Title: Microbial Metabolism
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4Applied Microbiology
- Study of practical uses of microbes in food
processing, industrial production, and
biotechnology
5Environmental Microbiology
- study of microbes in their natural habitats
- The study of microorganisms and their activities
in the environment for the purpose of
understanding their role in maintenance of the
biosphere and their potential use in remediating
sites that have been disturbed.
6Microbial Ecology
- Studies the interactions between microbes and
their environments, involving living and
nonliving components
7Organization of Ecosystems
- Biosphere thick envelope of life that surrounds
the earths surface - Made up of
- hydrosphere (water)
- lithosphere (soil)
- atmosphere (air)
- Maintains and creates the conditions of
temperature, light, gases, moisture, and minerals
required for life processes
7
8Energy and Nutritional Flow in Ecosystems
- Organisms derive nutrients and energy from their
habitat. - Food chain or energy pyramid summarizes the
feeding levels - producers provide the fundamental energy
source only organisms that can produce organic
compounds by assimilating inorganic carbon from
the atmosphere most are photosynthetic, also
called autotrophs - consumers feed on other living organisms and
obtain energy from chemical bonds primary,
secondary, tertiary - decomposers primarily microbes, break down and
absorb the organic matter of dead organisms
recycle organic matter into inorganic minerals
and gases, mineralize nutrients
8
9Insert figure 26.3 Trophic and energy pyramid
9
10The Natural Recycling of Bioelements
- Processes by which bioelements and essential
building blocks of protoplasm are recycled
between biotic and abiotic environments - Essential elements are cycled through biological,
geologic, and chemical mechanisms
biogeochemical cycles. - Microorganisms remove elements from their
inorganic reservoirs and convey them into the
food web.
10
11Atmospheric Cycles
- Carbon cycle
- Photosynthesis
- Nitrogen cycle
11
12Lithospheric Cycles
- Sulfur cycle
- Phosphorous cycle
12
13Cycles in the Hydrosphere
13
14The Structure of Aquatic Ecosystems
- Lake is stratified vertically into 3 zones or
strata - photic zone surface to lowest limit of sunlight
penetration - profundal zone edge of the photic zone to lake
sediment - benthic zone organic debris and mud forming the
basin - Stratified horizontally into 2 zones
- littoral zone shoreline, relatively shallow
water - limnetic zone open, deeper water
14
15Insert figure 26.18 Stratification of lake
15
16Aquatic Communities
- Microbial distribution is associated with
sunlight, temperature, oxygen levels, and
available nutrients. - Photic zone is most productive-contains plankton
- phytoplankton variety of photosynthetic algae
and cyanobacteria - zooplankton microscopic consumers
16
17- Large bodies of standing water develop thermal
stratification. - Epilimnion upper region, warmest
- Hypolimnion deeper, cooler
- Thermocline buffer zone between warmest and
coolest layers
17
18Insert figure 26.19 Profiles of a lake
18
19Classification of Microorganisms
20Classification
- Over 1.5 million different organisms have been
identified to date. - Many similarities among living organisms
- Made up of cells surrounded by a plasma
membrane. - Use ATP as energy source.
- Store genetic information as DNA.
- Ribosomes are the site of protein synthesis.
- Both differences and similarities among
organisms are caused by natural selection
(Darwin, 1858). - Organisms can be classified into taxonomic
categories (taxa), based on the differences and
similarities among them.
21Classification
- Ancient Greeks classified all living organisms
into two groups - Kingdom Plantae
- Kingdom Animalia
- In 1850s bacteria and fungi were incorrectly
placed in the Plant Kingdom. - In 1860s Kingdom Protista was proposed to
include bacteria, fungi, algae, and protozoa, but
many scientists still classified bacteria and
fungi as plants.
22Classification
- In 1930s electron microscopy made it clear that
bacterial cells lacked a nucleus. The term
prokaryote was introduced in 1937. - In 1959 Kingdom Fungi was established.
- In 1961 the current definition of the term
prokaryote was established. - In 1968 the Kingdom Prokaryote was accepted by
biologists. - In 1969 Robert Whitaker proposed a five-kingdom
system of biological classification for all
living organisms.
23- Five-Kingdom System of Biological Classification
- Proposed in 1969 by Robert Whitaker
- 1. Kingdom Prokaryotes (Monera) Oldest known
cells. Lived over 3.5 billion years ago. Lack a
nucleus and membrane bound organelles. - The other four kingdoms are eukaryotes. Have a
true nucleus and membrane bound organelles. - 2. Kingdom Protista Mostly unicellular, lack
tissue organization. Most have flagella during
life. - 3. Kingdom Fungi May be unicellular (yeasts) or
multicellular (molds). Many are saprotrophs. - 4. Kingdom Plantae Multicellular,
photosynthetic. - 5. Kingdom Animalia Multicellular, heterotrophs
that ingest food through a mouth or oral cavity.
24Five-Kingdom Classification System
25Prokaryotic Organisms
- Recent developments in molecular biology and
biochemistry have revealed that there are two
types of prokaryotic cells, based on differences
in their ribosomes, cell walls, and metabolism. - 1. Eubacteria True bacteria.
- Cell wall contains peptidoglycan.
- Sensitive to antibiotics.
- 2. Archaeabacteria Ancient bacteria
- Cell walls lack peptidoglycan, resistant to
antibiotics. - Live in extreme environments
- Three kingdoms
- 1. Methanogens Strict anaerobes that produce
methane. - 2. Extreme Halophiles Require high salt
concentrations. - 3. Thermoacidophiles Live in hot, acidic
environments.
26Eukaryotic Organisms
- Eukaryotic Cells
- Have Complex Internal Membrane
System Compartmentalization Mem
brane-Enclosed Organelles - DNA is enclosed in a membrane-bound nucleus
- Includes Animal Plant
cells Eukaryotic Microorganisms
27Prokaryote Eukaryote
- Simpler internal structure
- Absence of nucleus
- One circular chromosome, not in a membrane
- No histones
- No membrane enclosed organelles
- Peptidoglycan cell walls
- Binary fission for cell division
- Smaller
- Contain nucleus
- Paired chromosomes, in nuclear membrane
- Histones
- Membrane enclosed organelles
- Simple (polysaccharide) cell walls
- Cell division by mitosis or meiosis
- Larger
28Structure of Prokaryotic vs. Eukaryotic cell
29Viruses
- Non cellular
- Obligate intracellular parasites
- They must live inside another cell to survive
- Have only one type of nucleic acid
- DNA or RNA (never both)
- Single or Double stranded
- Protein coat (no plasma membrane)
- Few to no enzymes
- Takes enzymes and use host cell metabolic
machinery - No metabolic activity
- They require a host cell to exhibit the
characteristics of life. - Virus diversity
- Different viruses have different hosts
- Only some viruses cause disease
30Size
- Typical prokaryote ?1 - 5 ?m long
- Typical Eukaryotic cell ?10 - 100 ?m
- Typical virus ? 50 - 80 nm
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31
32- ????????????
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(???? 1-2- ???? 64) - ?? ??? ?? ????? ???? ????? ? ?? CO2 ?? ????? ????
???? ? ?? H2O, H2 ?? H2S ?? ????? ????? ???????
??????? ??????. - ????????????? ?? ???????????????
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33- ?????????????? (??????????)
- ????? ?? ???? ?????????? ??????? ????? ?? ????
NH4, NO2, H2S ? ... ? CO2 ?? ????? ???? ???? - ???? ????? ?????.
- ????????? ????????? (???? ????? ???????????? ?
?????????? ?? ????? NH4 ? NO2-) - ????????? ????? (???? ????? ???????? ?? H2S ?
?????????? ?? ????? ?????) - ????????? ??? (???? ????? ??????????? ?? Fe2)
- ????????? ??????? (???? ????? ????????????? ?? H2
) - ???????????? (??????????)
- ???? ????????? ?????? ? ?? ????? ??
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???? ??????? ????????? - 2- ??? ?? ??? ???? ?????? ??????
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????? ??????? (???? 29 wastewater bacteria)
35???? ???? ??????????????? ?? ??? ???? ?? ??????
- Bacteria grow in the presence or absence of free
molecular oxygen - Aerobes, Anaerobes, and Facultative anaerobes
- Aerobes require oxygen for the degradation of
substrate (filamentous organisms
Haliscomenobacter hydrossis and Sphaerotilus
natans, the floc former Zoogloea ramigera, and
the nitrifying bacteria Nitrosomonas and
Nitrobacter. - Active aerobes are not found in anaerobic
digesters. - Anaerobic bacteria do not use free molecular
oxygen for the degradation of substrates. - Anaerobes include sulfate-reducing bacteria and
methane-forming bacteria that use sulfate (SO42-)
and carbon dioxide, respectively.
36Anaerobic bacteria
- There are two important groups of anaerobic
bacteria - Oxygen-tolerant (aerotolerant) anaerobic bacteria
and the oxygen-intolerant (obligate) anaerobic
bacteria. - Obligate anaerobes such as the methaneforming
bacteria die in the presence of free molecular
oxygen. - Obligate anaerobes are not killed by free
molecular oxygen. They are killed by superoxide
(O2-) and hydrogen peroxide (H2O2). - Most obligate anaerobic bacteria including the
methane-forming bacteria lack the enzymes
superoxide dismutase and catalase and succumb to
the toxic effects of superoxide and hydrogen
peroxide.
37Facultative anaerobes
- Between the aerobes and anaerobes are the
facultative anaerobes. - Facultative anaerobic bacteria have the ability
to use free molecular oxygen or another molecule
to degrade substrate. - Facultative anaerobic bacteria have the most
complex enzyme systems with respect to
degradation of substrate. They have one enzyme
system for the use of free molecular oxygen and
have another enzyme system for the use of an
alternate molecule to degrade substrate when
oxygen is not available. - They prefer oxygen to other molecules such as
nitrate (NO3-) - Denitrifying bacteria including Bacillus,
Escherichia, and Pseudomonas are facultative
anaerobic bacteria.
38???????????????? ??? ????? ?? ?? ? ??????
- ???????? (Bacteria)
- ?????? (Fungi)
- ??????????? ?? ????????(Protozoa)
- ???????? ? ???????(Rotifers and Nematodes)
- ??????(Algae)
- ???????(Viruses)
39?????? (?????? yeast? ????? mold? ?????? mushroom)
- ???????????? ????????? ????????? ???? ??? ????? ?
??????????????? - ???? ????? (???? ?????? ??????? ??????? ? ??
?????) - ????? ?? ?????? ????? pH (??? ?? ?????? 2-9? pH
????? ???? ???? ?????? 5.6) ? ????? ????? - ???? ?? ?????? ????? ???? ???? (???? ?? ???????
???? ½ ???? ????????) - ??? ??????? ??????? ?? ?????? ??? ???? ? ????
?????? ???????? ?? ???????? ?????? (?? pH ???? ??
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40Filamentous fungi. Filamentous fungi occasionally
bloom in activated sludge processes due to low pH
or nutrient deficiency. Filamentous fungi are
relatively large in size and display true
branching.
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???-???? ??? ? ?????????? - ????? ???? 66-10 ??? ?? ??? ???? ?? ???
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?????? ?? ??? ???????.
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- ???? ???????????? ?? ????? 3 ?? 20 ????? ?? 1000
???? ?? ???????? ????? ??? ?? ??????????? ???????
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?????? ? ????????? ? ???????? ? ????????
54????????
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????????? ? ?????????????) - ???? ?? ?????? ?? ???? ???? ???? ????? ? I/I
- ???????? ???? ??????? ??? ??????????????? ?
?????????? - ???? ????????? ?? ?????????? ?????? ????? ?????
????? (????? ????? biogas ?? marsh gas). - ????????? (extremophiles) ?? ????? ??? ?? ????
????? 3.5 ???? (???? ?? ???? ????? ??? ???? ????
??? ?????? ????? ? ???? ????? ??? ?????? ???
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????????? ????????????? ????????? ??? ?????
??????. - ?????????????? ??? ???? ?? ?????????????? ??????
??????. - ????????? (????????? ?????)
55... ????????
- ????? ???? ?? ???? ?????? (morphology)?
?????????? ????? ? ????????? - ?????? ????? 0.3-3 µ ?? ?? ????? ?????????? 100 µ
) (Sphaerotilus natans? ???????????? (5-50 µ) ?
?????????? (up to 50 µ) - ????????? ?????? ?? ?? ???? ????? ?????? ?????? ?
???? ??? ????? (???? ??? ?? ??? ?????) - ???? ???????? ?? ?? ???? ???? bacillus? coccus ?
spirillum - ?????? ????? (80 ?? ? 20 ???? ???)(???? ???
???? 90 ??? ? 10 ??????) - ????? ???? C60H87O23N12P ????? ???? C5H7O2N
- ????? ????????? ??????? ????????? (???? 3.2 ????
25 ????) - TRANSPORT MECHANISMS
- Diffusion
- Facilitated diffusion
- Active transport
- Motility and Nutrition
56... ????????
- ????????? ???????? ?? ???? ???? ?? ?? ?????
?????? ???? ??????? (???? ????? ??? ???? ? ????
????? ??? ????) (???? 4.3 ???? 35 ????) - Acetogenic bacteria (??? ?????????) (??? 4.1 ????
35) - Coliforms (??? ???????)
- Cyanobacteria (??? ???????????)
- Denitrifying bacteria (??? ???????)
- Fecal coliforms (??? ???????)
- Fermentative (Acid-forming) bacteria (???
???????) - Filamentous bacteria (??? ???????????????)
- Gliding bacteria (??? ???????)
- Gram-negative, aerobic cocci and rods (???
?????????) - Gram-negative, facultative anaerobic rods (???
?????????) - Hydrolytic bacteria (??? ?????????)
- Methan-forming bacteria (??? ?????????????)
- Nitrifying bacteria (??? ????????????)
57... ????????
- Nocardioforms (??? ????????)
- Pathogenic bacteria (??? ????????????)
- Poly-P bacteria (??? ??????????)
- Saprophytic bacteria (??? ??????????)
- Sheath bacteria (??? ????????????)
- Spirochetes (??? ??????????)
- Sulfur oxidizing bacteria (??? ??????????)
- Sulfur reducing bacteria (??? ?? ???????????)
58?????? ??? ??????
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bacteria) - ???? ?????????? ?????? (???? 65 ?????)
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- ????? ??? ????
- ????? ?????? ? ??????? ???? ?? ??? ?????? (????
67 ?????) - ???? ???????
- ???? ?????
- pH
- ????? ??????
59???????? ?? ????? ????????? ??????
- ????? ?????? ?????
- ????????? (40-60)
- ???????????? (25-50)
- ?????? (8-12)
- ????? ???? ??? ????? ?? ???? ??? ?????
???????????? ??? ? ??????? ??? ?????? ??? - ????????? ???? ???? ????? ???? ??? ????? ??
?????? - BOD5 (???? 216 ???? ?????)
- TOC
- COD (????? ?????? ???? ???? ????? ???? ???? ???
?? CO2? H2O ? ???????) (???? 219 ???? ?????)
60???????? ????? ????????? ??? ????
- ????? ??? ????
Activated sludge - ?? ??? ???? ?? ????? ??? ???? 1- ?????????? ????
??? ????? ???? -
2- ???? ???? - ????? ??? ???? ??????
Conventional activated sludge - ???? ?????? (???? 1500-2500 mg/L ???? ???? ?????
?????? ???????? ??????? ???? ????? ?? ???? ????
???? ???? ????? ????? ????? ?? ???? ????
?????????? ???? ???? ????????? ?? ????? ??????
??? 4 ?? 8 ????) - ???? ?? ?????
- ?????? ???? ???? ????? (MLSS)
- ?????? ???? ???? ???? ????? (MLVSS)(65 ?? 75 ????
MLSS) - ???? ??? ?? ????????????? (???? 227 ?????)
- ???? ???? ?????????
- ?? ???
61.... ???????? ????? ????????? ??? ????
- ???????? ??? ????? ?? ??????? ??? ????
- ??????? ??? ???? ???? ??????? ????????? ? ????
?????? ? ??? - ?????? ???? ?? 1 ?????? ?? 1000 ?????? ?? ?????
- 5 ?? 20 ???? ?? ??????? ????? ?? ???? ?? ???????
???? ????? ??????. - ???????? ?? ???? ????????? ??? ???? ????? ????
??????? ??? ???? ?????. - ?????? ???? ????????? ??? ???? ???? ????????
??????????? ?????????????? ?????????? ????????
???????????? ?????? ????????? ??????????
????????????? ??????????? ? ??? ????????????????
???? ?? ?? ???? ???????????? ??????? ? ?????????? - ????? ????????? ???? ??? ?? ????????? ???? ?????
?????? (SRB) ?? ??? ????? ??? ?????? ?????? ??
?????? - ????? ?? ????????? ????? ?? ??? ???? ???? 108 CFU
?? ??????? ??? - ???? ????????? ????????? ???? ?????? ?????
(???????????? ? ??????????) - ???? ?????? ?? ????? pH ?????? ???? ? ??? ???????
(?????? ??????? ?? ??? ????????? ????????) - ?? ????? ?? ?? ???? ??? ?????
- ????????
62.... ???????? ????? ????????? ??? ????
- ???? CNP ???? ???????? ????? ??? ???? 10051
- ?? ????? ??? ??? ?? ??? ??????? (????? ???? ?
????? ????? ? ??? ?????? ?????) ? ???? F/M ?????
(???? MLSS ????) - ????? ???? ???? ????? ???? ?? ????? ??? ???? 3 ??
4 ??? - ????? ???? ???? ??? ???? ???? ?????? ?? ????? ???
(???? 243 ?????) - SVI ??? ?? mL/g 150 ????????? ???? ???(bulking)
- ????????? ???? ?? ??? ????? ?????? ????? ??? F/M
?????? ???? ???? ?? ? ????? ?????? ???? ???? ??
???? (F/M ????? ???? ?????? ???) - ?? ???? (foaming) ??? ?? ??? ????? ???????? ?
??????????
63??????? ?????? ? ????????? ???????????? ??
- ???????? ?? ???????? ????
- ???? ??? ????????? ??????? ??????? ?????? ????.
- ?? ???? ???????????????? ???????? ???? ????? ? ??
????????? ???????? ?? ????????? ???? ?????? ????. - ???? ?? ????? ?????? ???? ?? ???????? ???? ?????
????. - ???? ?????? ????? ????? ?? ????????????????
???????? ???? ?? ????? ??????? ????? ? ?????????
????? ?? ??????? ????? ?? ? ?????? ????? ????. - ????? ?? ???? ????? ????.
- ???? ?????? ?????? ????? ???? ? ????? ???? ??????
????. - ???????? ???? ???? ????????? ????.
64... ??????? ?????? ? ????????? ???????????? ??
- ???????????????? ???? ??????? ?? ????? ????
- ?????????? ??
- ?????????? ??????
- ???????????? ??????
- ?????????? ????????
- ????????????
- ?????? ? ???????????? ?????????