GenBank????????? - PowerPoint PPT Presentation

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GenBank?????????

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Title: GenBank Author: hubo Last modified by: hubo Created Date: 9/25/2006 7:28:11 AM Document presentation format: – PowerPoint PPT presentation

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Title: GenBank?????????


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GenBank?????????Entrez????
  • ?????????
  • ? ?

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??
GenBank?????????????????(NCBI)????????????
?
GenBank??????????? 1???????????????? 2??????????
????? 3??????????????
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NCBI???? http//www.ncbi.nlm.nih.gov
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GenBank?PubMed(????)?????
  • 1?GenBank??????????????
  • PubMed???????????????????
  • 2?GenBank??????PubMed,GenBank?????????PubMed?
  • 3? GenBank????????????,?PubMed??????????????????,?
    ?GenBank??????????PubMed?

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??
????
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??????
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??????
??????
rasGENE
???????
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????????
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rasGENE
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??????
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????GenBank???
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GenBank?????
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GenBank?????
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GenBank?????
????????????????
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????????????
????? ??????
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????????????
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????
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(?)???????????????????
(?)???????
(?)??????
(?)??????
(?)????
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(?)???????????????????
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?????
  • 1???????????GENE
  • 2????????????ORGN
  • 3???????????AUTH

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??
????
??????
(?)???????????????????
(?)???????
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????????(????)
  • 1??????(GI)???????
  • e.g.6995995
  • 2?GenBank/EMBL/DDBJ?????
  • (1)1???5??????
  • e.g.U12345
  • (2)2???6??????
  • e.g.AY123456,Af123456

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????????(????)
3?RefSeq(Reference Sequence)?????
(1)mRNA ??(NM_) e.g.NM_000492 (2)???DNA???
(NT_) e.g.NT_000347 (3)??????????(NC_)
e.g.NC_000907 (4)????????(NG_)
e.g.NG_000019 (5)??????????????????????(XM,XP,or
XR_) e.g.XM_000483
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????????(????)
4 ? PDB?????1??????3??? e.g.1TUP
???????????? ACCNorACCESSION
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AF123456ACCN
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??
????
??????
(?)???????????????????
(?)???????
(?)??????
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??????????SLEN
1510SLEN
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??
????
??????
(?)???????????????????
(?)???????
(?)??????
(?)??????
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??????????MOLWT
2009MOLWT
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??
????
??????
(?)???????????????????
(?)???????
(?)??????
(?)??????
(?)????
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???????????
  • 1??????????
  • AF114696AF114714ACCN
  • 2?????????
  • 30004000SLEN
  • 3?????????
  • 20022009MOLWT
  • 4???????
  • 2005/012006/09/26MDATorPDAT

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???????
????(Limits)
???/????(Preview/Index)
?????(History)
?????(Clipboard)
??????(Details)
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???/????
?????
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?????
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???????
????(Limits)
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????????????????
  • EST ?????????
  • GSS ??????????
  • CoreNucleotide ??????????????????????

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????????????
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????????????
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????(Limits)
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ras
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?????????
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????(Limits)
???/????(Preview/Index)
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???/??????
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hepatitis b
???????
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??????
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?????????
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rasGENE
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?????????
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??
????
??????
???????
????(Limits)
???/????(Preview/Index)
?????(History)
?????(Clipboard)
??????(Details)
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penicillin-binding
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mycobacterium tuberculosis
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8 AND 4
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penicillin-binding AND mycobacterium
tuberculosisORGN
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Genbank ??
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Genbank ??
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Genbank ??
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Genbank ??
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Genbank ??
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Genbank ??
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Genbank ??
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Genbank ??
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GenBank?????????????
??? ? ? ??? ? ?
misc_feature ??????????????????? promoter ?????
misc_difference ?????????????????? CAAT_signal ????????CAAT?,?RNA????
conflict ????????????????????? TATA_signal ??????TATA?
unsure ????????? -35_signal ???????-35?
old_sequence ????????????? -10_signal ??????Pribow?
variation ????????? GC_signal ??????GC?
modified_base ??????? RBS ???????
gene ??????????????? polyA_signal RNA??????????
misc_signal ????????????????? enhancer ???
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??? ? ? ??? ? ?
attenuator ?????????? CDS ???????
terminator ?????? sig_peptide ????????
rep_origin ??DNA????? transit_peptide ????????
misc_RNA ???RNA??????????RNA?? mat_peptide ????????
prim_transcript ????? intron ???
precursor_RNA ??RNA polyA_site RNA????????????
mRNA ??RNA rRNA ???RNA
5clip ???????????5??? tRNA ??RNA
3 clip ???????????3??? scRNA ????RNA
5UTR 5???? snRNA ??RNA
3UTR exon 3???? ??? snoRNA ?????rRNA???RNA
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??? ? ? ??? ? ?
immunoglobulin_related repeat_unit ???????
C_region ??????????? LTR ???????
D_segment ???????????, T????ß? Satellite ??????
J_ segment ????????????T??a?ß?????? misc_binding ?????????????
N_ region ???????????????? primer_bind ????????????
S_ region ??????????? protein_bind ??????
V_ region ???????????N????? STS ??????
V_ segment ??????????????
misc_recomb ?????????????????
repeat_region ???????????? iDNA ????????DNA
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??? ? ? ??? ? ?
misc_structure ??????????????????????
stem_loop ????
D_loop ????DNA?????
GenBank???????????
??? ? ? ??? ? ?
/allele ????????? /codon_start ??????????,???????????
/bound_moiety ???? /country DNA??????
/cell_type ????????? /db_xref ?????????????
/citation ?????????? /direction DNA????
/clone_lib ????????? /environmental_sample ?????????????????????
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??? ? ? ??? ? ?
/exception ??DNA??????????????,?RNA?? /PCR_conditi-ons ??PCR?????
/frequency ??????????? /pop_variant ????????????
/germline ?????DNA???????????,????????????DNA /product ?????????
/insertion_seq ??????????? /anticodon tRNA?????????????????
/isolate ????????? /cell_line ????????
/lab_host ????????????????? /chromosome ????????
/macronuclear ??DNA???????????? /clone ????????
/note ??????? /codon ??????????????
/organelle ???????? /EC_number ?????????
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??? ? ? ??? ? ?
/cons_splice ??????????5-GT.AG-3'???? /map ?????????????
/cultivar ??????????? /mod_base ????????
/dev_stage ???????????????? /number ?5?3?????????
/evidence ????????????? /organism ?????????????????
/focus ?????????????????????????? /phenotype ??????????
/function ???????? /plasmid ?????????
/haplotype ????????????? /protein_id ???????
/isolation_sou-rce ??????????????????? /proviral ???????????
/label ??????? /rearranged ?????DNA???????????,???????????DNA
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??? ? ? ??? ? ?
/rpt_family ???? /transposon ???
/rpt_unit ????????????? /variety ?????????
/serotype ???????????? /pseudo ???
/sex ????????? /replace ??????????????
/specimen_vou-cher ????????????? /rpt_type ?????????
/strain ??????? /sequenced_m-ol ?????????
/sub_species ???????????? /serovar ????????????
/tissue_lib ??????? /specific_host ?????????
/transgenic ????????????????? /standard-name ???????
/transl_except ?????????????????????? /sub_clone ????????
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??? ? ? ??? ? ?
/sub_strain ????????????
/tissue_type ????????
/translation ???????????????????
/transl_table ??????????????????
/usedin ???????????????
/virion ????
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FASTA??
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? ?!
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SCI???????????????????? ?
?????????????????
  • ????????????
  • ??????
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