Reference: www.biosino.org

1
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• Reference www.biosino.org

2
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• 1????????
• EMBL - EMBL Nucleotide sequence database (EBI)
  
• GenBank - GenBank Nucleotide Sequence database
  (NCBI)
• DDBJ - DNA Data Bank of Japan
• BIOSINO ????????????
• dbEST - Database of Expressed Sequence Tags 
  (NCBI)
• dbSTS - Database of Sequence Tagged Sites (NCBI)

4
2.?????????  Genomic Databases

• GenomeWeb(HGMP) - A catalogue of useful Web sites
  for Genomics with a set of collections of genome
  databases 
• GSDB - Genome Sequence database (NCGR)
• GOLD - Genomes On-line db
• ??????????

5
3.?????????

• NDB - Nucleic Acid Databank (3D structures)
• BNASDB - Nucleic acid structure db from
  University of Pune

6
4.??

• AsDb - Aberrant Splicing db
• ACUTS - Ancient conserved untranslated DNA
  sequences db
• Codon Usage Db  - The frequency of codon use in
  each organism is made searchable through this
  World Wide Web site.
• EPD - Eukaryotic Promoter db
• HOVERGEN - Homologous Vertebrate Genes db
• IMGT - ImMunoGeneTics db Mirror at EBI
• ISIS - Intron Sequence and Information System
• RDP - Ribosomal db Project
• gRNAs db - Guide RNA db
• PLACE - Plant cis-acting regulatory DNA elements
  db

7
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• PlantCARE - Plant cis-acting regulatory DNA
  elements db
• sRNA db - Small RNA db
• ssu rRNA - Small ribosomal subunit db
• lsu rRNA - Large ribosomal subunit db
• 5S rRNA - 5S ribosomal RNA db
• tmRNA Website
• tmRDB - tmRNA dB
• tRNA - tRNA compilation from the University of
  Bayreuth
• uRNADB - uRNA db

8
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• RNA editing - RNA editing site
• RNAmod db - RNA modification db
• TelDB - Multimedia Telomere Resource
• TRADAT - TRAnscription Databases and Analysis
  Tools
• Subviral RNA db - Small circular RNAs db (viroid
  and viroid-like)

9
Transgenics

• Cre Transgenic Database - Cre transgenic mouse
  lines
• Transgenic/Targeted Mutation Database -
  Information on transgenic animals and targeted
  mutations

10
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• SWISS-PROT - SWISS-PROT annotated protein
  sequence db
• PIR-international -The Protein Information
  Resource (protein sequence)
• MIPS - Martinsried institute for protein sequence
  and homology data and yeast genome information

11
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• PROSITE - PROSITE dictionary of protein sites and
  patterns
• InterPro - Integrated Resources of Proteins
  Domains and Functional Sites
• BLOCKS - BLOCKS db
• DOMO - Protein domain db (Automatically
  generated)
• Pfam - Protein families db (HMM derived) Mirror
  at Sanger
• PRINTS - Protein Motif fingerprint db
• ProDom - Protein domain db (Automatically
  generated)
• PROTOMAP - An automatic hierarchical
  classification of SWISS-PROT proteins
• SBASE - SBASE domain db (Protein domain sequence
  library)
• SMART - Protein signalling and extracellular
  domain patterns (Simple Modular Architecture
  Research Tool)
• ProClass - Protein sequence alignments and
  curation of protein families

12
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• PDB - Protein Data Bank Mirrors in EBI
• BioMagResBank - Repository for data on proteins,
  peptides, and nucleic acids from NMR spectroscopy
  
• SWISS-MODEL Repository - Automatically generated
  protein models db
• ModBase - Db of comparative protein structure
  models
• CATH - UCL BSM structural classification of
  proteins
• SCOP - Structural classification of proteins
  Mirror at USA Israel Singapore Australia
• Mol_R_Us - Molecules R Us, browser for PDB
• BMM Domain Server - Biomolecular Modelling
  Laboratory (ICRF) protein domain server
• PRESAGE - Collaborative resource for structural
  genomics

13
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• SBASE - SBASE domain db (Protein domain sequence
  library)
• SMART - Protein signalling and extracellular
  domain patterns (Simple Modular Architecture
  Research Tool)
• ProClass - Protein sequence alignments and
  curation of protein families
• Kabat - Kabat db of protein of immunological
  interest
• PMD - Protein Mutant db

14
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• WORLD-2DPAGE - A complete index of 2D-PAGE db and
  servers
• Phoretix links - Phoretix page of links to 2D gel
  db

15
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• DIP - Db of Interacting Proteins
• INTERACT - Protein-Protein interaction db
• ProNet - Protein-Protein interaction db
• CANSITE - Signal Transduction's Web
• SPAD - Signaling pathway db
• CSNDB - Cell Signaling Networks db

16
??DNA???????????

• DPInteract - DNA-Proteins interactions db

17
??????????????

• AAA - AAA family of ATPases server
  Acetylcholinesterases
• ALDH - Aldehyde dehydrogenase gene superfamily db
  
• Aminoacyl-tRNA synthetases in SWISS-PROT - List
  of aminoacyl-tRNA synthetases in SWISS-PROT
• AARSDB - Aminoacyl-tRNA synthetases db
• Allergens in SWISS-PROT - Nomenclature and index
  of allergens in SWISS-PROT

18
????????????

• AMSDb - Antimicrobial sequences db
• Antibody resource page - Links to antibody
  related Web resources
• Australian venom and toxin db
• Bacillus thuringiensis toxin specificity db
• TFII - Basal transcription factors
• Blood group antigens in SWISS-PROT
• BCGD - Breast cancer genes db from MBCR
• BRENDA - Db of enzyme functional data

19
????????????

• EF-hand CaBP - EF-hand calcium-binding proteins
  db
• CAZy - Carbohydrate-Active enZYmes Web site
• CBS domain - Cystathionine Beta Synthase domain
  WWW page
• CD antigens in SWISS-PROT - Nomenclature for
  surface proteins of human leucocytes (CD)

20
????????????

• CD antigens in PROW - Database on information
  about CD antigens
• Chaperonin - Information on GroEL and GroES
  chaperonins
• Conotoxins - Information on conotoxins from a Web
  site on cone shells?? etc??

21
???????

• CarbBank - Complex Carbohydrate Structure
  Database GlycoSuiteDB - Db of glycan structures
• TGN - The Glycoscience Network
• FCCA - Forum Carbohydrates Coming of Age
• CARBHYD - Carbohydrate information WWW sites
• Monosacharide browser - Space filling Fischer
  projection for monosaccharides

22
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• O-GlycBase - O-glycosylated proteins db
• PhosphoBase - Phosphorylation sites db
• RESID - Db of Amino Acid Modifications

23
???????

• ASDB - Protein products and expression patterns
  of alternatively-spliced genes
• Axeldb - Gene expression in Xenopus
• BodyMap - Human and mouse gene expression data
• EpoDB - Genes expressed in vertebrate RBC
• FlyView - Drosophila development and genetics
• Gene Expression Database (GXD) - Mouse gene
  expression and genomics
• Kidney Development Database - Kidney development
  and gene expression

24
???????

• MAGEST - Ascidian (Halocynthia roretzi) gene
  expression patterns
• Mouse Atlas and Gene Expression Database -
  Spatially-mapped gene expression data
• PEDB - Normal and aberrant prostate gene
  expression
• Tooth Development Database - Gene expression in
  dental tissue
• TRIPLES - TRansposon-Insertion Phenotypes,
  Localization and Expression in Saccharomyces

25
??????????????

• HMGD - Human Gene Mutation db SVD - Sequence
  variation db
• HGBASE - Human Genic Bi-Allelic Sequences db
• The SNP consortium
• dbSNP - Human single nucleotide polymorphism
  (SNP) db
• List of mutation databases from OMIM List of
  mutation databases from IMT (Finland)

26
??????????????

• ADB - Albinism db (Mutations in human genes
  causing albinism) Alpha-glucosidase - Information
  about human acid alpha-glucosidase (GSD-II)
• AR mutations - Human androgen receptor mutation
  db
• Antithrombin mutation db
• Asthma and Allergy gene db
• BIOMDB - Db of mutations causing
  tetrahydrobiopterin deficiencies
• BLMbase - Human BLM mutation db (Bloom snydrom)

27
??????????????

• BTKbase - Human BTK mutation db (X-linked
  agammaglobulinemia)
• CD40Lbase - Human CD40 ligand mutation db
• COL1/3 mutation - Human Type I and III collagen
  mutation db
• CFTR mutation - Human cystic fibrosis mutation db
  (CFTR)
• EMD db - Human Emerin (EMD) mutation db
  (Emery-Dreifuss muscular dystrophy)
• KMeyeDB - Eye disease genes db

28
??????????????

• FVII mutation - Human Factor VII mutation db
• HAMSTeRS - Human Factor VIII mutation db
  (Haemophilia A)
• HAeMB - Human Factor IX mutation db (Haemophilia
  B)
• FBN1 mutation - Human fibrillin 1 mutation db
  (Marfan syndrome)
• G6PD - Human G6PD deficiency resource
• Galt mutation - Human galactose-1-phosphate
  uridylyltransferase mutation db (Galactosemia)

29
??????????????

• HEXAdb - Human Hexosaminidase A mutation db
  (Tay-sachs disease)
• IL2RGbase - Human IL2RG (Interleukin-2 receptor
  gamma) mutation db (X-SCID)
• L1CAM mutation - Human L1CAM mutation db
• LDLR mutation - Human LDLR mutation db (Familial
  hypercholesterolemia)
• LQTSdb - Long QT syndrome db
• NCF1base - Human NCF1 mutation db
• NCF2base - Human NCF2 mutation db

30
??????????????

• Neuromuscular diseases web site
• NCL - Neuronal Ceroid Lipofuscinoses mutation db
• OTCase - Human ornithine transcarbamylase
  (OTCase) website
• Cytochrome P450 alleles nomenclature
• p53 mutation db - University of Tokyo p53
  mutation db
• Germline p53 mutation db - University of Prague
  db of germline p53 mutations
• PAHdb - Human phenylalanine hydroxylase (PAH)
  mutation db

31
??????????????

• PAX6 mutation - Human PAX6 mutation db
• Prion - Prion and prion disease web site
• RAG1base - Human RAG1 mutation db
• RAG2base - Human RAG2 mutation db
• RB1base - Human retinoblastoma-associated protein
  (RB) mutation db
• RetNet - Retinal Information Network
• Retina International Scientific Newsletter -
  Information on Retinal genes, proteins and
  diseases

32
??????????????

• TSC - TSC (TSC1/TSC2) variation db
• TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS)
  db (Tuberin TSC2)
• TGDB - Tumor gene db
• VMD2 mutation - Human VMD2 mutation db
• vWF mutation - Human von Willebrand factor (vWF)
  mutation db
• WRN - Human WRN mutation db (Warner disease)
• WT1 mutation - Human WT1 mutation db
• X-ALD mutation - Human ABCD1 mutation db 

33
??????????

• Clusters of Orthologous Groups (COG) -
  Phylogenetic classification of proteins from 21
  complete genomes
• XREFdb - Cross-referencing of model organism
  genetics with mammalian phenotypes 
• TreeBASE - Relational db of phylogenetic
  information
• The Tree of life - Collection of WWW pages on
  phylogeny and biodiversity of organisms

34
?????

• DPD - DNA Patent db
• Ag Patents - Agricultural Biotechnology patents
  from the USDA
• USPTO patent db - USA Patent and Trademark Office
  patent db
• Esp_at_cenet - Patent information database from the
  European Patent Office (worldwide coverage)
• The Delphion Intellectual Property Network (IPN) 
  for searching, viewing, and analyzing patent
  documents.

35
??????????

• BioCatalog - The BioCatalog at EBI
• Yellow BAGI - Bio Access Guide to the Internet at
  Houston University
• Software library from Genamics.com
• DBCAT - Databases catalog at INFOBIOGEN
• MBDL - Molecular Biology Database List
• Amos' WWW links page 
• Nucleic Acids Research database issue

36
Human

• CEPH-genotype database
• CEPH home page - a research laboratory which
  constructs maps of the human genome
• GeneMap'99 - A Gene Map of the Human Genome
  (NCBI)
• OMIM - Online Mendelian Inheritance in Man
• GENATLAS - Human genes atlas
• GeneClinics - Medical genetics knowledge base
• GDB - Human genes and genomic maps
• GeneCards - Db integrating information on human
  genes

37
Human

• UDB - Unified db for Human genome mapping
• Ensembl - Human genome annotations site
• UCSC human genome working draft
• TIGR HGI - TIGR Human Gene Index
• Human BAC Ends Database - Non-redundant human BAC
  end sequences
• Hs UniGene - Human transcripts in GenBank (EST
  clusters)
• STACK - Sequence Tag Alignment and Consensus
  Knowledgebase (Db of consensus human ESTs)

38
Human

• Allgenes.org - Human predicted gene index/catalog
  
• GenLink - Human genetics resource
• GENOTK - Human cDNA db
• HUGE - Human Unidentified Gene-Encoded large
  proteins cDNA (KIAA...)
• CGAP - Cancer Genome Anatomy Project
• SCDb - Stem cell db

39
Human

• HuGeMap - Human genome genetic and physical map
  data
• G3-RH - Stanford G3 and TNG radiation hybrid maps
  
• GB4-RH - Genebridge4 (GB4) human radiation hybrid
  maps
• Radiation Hybrid Database - Radiation hybrid map
  data

40
Human chromosome 18

• Chr1 - Human chromosome 1 at Rockefeller
  University Mirror at EBI
• Chr3 - Human chromosome 3 db at the University of
  Texas Health Science Center
• Chr7 - Human chromosome 7 db at Ontario's
  Hospital for Sick Children
• Chr8 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 8

41
Human chromosome911

• Chr9 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 9
• Chr9 - Human chromosome 9 db
• Chr10 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 10
• GTC Chr10 data - Human chromosome 10 data from
  Genome Therapeutics Corporation
• Chr11 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 11
• 11DB - Human chromosome 11 db at Imperial College
  (U.K.)

42
Human chromosome1216

• Chr12 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 12
• Chr13 - Human chromosome 13 db at Columbia
• Chr14 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 14
• Chr15 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 15
• Chr15 UBC - Human chromosome 15 WWW page at UBC
• Chr16 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 16

43
Human chromosome1619

• Chr16 LANL - Human chromosome 16 db at Los Alamos
  National Laboratory
• Chr16 TIGR - Human chromosome 16 db at TIGR
• Chr17 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 17
• Chr18 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 18
• Chr18 - Human chromosome 18 at Boston Children's
  Hospital
• Chr19 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 19

44
Human chromosome2022

• Chr20 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 20
• Chr21 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 21
• Chr21 at RIKEN - Human chromosome 21 genome site
  at RIKEN (Japan)
• Chr21 at ERI - Human chromosome 21 genomic
  sequence db from the Eleanor Roosevelt Institute
• Chr22 SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome 22
• Chr22 at Sanger - Sanger Center chromosome 22
  project
• Chr22 at HGC - Human genome center for chromosome
  22

45
Human chromosomeXY

• ChrX SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome X
• IXDB - Integrated X chromosome db
• ChrY SWISS-PROT list - Links to SWISS-PROT
  entries from human chromosome Y
• DRESH - Human cDNA clones homologous to
  Drosophila mutant genes

46
Vertebrates

• OMIA - Online Mendelian Inheritance in Animals
• MGI - Mouse Genome Informatics (includes Mouse
  Genome Database (MGD))Mirrors in Australia UK
  Japan
• TIGR MGI - TIGR Mouse Gene Index
• Mm UniGene - Mouse transcripts in GenBank (EST
  clusters)
• RatMAP - Rat genome db
• TIGR RGI - TIGR Rat Gene Index
• Rn Unigene - Rat transcripts in GenBank (EST
  clusters)

47
Vertebrates

• BovBASE - Bovine genome db (in UK)
• BOVMAP - Bovine genome db (in France)
• Ark-Cat - Cat genome db
• HorseBASE - Horse genome db
• DGP - Dog Genome Project
• PiGBASE - Pig genome db
• SheepBASE - Sheep genome db (also known as
  SheepMap) Mirror in UK
• MIS - Mendelian Inheritance in Sheep
• ChickGBASE - Chicken genome db

48
Vertebrates

• Fugu - HGMP Resource Centre Fugu Project (Fugu
  rubripes)
• Medakafish - Mekada fish (Oryzias latipes) server
  
• Ark-Tilapia - Tilapia mossambica genome db
• The fish net - Zebrafish server
• FishBase - Global information system on fishes

49
Mitochondrion and chloroplast

• GOBASE - Organelle Genome Database
• MitoDat - Mendelian Inheritance and the
  Mitochondrion db (mitochondrial nuclear genes)
• MITOMAP - Human mitochondrial genome db
• MmtDB - Metazoa mitochondrial DNA variants db
• MitBASE - Integrated mitochondrial DNA db
• MitBASE-Pilot - Db of S.cerevisiae nuclear genes
  involved in mitochondrial biogenesis
• HvrBase - Primates mtDNA control region sequences
  compilation

50
Mitochondrion and chloroplast

• MOUSE - Mitochondrial and Other Useful SEquences
  (human and apes mit. DNA db)
• MITOP - Mitochondrial proteins, genes and
  diseases
• AMmtDB - Metazoan mitochondrial DNA sequences

51
Insects

• Drosophila SWISS-PROT list - Links to Drosophila
  SWISS-PROT entries
• FlyBase - Drosophila genetic and molecular db
  Mirror at EBI
• FlyView - Drosophila image db
• GIFTS - Gene Interactions in the Fly Trans-World
  Server
• FlyNets - Db of molecular interactions in
  Drosophila melanogaster
• SOS-DGBD - Db of Drosophila DNA sequences
  annotated with regulatory binding sites
• Mosquito Genomics

52
Invertebrates

• WormBase - C.elegans db Mirror at Sanger
• C.elegans WWW server - at University of Texas
  Southwestern
• ACeDb - Caenorhabditis elegans db
• C.elegans Mitochondrial Directory - Data on
  C.elegans genes for mitochondrial proteins
• C.elegans EST - C.elegans EST db from Japan (Yuji
  Kohara's group)
• C.elegans SWISS-PROT list - Links to C.elegans
  SWISS-PROT entries
• WormPep - C.elegans proteins db
• WormPD - C.elegans protein db

53
Invertebrates

• Dictystelium Genome Sequencing project at BCM
• Dictyostelium discoideum genome project at IENA
• DictyDb - Dictyostelium discoideum db
• Dicty_cDB - Dictyostelium discoideum cDNA project
  
• Cone shells Web site
• Parasite genomes db and resources
• Parasite genomes WWW site
• PlasmoDB - P.falciparum genome db

54
Invertebrates

• Malaria - WHO - Malaria db (from WHO) (??nue)
• P.falciparum Sanger - P.falciparum genome project
  at Sanger
• PFDB - Plasmodium falciparum Genome db (???)
• P.falciparum - Plasmodium falciparum Gene
  Sequence Tag project

55
Invertebrates

• MAD - Malaria Antigen db
• Malaria parasite metabolic pathways
• LGN - Leishmania Genome Network
• Trypanosoma brucei genome project
• Trypanosoma cruzi genome project
• kDNA - Kinetoplast Minicircle Sequence db

56
Plants

• NAL - AGIS - Access to many plant genome
  databases at the National Agricultural Library
• Demeter's genomes - Access to many plant genome
  databases at the USDA-ARS
• Mendel - Plant gene nomenclature database from
  CPGN
• AtDB - Arabidopsis thaliana genome database
• TAIR - The Arabidopsis Information Resource
• MATDB - MIPS Arabidopsis thaliana db
• TIGR AtGI - TIGR Arabidopsis thaliana Gene Index
• AGR - Arabidopsis Genome Resource 

57
Plants

• BeanGenes - Beans genome db (?)
• BeanRef - Beans genome db and other resources
• ChlamyDB - Chlamydomonas reinhardtii genome
  db??(??????????????????)
• CropNet - Genome mapping in crop plants
• CottonDB - Cotton genome db (??)
• MaizeDb - Maize genome db (??)
• INRA Maize - INRA Maize genome db
• ZmDB - Maize genome database
• Pisum sativum (pea) web site(??)

58
Plants-Rice

• RGP - Rice Genome Research Program
• RiceGenes
• Rice-research.org - Monsanto rice genome site
• TIGR OsGI - TIGR Rice Gene Index
• TIGR GmGI - TIGR Soybean Gene Index
• Snapdragon (A.majus) web site
• SorghumDB - Sorghum genome db (??)
• SoyBase - Soybean genome db (??)

59
Plants

• SoyBase metabolic db - Metabolic subset of the
  soybean genome db
• TIGR LeGI - TIGR Tomato Gene Index
• Dendrome - Forest trees genome db

60
Fungi

• FGSC - Fungal Genetics Stock Center
• FGR - Fungal Genome Resource
• Yeast SWISS-PROT list - Links to S.cerevisiae WWW
  sites and to SWISS-PROT entries
• SGD - Saccharomyces genome db
• YPD - Yeast protein db
• MitBASE-Pilot - Db of S.cerevisiae nuclear genes
  involved in mitochondrial biogenesis
• Yeast snoRNA - Yeast small nucleolar RNAs db
• YTPdb - Yeast Transport Protein db
• PathCalling - Yeast protein-protein interaction
  db

61
Fungi

• Aspergillus web site
• C.albicans SWISS-PROT list - Links to C.albicans
  WWW sites and to SWISS-PROT entries
• Candida albicans - Candida albicans server at the
  Univ. of Minnesota
• NGP - Neurospora crassa genome project
• PC - Pneumocystis carinii genome project
• S.pombe SWISS-PROT list - Links to S.pombe WWW
  sites and to SWISS-PROT entries
• S.pombe NIH - Fission yeast (S.pombe) server at
  the NIH

62
Fungi

• Phycomyces Web site - Resource site for
  scientists working on Phycomyces
• EMGlib - Completely sequenced bacterial genomes
  and the yeast genome

63
Bacteria

• ICB - Identification and Classification of
  Bacteria
• WDCM - World Data Center for Microorganisms
• List of Bacterial Names with Standing in
  Nomenclature
• MDB - TIGR Microbial db
• lt Agt- Genome information broker for Microbial
  genomes
• HOBACGEN - Homologous Bacterial Genes db
• Comparison of the transport capabilities of
  bacterial genomes - from Ian Paulsen
• BPGD - Bacterial polysaccharide gene db(???????)

64
Bacteria

• Bacterial quorum sensing
• MicrobeWorld - Educational site on microbes
• E.coli SWISS-PROT list - Links to E.coli WWW
  sites and to SWISS-PROT entries
• EcoWeb / EcoGene - Very comprehensive E.coli db
• ECCE - E.coli Cell Envelope Protein Data
  Collection
• ECDC - E.coli db collection
• EcoCyc - Encyclopedia of E.coli genes and
  metabolism

65
Bacteria

• GenProtEC - E.coli genome and proteome db
• Colibri - E.coli genome db from Pasteur Insitute
• ECGC - E.coli Genome Center at Wisconsin
  University
• DDBJ E.coli - E.coli home page at DDBJ
• B.subtilis SWISS-PROT list - Links to B.subtilis
  WWW sites and to SWISS-PROT entries
• SubtiList - Bacillus subtilis genomic db
• NRSub - Bacillus subtilis non-redundant db
  Mirror in Japan

66
Bacteria

• Micado - Microbial advanced db (B.subtilis
  E.coli) (previously known as MadBase)
• BSORF - Japanese server on B.subtilis
• A.actinomycetemcomitans - Actinobacillus
  actinomycetemcomitans strain HK1651 genome
  project
• B.stearothermophilus - Bacillus
  stearothermophilus strain 10 genome project
• B.pertussis - Bordetella pertussis genome WWW
  site(????????)
• BbDB - TIGR Borrelia burgdorferi genome db
• ??????

67
Bacteria

• iBGD - Integrated Buchnera genome db
• B.cepacia - Burkholderia cepacia genome project
• Chlamydia - Chlamydia pneumoniae and trachomatis
  (???)
• C.muridarum - TIGR Chlamydia muridarum strain
  MoPn genome db
• C.pneumoniae AR39 - TIGR Chlamydia pneumoniae
  strain AR39 genome db
• C.pneumoniae J138 - Japanese Chlamydia pneumoniae
  strain J138 genome db

68
Bacteria

• E.faecium - Enterococcus faecium genome
  project(????)
• C.acetobutylicum - GTC Clostridium acetobutylicum
  strain ATCC 824 data
• C.jejuni - Campylobacter jejuni strain NCTC 11168
  genome WWW site
• C.hutchinsonii - Cytophaga hutchinsonii genome
  project
• DrDB - TIGR Deinococcus radiodurans strain R1
  genome db
• D.hafniense - Desulfitobacterium hafniense genome
  project (????)

69
Bacteria

• F.acidarmanus - Ferroplasma acidarmanus genome
  project
• F.tularensis - Francisella tularensis genome WWW
  site
• H.influenzae SWISS-PROT list - Links to
  H.influenzae WWW sites and to SWISS-PROT entries
• HiDB - TIGR H.influenzae genome db
• HIDC - H.influenzae db collection
• H.pylori SWISS-PROT list - Links to H.pylori WWW
  sites and to SWISS-PROT entries

70
Bacteria

• HpDB - TIGR Helicobacter pylori strain 26695
  genome db
• H.pylori J99 - Astra Helicobacter pylori strain
  J99 genome db
• PyloriGene - Helicobacter pylori genmoic db
• MC-1 - Magnetococcus MC-1 genome project
• M.magnetotacticum - Magnetospirillum
  magnetotacticum genome project
• MycDB - Mycobacterium db
• M.leprae at GTC - GTC Mycobacterium leprae data
• M.leprae at Sanger - Sanger Centre M.leprae
  genome project
• TubercuList - Mycobacterium tuberculosis strain
  H37Rv genome db
• MtDB - TIGR Mycobacterium tuberculosis strain
  Oshkosh genome db
• M.tuberculosis at GTC - GTC Mycobacterium
  tuberculosis data

71
Bacteria

• M.tuberculosis at Sanger - Sanger Centre
  M.tuberculosis H37Rv genome project
• M.tuberculosis secreted proteins
• M.tuberculosis structural genomics consortium
• M.genitalium SWISS-PROT list - Links to
  M.genitalium SWISS-PROT entries
• MgDB - TIGR Mycoplasma genitalium genome db
• M.pneumoniae - Mycoplasma pneumoniae genome
  project

72
Bacteria

• N.meningitidis A - Sanger Centre Neisseria
  meningitidis serogroup A strain Z2491 genome
  project
• N.meningitidis B - TIGR Neisseria meningitidis
  serogroup B strain MC58 genome db
• N.gonorrhoeae - Neisseria gonorrhoeae strain FA
  1090 genome project
• N.europaea - Nitrosomonas europaea genome
  project(??????)
• N.punctiforme - Nostoc punctiforme genome project

73
Bacteria

• P.marinus - Prochlorococcus marinus genome
  project
• P.aeruginosa project - Pseudomonas aeruginosa
  genome project
• P.aeruginosa db - Pseudomonas aeruginosa genome
  db
• P.fluorescens - Pseudomonas fluorescens genome
  project
• Rhizobium pNGR234a SWISS-PROT list - Links to
  Rhizobium plasmid pNGR234a SWISS-PROT entries
• Rhizobium pNGR234a analysis
• RsGDB - Rhodobacter sphaeroides genome db
• R.sphaeroides - Rhodobacter sphaeroides genome
  project

74
Bacteria

• R.palustris - Rhodopseudomonas palustris genome
  project
• R.prowazekii SWISS-PROT list - Links to
  prowazekii SWISS-PROT entries
• R.prowazekii - Rickettsia prowazekii strain
  Madrid E genome project
• S.typhimurium SWISS-PROT list - Links to
  S.typhimurium SWISS-PROT entries
• RhizoBase - Sinorhizobium loti genome project
• S.meliloti - Sinorhizobium meliloti genome
  project

75
Bacteria

• S.aureus - Staphylococcus aureus strain NCTC 8325
  genome project (????)
• S.mutans - Streptococcus mutans strain UAB159
  genome project (???)
• S.pyogenes - Streptococcus pyogenes strain M1
  genome project
• S.aromaticivorans - Sphingomonas aromaticivorans
  genome project
• PCC 6803 SWISS-PROT list - Links to Synechocystis
  PCC 6803 SWISS-PROT entries
• CyanoBase - Synechocystis PCC 6803 db

76
Bacteria

• Synechococcus - Marine synechococcus genome
  project
• T.fusca - Thermomonospora fusca genome project
• TmDB - TIGR Thermotoga maritima genome db
• TpDB - TIGR Treponema pallidum genome db
• T.erythraeum - Trichodesmium erythraeum genome
  project
• U.urealyticum - Ureaplasma urealyticum genome WWW
  site
• VcDB - TIGR Vibrio cholerae genome db
• X.citri - Xanthomonas cititi genome WWW site

77
Bacteria

• X.fastidiosa - Xylella fastidiosa genome WWW site
  
• X.fastidiosa at DOE - DOE Xylella fastidiosa
  genome project
• Y.pestis - Yersinia pestis genome WWW site
• Phytophthora Genome Initiative Database -
  Oomycete sequences and genetic maps

78
Archaea

• A.pernix - Aeropyrum pernix K1 genome db
• AfDB - TIGR Archaeoglobus fulgidus genome db
• Halobacterium NRC-1 - Halobacterium strain NRC-1
  genome project
• M.thermoautotrophicum - Methanobacterium
  thermoautotrophicum genome db
• M.jannaschii SWISS-PROT list - Links to
  M.jannaschii SWISS-PROT entries
• MjDB - TIGR Methanococcus jannaschii genome db
• MjFdb - Methanococcus jannaschii functions db

79
Archaea

• M.barkeri - Methanosarcina barkeri genome project
  
• P.abyssi - Pyrococcus abyssi genome project and
  db
• P.horikoshii - Pyrococcus horikoshii OT3 db
• SGP - Sulfolobus solfataricus strain P2 genome
  project
• T.acidophilum - Thermoplasma acidophilum genome
  project

80
Viruses

• All the virology on the WWW - links to virology
  WWW servers by David M. Sander
• ICTVdB - Universal virus taxonomy db
• AVIS - Animal Virus Information System
• Plants Viruses Online - Information on plant
  viruses
• HIV - HIV and related species db
• HPV - Human papillomaviruses db
• Influenza sequence db
• Picornavirus - Picornavirus home page and access
  to db
• Tobamoviruses

81

• The End!