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The myGrid project aims to provide middleware layers that make the Information ... Greenwood, Ananth Krishna, Xiaojian Liu, Darren Marvin, Karon Mee, Simon Miles, ...
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AMBIT. Determine whether coding SNP. affects the active site of the protein ... Select Medline ids from the EMBL record and do some text extraction using AMBIT. ...
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Globus, Sun Grid Engine, Condor, DS (Jini, Corba) SOAP, WSDL, UDDI, DAML OIL, OWL, RDF(S) ... Globus/SRB/Condor. Consortium. Expertise. View propagation, ...
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Comb-e-Chem. Workflow, (LabBooks) SCEC (USA) Ontologies and Service ... Provenance (primitive form) Ontology-based service discovery. Simple Web Portal ...
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Improving quality of both experiments and data ... High Level Interaction Layer. Semantic-based interaction Agents API communication protocol ...
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A myGrid Project Tutorial (3) Dr Mark Greenwood University of Manchester With considerable help from Justin Ferris, Peter Li, Phil Lord, Chris Wroe and the rest of ...
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a computer science pilot project working in the field of bioinformatics ... Taverna/Freefluo/MIR interface caters for expert user ...
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grid= grid1. final= collect. task: init= init. grid= grid2. Factoring with MyGrid. init ... grid1. java Fat 3 18655 34789789798 output-$TASK. grid2 ...
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user id available for provenance purposes ('who said/created/ran this, and when? ... WS-Security interceptor. Only certificates, not username/password ...
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open world of services. open to wider eScience context. open to user feedback ... DE PROBABLE UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE ...
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Web Service & Grid communication fabric. AMBIT. Text Extraction Service. Provenance mgt ... Distributed Query Processor. Bioinformaticians. Tool Providers ...
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Provenance in myGrid and beyond
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Service discovery is a difficult task in large scale, open distributed systems ... S John Dickman, Claudia di Napoli, Richard Lawley, Ananth Krishna, Victor Tan ...
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AMBIT. Interpro. Emboss Eprimer application. in SoapLab. Selection of ... AMBIT. Determine whether coding SNP. affects the active site of the protein ...
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All resources are identified by LSIDs. URIs are LSIDs: valid RDF ... Resolvers map LSIDs to data or metadata. Resolvers need ... LSID allocation services? ...
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myGrid Steering Committee Meeting. myGrid Team Leaders. Sheffield University ... Mina bogged down in teaching (notification client, collaboration requirements) ...
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Short Term (Sept 2003) Harden Notification. More Management Information Queries ... allow distribution over multiple dbs. support interlinking of data across ...
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myGrid: Une Vision globale
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is a generic service capable of querying over an arbitrary ... WS should define a method for each query; - Compile, deploy and register the WS to the registry ...
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Based on the myGrid Information Model. Stores user and provenance data ... Browses data elements via the mIR service interface. 9/6/09. myGrid Developers' Day ...
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Exploring Williams-Beuren Syndrome using myGrid. R.D. Stevens,a H.J. Tipney,b C.J. ... Outgoing personality, friendly nature, charming' ...
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User sends LSID ref and ... credentials are passed to a User Directory ... PEP decodes the response and either allows data/metadata to be returned to the ...
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1/20,000 live births, caused by unequal crossover (homologous ... Outgoing personality, friendly nature, charming' Williams-Beuren Syndrome Microdeletion ...
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Proxy observer in enactor, MIR, ... E-science events become part of information model ... multiple service instances with NS as e-science event bus'? ISMB ...
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If you are using either a modern version of Windows (Win2k or WinXP, with XP ... For windows users, Taverna can be unzipped and used, for linux you will also ...
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Observe and describe phenomena and study existing knowledge ... chromosome 20q13.1-13.2 Contains two putative novel genes, ESTs, STSs and GSSs, ...
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12181 acatttctac caacagtgga tgaggttgtt ggtctatgtt ctcaccaaat ttggtgttgt 12241 ... chromosome 20q13.1-13.2 Contains two putative novel genes, ESTs, STSs and GSSs, ...
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The scientist's (Hannah's) problem. Chr 7 ~155 Mb ~1.5 Mb. 7q11.23. CTA-315H11. CTB-51J22 ... 12181 acatttctac caacagtgga tgaggttgtt ggtctatgtt ctcaccaaat ...
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Discussion on possibly security measures. Stop gap sign on proposal and ... exposed (e.g. all read operations permitted, all write operations disallowed) ...
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Particular thanks to the other members of the Taverna ... Purple: Taylor-made services. Green: Emboss soaplab services. Yellow: Manchester soaplab services ...
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Taverna and myGrid. A solution for confusion intensive computing? Tom ... Outgoing personality, friendly nature, charming' Chr 7 ~155 Mb ~1.5 Mb. 7q11.23. C-cen ...
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Saved time, increased productivity. But you still require humans! Sharing ... Passing data by value breaks Web services. Streaming (Inferno) ...
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19747251 AC005089.3 831 Homo sapiens BAC clone CTA-315H11 from 7, complete sequence ... chromosome 20q13.1-13.2 Contains two putative novel genes, ESTs, STSs and GSSs, ...
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Carp Gene expression analysis. TALISMAN. annotation workbench. Wor. kbench. Bio Services ... Workbench for gene expression in Carp & Graves disease. Developers ...
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Knowledge-based Middleware for. BioGrid services from the myGrid Project. ... Base services that tools that will constitute the experiments ...
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MyGrid: A UserCentric Approach for Grid Computing
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GRIMOIRES / WebDAV directory. Tied to BioMOBY Central. Semantic discovery ... GRIMOIRE / WebDAV directory. Tie into BioMOBY central ...
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specialised services such as AMBIT text extraction. Experiment life cycle. Executing experiments ... AMBIT. Text Extraction Service. Provenance mgt ...
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2.40 3.00 sharing my workflows. Taverna training day in Sheffield. An Introduction to Taverna Workflows ... Steve Kemp. Paul Fisher. Trypanosomiasis Study ...
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Knowledge-based Middleware for. BioGrid services from the ... Apr 02. IF-1 Notts. Nov 01. Kick-off. Future Phases of development. ISMB 2004 IS DEAD IMPORTANT ...
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Hound. Processor. Bio. MART. SCUFL. Application data flow ... To store knowledge provenance. Taverna workflow workbench & plugins. Ensure automated recording ...
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The myGrid project: towards a 'semantic grid' for ... Ontology editing: OilEd. http://oiled.man.ac.uk/ Consistency check if knowledge is meaningful ...
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Grave's Disease caused by the stimulation of the thyrotrophin receptor by ... What is the molecular basis for this autoimmune response? Pituitary. Gland ...
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GROWL - Sparrow - Concrete Abstract Syntax - DIG ... GROWL, Sparrow, ... etc conversion tools: what do projects have in terms of such ...
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Experiment Design to test Hypotheses Find restriction sites and design primers ... Semantic, syntactic and format typing of data in workflow ...
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Gathering the Requirements for myGrid, a Grid-Based Bioinformatics Platform ... University of Newcastle upon Tyne, 2Department of Computer Science, University ...
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The myGrid project aims to provide middleware layers that make ... Pituitary. Gland. Thyroid Hormones Released. Thyroid. Cell. TSH Receptor. TSH -ve feedback ...
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Coordinate units of work and the flow of documents according to ... Ingest. Early adopters. Pioneers. Pioneers. Conservatives. Early adopters. Pioneers. myGrid ...
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Images are streamed for efficient access. ... Imaging and Pathology Project. DOMAIN WORKSPACE 2. Integrative Cancer Research. MyGrid ...
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Provenance in Taverna is stored in RDF and OWL. Workflow reuse. Stuart Owen. myGrid ... Provenance. Systems Configuration. Policy representation and ...
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Globus Toolkit, GAT. myGrid, Taverna. Drag&Drop. Globus ... Globus Toolkit, GAT. Conclusions: There is no solution that fulfills all ViroLab requirements ...
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MUSE, cross-genre entitiy finder. HSL, Health-and-safety IE ... UK and EU projects inc.MyGrid, CLEF, DotKom, AMITIES, Cub Reporter, EMILLE, Poesia...
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A part of the EPSRC myGrid project. Collectively aimed at facilitating standard ... Assume an open world of services, most of which we do not control directly. ...
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Discovery of resources and tools, staging of operations, sharing of results ... Bioinformatics demonstrator (on cold carp) Developers. myGrid-in-a-Box developers kit ...
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CCGrid 2003, Tokyo, Japan. GridFlow: Workflow Management for Grid ... Condor DAGMan, UNICORE, MyGrid, GEMSS, GridLab, BioOpera, USC Grid failure handling, ...
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The entire genetic identity of an individual that does not show any outward ... Many thanks to: including: Joanne Pennock, EPSRC, OMII, myGrid, and lots more people ...
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