ... orthology. Mutations in orthologous genes give rise to similar phenotypes ...

OBO and OBD: Biomedical ontologies and data. Chris Mungall ... orthology. Mutations in orthologous genes give rise to similar phenotypes ...

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Phylogenetic footprinting PowerPoint PPT Presentation

Phylogenetic footprinting - Phylogenetic footprinting is a method for the discovery of ... Orthologous vs. Analogous ... Analogous sequences have same kind of function but are not related ...

Phylogenetic footprinting is a method for the discovery of ... Orthologous vs. Analogous ... Analogous sequences have same kind of function but are not related ...

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Protein homology I: Evolution and comparison of protein sequences PowerPoint PPT Presentation

Protein homology I: Evolution and comparison of protein sequences - Also sometimes defined as 'Similar due to descent from a common ancestor. ... Substitution rates in genes encoding orthologous rodent and human proteins. ...

Also sometimes defined as 'Similar due to descent from a common ancestor. ... Substitution rates in genes encoding orthologous rodent and human proteins. ...

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A Large Family of Conserved Noncoding Elements PowerPoint PPT Presentation

A Large Family of Conserved Noncoding Elements - 1. Discovery: Some classes of ancient repetitive elements show ... Opossum (Monodelphis domestica) ~1000 copies. At least 600 have orthologous copies in human ...

1. Discovery: Some classes of ancient repetitive elements show ... Opossum (Monodelphis domestica) ~1000 copies. At least 600 have orthologous copies in human ...

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A Large Family of Conserved Noncoding Elements - 1. Discovery: Some classes of ancient repetitive elements show ... Opossum (Monodelphis domestica) ~1000 copies. At least 600 have orthologous copies in human ...

1. Discovery: Some classes of ancient repetitive elements show ... Opossum (Monodelphis domestica) ~1000 copies. At least 600 have orthologous copies in human ...

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CMBI - Sequence similarity, Homology has the largest relevance for ... If A is orthologous to B and B is orthologous to C than A is not necessarily orthologous to C ...

Sequence similarity, Homology has the largest relevance for ... If A is orthologous to B and B is orthologous to C than A is not necessarily orthologous to C ...

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TraFaC - Detecting Cis-Regulatory Element Clusters in Orthologous and Coordinately Expressed Genes ... E.g. PAX6: Human Vs Puffer fish (Fugu rubripes) The Motivation. ...

Detecting Cis-Regulatory Element Clusters in Orthologous and Coordinately Expressed Genes ... E.g. PAX6: Human Vs Puffer fish (Fugu rubripes) The Motivation. ...

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Benchmarking%20Orthology%20in%20Eukaryotes PowerPoint PPT Presentation

Benchmarking%20Orthology%20in%20Eukaryotes - ... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...

... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...

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Alternative Splicing and Disease: an overview PowerPoint PPT Presentation

Alternative Splicing and Disease: an overview - Alternative Splicing and Disease: an overview Shoba Ranganathan Professor and Chair Bioinformatics Dept. of Chemistry and Biomolecular Sciences & Adjunct Professor

Alternative Splicing and Disease: an overview Shoba Ranganathan Professor and Chair Bioinformatics Dept. of Chemistry and Biomolecular Sciences & Adjunct Professor

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Medical Informatics PowerPoint PPT Presentation

Medical Informatics - ... Unified Medical Language System (UMLS) Gene World Biomedical World Molecular Function = elemental activity/task the tasks performed by individual gene products; ...

... Unified Medical Language System (UMLS) Gene World Biomedical World Molecular Function = elemental activity/task the tasks performed by individual gene products; ...

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Comparative genomics analysis of NtcA regulons in cyanobacteria: Regulation of nitrogen assimilation and its coupling to photosynthesis PowerPoint PPT Presentation

Comparative genomics analysis of NtcA regulons in cyanobacteria: Regulation of nitrogen assimilation and its coupling to photosynthesis - ... Regulation of nitrogen assimilation and its coupling to photosynthesis ... Some genes bear NtcA promoters might coordinate photosynthesis and nitrogen fixation. ...

... Regulation of nitrogen assimilation and its coupling to photosynthesis ... Some genes bear NtcA promoters might coordinate photosynthesis and nitrogen fixation. ...

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Medical Informatics - BMC Bioinformatics 8(1): 392 [Epub ahead of print] Applications: For functional enrichment For candidate gene prioritization Why another gene prioritization method?

BMC Bioinformatics 8(1): 392 [Epub ahead of print] Applications: For functional enrichment For candidate gene prioritization Why another gene prioritization method?

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LECTURE 1: Phylogeny and Systematics - LECTURE 1: Phylogeny and Systematics

LECTURE 1: Phylogeny and Systematics

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Using%20the%20T-Coffee%20Multiple%20Sequence%20Alignment%20Package%20I%20-%20Overview PowerPoint PPT Presentation

Using%20the%20T-Coffee%20Multiple%20Sequence%20Alignment%20Package%20I%20-%20Overview - Using the T-Coffee Multiple Sequence Alignment Package I - Overview C dric Notredame Comparative Bioinformatics Group Bioinformatics and Genomics Program

Using the T-Coffee Multiple Sequence Alignment Package I - Overview C dric Notredame Comparative Bioinformatics Group Bioinformatics and Genomics Program

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Nitrogen assimilation in plant-associated bacteria PowerPoint PPT Presentation

Nitrogen assimilation in plant-associated bacteria - Nitrogen assimilation in plant-associated bacteria. Gail M. Preston. Department of Plant Sciences ... Yersinia pestis KIM. Salmonella species. Escherichia coli ...

Nitrogen assimilation in plant-associated bacteria. Gail M. Preston. Department of Plant Sciences ... Yersinia pestis KIM. Salmonella species. Escherichia coli ...

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Benchmarking Orthology in Eukaryotes PowerPoint PPT Presentation

Benchmarking Orthology in Eukaryotes - Benchmarked orthology determination methods. BBH: Best Bidirectional Hit ... Hard to point out the best' orthology determination method ...

Benchmarked orthology determination methods. BBH: Best Bidirectional Hit ... Hard to point out the best' orthology determination method ...

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Predicting Gene Functions from Text Using a Cross-Species Approach PowerPoint PPT Presentation

Predicting Gene Functions from Text Using a Cross-Species Approach - Predicting Gene Functions from Text Using a Cross-Species Approach Emilia Stoica and Marti Hearst SIMS University of California, Berkeley

Predicting Gene Functions from Text Using a Cross-Species Approach Emilia Stoica and Marti Hearst SIMS University of California, Berkeley

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Comparative%20genomics%20to%20identify%20DNA%20binding%20motifs PowerPoint PPT Presentation

Comparative%20genomics%20to%20identify%20DNA%20binding%20motifs - Comparative genomics to identify DNA binding motifs Saurabh Sinha Dept. of Computer Science University of Illinois, Urbana-Champaign

Comparative genomics to identify DNA binding motifs Saurabh Sinha Dept. of Computer Science University of Illinois, Urbana-Champaign

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Introduction to HomoloGene PowerPoint PPT Presentation

Introduction to HomoloGene - The extent to which nucleotide or protein sequences are related. ... Orthology describes genes in different species that derive from a common ancestor. ...

The extent to which nucleotide or protein sequences are related. ... Orthology describes genes in different species that derive from a common ancestor. ...

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Comparative genomics and proteomics in Ensembl PowerPoint PPT Presentation

Comparative genomics and proteomics in Ensembl - Comparative genomics and proteomics in Ensembl. November 2004 ... The Compara database is one single multispecies database. Gene orthology/paralogy prediction ...

Comparative genomics and proteomics in Ensembl. November 2004 ... The Compara database is one single multispecies database. Gene orthology/paralogy prediction ...

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InnateDB - Grey nodes do not have an annotated subcellular localization (from Gene Ontology ... David Lynn, Chris Fjell, Jennifer Gardy, Karsten Hokamp, Nicolas Richard, ...

Grey nodes do not have an annotated subcellular localization (from Gene Ontology ... David Lynn, Chris Fjell, Jennifer Gardy, Karsten Hokamp, Nicolas Richard, ...

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Affymetrix Expression Data PowerPoint PPT Presentation

Affymetrix Expression Data - Affymetrix oligo microarrays: HG-U133 A and B (human) and MG-U74v2 A, B and C (mouse) ... SNOMED: Systematised Nomenclature of Medicine ...

Affymetrix oligo microarrays: HG-U133 A and B (human) and MG-U74v2 A, B and C (mouse) ... SNOMED: Systematised Nomenclature of Medicine ...

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Similarity vs. Homology PowerPoint PPT Presentation

Sir Richard Owen, Lectures on the Comparative Anatomy and Physiology of the ... Orthology. Orthologs: Hemoglobin A. Sharing a Common Ancestor: Paralogy ...

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Conservation%20of%20transcription%20factor%20binding%20sites%20in%20plants PowerPoint PPT Presentation

Conservation%20of%20transcription%20factor%20binding%20sites%20in%20plants - The significant motifs will be tested for such a bias by shuffling the promoter ... Department of Plant Systems Biology, Flanders Interuniversity Institute for ...

The significant motifs will be tested for such a bias by shuffling the promoter ... Department of Plant Systems Biology, Flanders Interuniversity Institute for ...

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Example: Ortholog Prediction PowerPoint PPT Presentation

Example: Ortholog Prediction - the same gene in two species', typically, same function. Paralogs: two genes related by at least one ... Catalase peroxidase in E. coli, yeast, Synechocystis, ...

the same gene in two species', typically, same function. Paralogs: two genes related by at least one ... Catalase peroxidase in E. coli, yeast, Synechocystis, ...

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Xenolog: Homologs resulting from horizontal gene transfer PowerPoint PPT Presentation

Xenolog: Homologs resulting from horizontal gene transfer - Orthologs diverged only after speciation tend to have ... Nucleic acids. proteins. BIOMOLECULES!! LEARN TO USE THE INFORMATION THAT IS ALREADY OUT THERE! ...

Orthologs diverged only after speciation tend to have ... Nucleic acids. proteins. BIOMOLECULES!! LEARN TO USE THE INFORMATION THAT IS ALREADY OUT THERE! ...

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Evolution of bacterial regulatory systems PowerPoint PPT Presentation

Evolution of bacterial regulatory systems - Basic assumption: regulons are conserved ... Zinc repressors - recapitulation. nZUR- nZUR- AdcR. pZUR. TTAACYRGTTAA. GATATGTTATAACATATC ...

Basic assumption: regulons are conserved ... Zinc repressors - recapitulation. nZUR- nZUR- AdcR. pZUR. TTAACYRGTTAA. GATATGTTATAACATATC ...

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Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications (I), and Orthology PowerPoint PPT Presentation

Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications (I), and Orthology - Title: Amsterdam 2004 Author: Berend Snel Last modified by: Snel Created Date: 1/10/2003 9:04:34 AM Document presentation format: On-screen Show (4:3)

Title: Amsterdam 2004 Author: Berend Snel Last modified by: Snel Created Date: 1/10/2003 9:04:34 AM Document presentation format: On-screen Show (4:3)

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Nothing in (computational) biology makes PowerPoint PPT Presentation

Nothing in (computational) biology makes - Title: No Slide Title Author: Michael Fetchko Last modified by: Michael Fetchko Created Date: 11/20/2002 3:37:49 PM Document presentation format: On-screen Show

Title: No Slide Title Author: Michael Fetchko Last modified by: Michael Fetchko Created Date: 11/20/2002 3:37:49 PM Document presentation format: On-screen Show

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Orthology%20Analysis PowerPoint PPT Presentation

Orthology%20Analysis - ... OrthoMCL OrthoMCL (blast) proteomes HOPS Orthostrapper (tree) Pfam RIO (tree) Pfam TOGA/EGO COGs (blast) TIGR gene index COGs / KOGs COGs (blast) ...

... OrthoMCL OrthoMCL (blast) proteomes HOPS Orthostrapper (tree) Pfam RIO (tree) Pfam TOGA/EGO COGs (blast) TIGR gene index COGs / KOGs COGs (blast) ...

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The Genome Gamble, Knowledge or Carnage PowerPoint PPT Presentation

The Genome Gamble, Knowledge or Carnage - ... Leading the Way @ Organon. Tim Hulsen, Oss, November ... (only accessible from Organon, CMBI and SARA) 10 (3) Testing the advantages of our ortholog set ...

... Leading the Way @ Organon. Tim Hulsen, Oss, November ... (only accessible from Organon, CMBI and SARA) 10 (3) Testing the advantages of our ortholog set ...

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Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence Hidemasa Bono e PowerPoint PPT Presentation

Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence Hidemasa Bono e - Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence. Hidemasa Bono et al. Genome Res. 1998 8: 203-210. Chun-Yu Chen. Institute of ...

Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence. Hidemasa Bono et al. Genome Res. 1998 8: 203-210. Chun-Yu Chen. Institute of ...

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Reconstructing the metabolic network of a bacterium from its genome: the construction of LacplantCyc PowerPoint PPT Presentation

Reconstructing the metabolic network of a bacterium from its genome: the construction of LacplantCyc - In silico reconstruction of the metabolic pathways of ... determine orthology (use phylogeny and gene-context to determine evolutionary relationship) ...

In silico reconstruction of the metabolic pathways of ... determine orthology (use phylogeny and gene-context to determine evolutionary relationship) ...

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The Genome Gamble, Knowledge or Carnage? - Co-expression = Cab (-1 =corr. =1) Ca'b' = Cab ... Ca'b' = Cab. Human/Mouse. Increases probability that A and B are involved in the same process ...

Co-expression = Cab (-1 =corr. =1) Ca'b' = Cab ... Ca'b' = Cab. Human/Mouse. Increases probability that A and B are involved in the same process ...

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Evolutionary Genomics of Proteobacteria and the MEGA Program PowerPoint PPT Presentation

Evolutionary Genomics of Proteobacteria and the MEGA Program - A change from working with anatomical and behavioral characteristics to metabolic and molecular. ... Emmanuelle Lerat1 , Vincent Daubin2 , Nancy A. Moran1* The Paper: ...

A change from working with anatomical and behavioral characteristics to metabolic and molecular. ... Emmanuelle Lerat1 , Vincent Daubin2 , Nancy A. Moran1* The Paper: ...

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Orthology Analysis PowerPoint PPT Presentation

Orthology Analysis - Pairwise orthology confidence by orthostrapping' ... Orthology is not transitive! ... 286356 pairwise orthology assignments ( 75% orthostrap) ...

Pairwise orthology confidence by orthostrapping' ... Orthology is not transitive! ... 286356 pairwise orthology assignments ( 75% orthostrap) ...

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BIOINFORMATIK I UEBUNG 2 PowerPoint PPT Presentation

BIOINFORMATIK I UEBUNG 2 - Title: Slide 1 Author: Andreas Prokesch Last modified by: Hackl Hubert Created Date: 1/23/2004 7:41:20 AM Document presentation format: Bildschirmpr sentation (4:3)

Title: Slide 1 Author: Andreas Prokesch Last modified by: Hackl Hubert Created Date: 1/23/2004 7:41:20 AM Document presentation format: Bildschirmpr sentation (4:3)

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Computational Analyses of Eukaryotic Gene Evolution PowerPoint PPT Presentation

Computational Analyses of Eukaryotic Gene Evolution - Exon Intron Gene Structure Phenomenon due to exon intron structure Alternative Splicing. ... melanogaster 13451 10305 ... drosophila/ 19967 19931 ...

Exon Intron Gene Structure Phenomenon due to exon intron structure Alternative Splicing. ... melanogaster 13451 10305 ... drosophila/ 19967 19931 ...

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Whole Genome Sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urin PowerPoint PPT Presentation

Whole Genome Sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urin - Whole Genome Sequence of Staphylococcus saprophyticus reveals the pathogenesis ... through the National Center for Biotechnology Information (www.ncbi.nlm.nih.gov) ...

Whole Genome Sequence of Staphylococcus saprophyticus reveals the pathogenesis ... through the National Center for Biotechnology Information (www.ncbi.nlm.nih.gov) ...

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Terminology - Slide 1

Slide 1

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Fig. 26-3 - Fig. 26-3 Species: Panthera pardus Genus: Panthera Family: Felidae Order: Carnivora Class: Mammalia Phylum: Chordata Kingdom: Animalia Archaea Domain: Eukarya

Fig. 26-3 Species: Panthera pardus Genus: Panthera Family: Felidae Order: Carnivora Class: Mammalia Phylum: Chordata Kingdom: Animalia Archaea Domain: Eukarya

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Diapositive 1 PowerPoint PPT Presentation

Diapositive 1 - GreenPhylDB: A phylogenomic platform for plant comparative genomics ... Oryza sativa and Arabidopsis thaliana model plants of monocotyledon and dicotyledon ...

GreenPhylDB: A phylogenomic platform for plant comparative genomics ... Oryza sativa and Arabidopsis thaliana model plants of monocotyledon and dicotyledon ...

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Combine knowledge, data, and tools to PowerPoint PPT Presentation

Combine knowledge, data, and tools to - Integrates Genomic and Data Analysis Tools ... phycocyanin associated linker protein (cpcC) OmpR subfamily. hypothetical protein (atp1) ...

Integrates Genomic and Data Analysis Tools ... phycocyanin associated linker protein (cpcC) OmpR subfamily. hypothetical protein (atp1) ...

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XOMICS FIRST MEETING June 17th 2005 PowerPoint PPT Presentation

XOMICS FIRST MEETING June 17th 2005 - Full length insert sequencing (MG) Annotation jamboree, Cambridge (MG) Xenbase (NP) ... Annotation jamboree, Cambridge. July 11th 15th Sanger Institute ...

Full length insert sequencing (MG) Annotation jamboree, Cambridge (MG) Xenbase (NP) ... Annotation jamboree, Cambridge. July 11th 15th Sanger Institute ...

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Motif Discovery in Heterogeneous Sequence Data PowerPoint PPT Presentation

Motif Discovery in Heterogeneous Sequence Data - g1.mm. g2.mm. g3.mm. g4.mm. g1.hs. g2.hs. g3.hs. g4.hs. Gelfand et al. 2000 , McGuire et al. 2000 ... g1.mm. g2.mm. g3.mm. g4.mm. g1.hs. g2.hs. g3.hs. g4.hs ...

g1.mm. g2.mm. g3.mm. g4.mm. g1.hs. g2.hs. g3.hs. g4.hs. Gelfand et al. 2000 , McGuire et al. 2000 ... g1.mm. g2.mm. g3.mm. g4.mm. g1.hs. g2.hs. g3.hs. g4.hs ...

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Jahn Lab, Dept. of Plant Breeding, Cornell Objectives Years 24 1.Generate a BAC library from Capsicu PowerPoint PPT Presentation

Jahn Lab, Dept. of Plant Breeding, Cornell Objectives Years 24 1.Generate a BAC library from Capsicu - ... contig through L locus in Capsicum and assess homology to R7/potato, I2/tomato ... TG105 ( 1 cM from I2 in tomato) Is not polymorphic in our cross, ...

... contig through L locus in Capsicum and assess homology to R7/potato, I2/tomato ... TG105 ( 1 cM from I2 in tomato) Is not polymorphic in our cross, ...

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Characterization of Prokaryotic Genomic Structure and Application to Biological Pathway Prediction PowerPoint PPT Presentation

Characterization of Prokaryotic Genomic Structure and Application to Biological Pathway Prediction - Decipher microbial genomes through understanding ... 2-AEP pathway (in Gram-positive microbes): Pathways to utilize phosphonates: NH2CH2CH2PO3H ...

Decipher microbial genomes through understanding ... 2-AEP pathway (in Gram-positive microbes): Pathways to utilize phosphonates: NH2CH2CH2PO3H ...

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A data model for Comparative Genomics PowerPoint PPT Presentation

A data model for Comparative Genomics - A data model for Comparative Genomics. Laboratory for ... II - Biosynthesis of small molecules. III - Macromolecule metabolism. IV - Cell structure ...

A data model for Comparative Genomics. Laboratory for ... II - Biosynthesis of small molecules. III - Macromolecule metabolism. IV - Cell structure ...

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Orthologous PowerPoint PPT Presentations