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012 Pre-prepare KEGG mapping

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020 Take slice. 025 Primary content checks: -Is everything intended included? ... Fix web site/code. 013 -Update ... Fix web code. nnn - identifier for a step. ... – PowerPoint PPT presentation

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Tags: kegg | fix | mapping | pre | prepare | slice

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Title: 012 Pre-prepare KEGG mapping


1
010 Set _doRelease
020 Take slice
011 Prepare orthopairs
025 Primary content checks -Is everything
intended included? -Are Events authored,
reviewed, edited slots filled? -Are compartments
consistent? -Are required attributes filled? -Are
reactions balanced? -Is dateReleased slot of
frontpage items filled? -Do reactions have
coordinates for sky?
Fix data in gk_central
Fix web code
Display problem?
Content problem?
035 Assign stable identifiers
040 Convert db to MyISAM
Reactome release in 18 easy steps
050 Do computational predictions
Fix prediction code
060 Create ReactionCoordinates for predicted
reactions
070 Check computational predictions
Fix web code
Primary data problem?
Display problem?
Orthology problem?
012 Pre-prepare KEGG mapping
080 -Add links to external resources -Create
skypainter db -Create and adjust
PathwayCoordinates
071 Create stats
Fix code/ Adjust coordinates
090 Check links skypainter
Display problem?
Primary data problem?
Orthology problem?
013 -Update news file -Update RSS file
100 Create data code dumps
105 Update release name
  • nnn - identifier for a step. The order in which
    the steps have to be performed is indicated by
    connectors (and not necessarily by the numeric
    value of the identifier). Detailed description of
    each step can be found in the following text.
  • Each numbered step can be completed only if all
    the numbered steps leading to this step have been
    successfully completed.
  • Individual operation listed in a step can be
    performed in parallel.
  • Possible but as yet not existing optimisation
    step which would speed up the following step.

110 Check website
Display problem?
Fix web site/code
130 Switch www.reactome.org to new release
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