My Favorite Pathway: Glycolysis/Gluconeogenesis - PowerPoint PPT Presentation

About This Presentation
Title:

My Favorite Pathway: Glycolysis/Gluconeogenesis

Description:

My Favorite Pathway: Glycolysis/Gluconeogenesis. Pallavi Penumetcha. 11/25/08. Glycolysis (RAST) ... Example of How to Investigate One Enzyme. Enzyme 3.1.3.11 ... – PowerPoint PPT presentation

Number of Views:154
Avg rating:3.0/5.0
Slides: 9
Provided by: PAL132
Category:

less

Transcript and Presenter's Notes

Title: My Favorite Pathway: Glycolysis/Gluconeogenesis


1
My Favorite PathwayGlycolysis/Gluconeogenesis
  • Pallavi Penumetcha
  • 11/25/08

2
Glycolysis (RAST)
3
Glycolysis Pathway Condensed
4
Example of How to Investigate One Enzyme
Enzyme 3.1.3.11 was not highlighted in the SEED
pathway
CDD Results
5
Pfam Results
NCBI Results
6
Enzymes not called by RAST annotation
EC Number and Name Other Databases? Notes
3.1.3.11 (fructose bisphosphatase) Yes SEED Confirmed as fructose bisphosphotase in CDD, Pfam and NCBI
2.7.1.11 (6-phosphofructokinase) Yes SEED and Manatee 5 calls between 2 databases (2 in SEED and 3 in Manatee) 2 sequences in SEED match with two in Manatee?call different EC numbers -SEED 2.7.1.11 -Manatee 2.7.1.56 (1-phosphofructokinase) 1 sequence different in Manatee 2 sequence match same results in CDD Sequence in Manatee has the superfamily related to phosphofructokinases
1.2.1.12 (glyceraldehyde-3-phosphate dehydrogenase, phosphorylating) Yes All three All three have same protein sequence SEED calls the EC number 1.2.1.59 (glyceraldehyde-3-phosphate dehydrogenase NADP, phosphorylating) Shows that the different databases have different criteria for calling a protein
7
Fructose and Mannose Metabolism
8
Pentose Phosphate Pathway
Write a Comment
User Comments (0)
About PowerShow.com