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MGED Ontology usage PowerPoint PPT Presentation
MGED Ontology usage - Provide usage of the ontology and examples. Lot's of links to ontology resources on the web ... Example: Your BioMaterial source had a Disease 'foobar' ...
Provide usage of the ontology and examples. Lot's of links to ontology resources on the web ... Example: Your BioMaterial source had a Disease 'foobar' ...
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MGED Ontology Workshop PowerPoint PPT Presentation
MGED Ontology Workshop - Continue model discussions toward MAGE v2. Document Model and changes as ... an issue about how we handle deprecated instances and classes; this will also be ...
Continue model discussions toward MAGE v2. Document Model and changes as ... an issue about how we handle deprecated instances and classes; this will also be ...
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The MGED Ontology Workshop PowerPoint PPT Presentation
The MGED Ontology Workshop - Ontology concepts derived from the MIAME guidelines/MAGE-OM ... A Functional Genomics Object Model (FGE-OM) ... ideas from SysBio-OM (Xirasgur et al. ...
Ontology concepts derived from the MIAME guidelines/MAGE-OM ... A Functional Genomics Object Model (FGE-OM) ... ideas from SysBio-OM (Xirasgur et al. ...
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MGED Ontology PowerPoint PPT Presentation
MGED Ontology - Core ontology does not cover all of MAGE or contain all MAGE associations. ... When Ontology needed but no direct association, used describable (if describable) ...
Core ontology does not cover all of MAGE or contain all MAGE associations. ... When Ontology needed but no direct association, used describable (if describable) ...
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MGED Ontology: An Ontology of Biomaterial Descriptions for Microarrays PowerPoint PPT Presentation
MGED Ontology: An Ontology of Biomaterial Descriptions for Microarrays - Cell source: in-house bred mice (contact: norma.howells@itg.fzk. ... Use Mouse Anatomical Dictionary Stage 28 to pick experiments according to 'organism part' ...
Cell source: in-house bred mice (contact: norma.howells@itg.fzk. ... Use Mouse Anatomical Dictionary Stage 28 to pick experiments according to 'organism part' ...
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The MGED Ontology: Providing Descriptors for Microarray Data PowerPoint PPT Presentation
The MGED Ontology: Providing Descriptors for Microarray Data - Flame retardant structure. ExtendedOntology ... Array Design. Microarray. Gene expression. data matrix. normalization. integration ...
Flame retardant structure. ExtendedOntology ... Array Design. Microarray. Gene expression. data matrix. normalization. integration ...
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MGED Ontology MO PowerPoint PPT Presentation
MGED Ontology MO - MGED Ontology (MO) A resource for creation of MAGE-ML ... Not an ontology of life but of experiments. Parts are applicable to describing experiments in general ...
MGED Ontology (MO) A resource for creation of MAGE-ML ... Not an ontology of life but of experiments. Parts are applicable to describing experiments in general ...
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MGED Ontology MO PowerPoint PPT Presentation
MGED Ontology MO - MGED Ontology (MO) A resource for creation of MAGE-ML documents that are MIAME Compliant ... for translation between MAGE & MO. EBI ArrayExpress has plans for ...
MGED Ontology (MO) A resource for creation of MAGE-ML documents that are MIAME Compliant ... for translation between MAGE & MO. EBI ArrayExpress has plans for ...
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Ontologies Working Group Agenda MGED3 PowerPoint PPT Presentation
Ontologies Working Group Agenda MGED3 - Provide bridge to ontologies from other knowledge domains. What is an Ontology? ... Knowledge representation. Link to other domains (gene sequence annotation, ...
Provide bridge to ontologies from other knowledge domains. What is an Ontology? ... Knowledge representation. Link to other domains (gene sequence annotation, ...
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MGED Reporting Structure for Biological Investigations RSBI Working Group Outline Introduction PowerPoint PPT Presentation
MGED Reporting Structure for Biological Investigations RSBI Working Group Outline Introduction - Inter-omics, cross domains collaborations (Susanna Sansone, EBI) ... Calipers were employed to measure the length of the dorsal fin of a Stickleback. ...
Inter-omics, cross domains collaborations (Susanna Sansone, EBI) ... Calipers were employed to measure the length of the dorsal fin of a Stickleback. ...
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MGED Reporting Structure for Biological Investigations RSBI Working Group Outline Introduction PowerPoint PPT Presentation
MGED Reporting Structure for Biological Investigations RSBI Working Group Outline Introduction - ... Baunsgaard10, Glenn H Cantor11, Lois Lehman-McKeeman11, Mark Earll12, Svante ... Julian Griffin (Un of Cambridge) Chris Taylor (EBI and HUPO-PSI) ...
... Baunsgaard10, Glenn H Cantor11, Lois Lehman-McKeeman11, Mark Earll12, Svante ... Julian Griffin (Un of Cambridge) Chris Taylor (EBI and HUPO-PSI) ...
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Microarray Gene Expression Database MGED Ontology Working Group PowerPoint PPT Presentation
Microarray Gene Expression Database MGED Ontology Working Group - Cell source: in-house bred mice (contact: norma.howells@itg.fzk. ... Developmental stage: stage 28 (juvenile (young) mice) [ GXD 'Mouse Anatomical Dictionary' ...
Cell source: in-house bred mice (contact: norma.howells@itg.fzk. ... Developmental stage: stage 28 (juvenile (young) mice) [ GXD 'Mouse Anatomical Dictionary' ...
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Use of the MGED Ontology in environmental genomics and the maxd software PowerPoint PPT Presentation
Use of the MGED Ontology in environmental genomics and the maxd software - (open source, Java) Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood JA, ... Easy to install and maintain. Tools for biologists, tools for developers ...
(open source, Java) Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood JA, ... Easy to install and maintain. Tools for biologists, tools for developers ...
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OntologyEntry in MAGE PowerPoint PPT Presentation
OntologyEntry in MAGE - Relation of the MGED Ontology to MAGE. Brief review ... Thoracic Oncology. Tumor Bank. Cell Type. Epithelial Cell. Sample ID. AD145. Sex. Male. Organism Status ...
Relation of the MGED Ontology to MAGE. Brief review ... Thoracic Oncology. Tumor Bank. Cell Type. Epithelial Cell. Sample ID. AD145. Sex. Male. Organism Status ...
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Function Genomics Experiment FuGE Object Model in Plain English PowerPoint PPT Presentation
Function Genomics Experiment FuGE Object Model in Plain English - Example workflow (XPDL) Submit peptide search to multiple search algorithms ... See the presentation by Andy Jones for an example of this. Thanks. MGED. PSI ...
Example workflow (XPDL) Submit peptide search to multiple search algorithms ... See the presentation by Andy Jones for an example of this. Thanks. MGED. PSI ...
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How Philosophy of Science Can Help Biomedical Research PowerPoint PPT Presentation
How Philosophy of Science Can Help Biomedical Research - How to Do Biology across the Genome? ... sequence of X chromosome in baker's yeast ... the FDA need to assess the evidentiary value of enormous volumes of data ...
How to Do Biology across the Genome? ... sequence of X chromosome in baker's yeast ... the FDA need to assess the evidentiary value of enormous volumes of data ...
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Metadata For CARMEN PowerPoint PPT Presentation
Metadata For CARMEN - Metadata For CARMEN Phillip Lord and Frank Gibson
Metadata For CARMEN Phillip Lord and Frank Gibson
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Transcriptomics Community Introduction PowerPoint PPT Presentation
Transcriptomics Community Introduction - Maintaining MO - adding new terms, synonyms ... Specifically, Data Transformation and Investigation terms. Generally, remaining terms in MO ...
Maintaining MO - adding new terms, synonyms ... Specifically, Data Transformation and Investigation terms. Generally, remaining terms in MO ...
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Metabolomics%20Standards%20Workshop PowerPoint PPT Presentation
Metabolomics%20Standards%20Workshop - Material (biological and chemical, manipulation and transformation) ... Northwest Institute for Bio-Health Informatics, Un of Manchester. FreshwaterLife. CCLRC ...
Material (biological and chemical, manipulation and transformation) ... Northwest Institute for Bio-Health Informatics, Un of Manchester. FreshwaterLife. CCLRC ...
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Microarray Databases and MIAME (Minimum Information About a Microarray Experiment) PowerPoint PPT Presentation
Microarray Databases and MIAME (Minimum Information About a Microarray Experiment) - Review of microarray technology from data/database perspective ... 'An observed phenotype is specific for ... Rosetta Resolver (www.rosettabio.com) OpenSource ...
Review of microarray technology from data/database perspective ... 'An observed phenotype is specific for ... Rosetta Resolver (www.rosettabio.com) OpenSource ...
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Persistent Systems Pvt. Ltd. http://www.persistent.co.in PowerPoint PPT Presentation
Persistent Systems Pvt. Ltd. http://www.persistent.co.in - http://www.persistent.co.in. Gene Expression Analysis Using Microarrays. Dr Mushtaq Ahmed ... http://www.persistent.co.in. 2. Data Storage and Exchange ...
http://www.persistent.co.in. Gene Expression Analysis Using Microarrays. Dr Mushtaq Ahmed ... http://www.persistent.co.in. 2. Data Storage and Exchange ...
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G2G PowerPoint PPT Presentation
G2G - Frustrated biologist. DNA seq (Mac), Standen(Unix/Sun), EMBL (VAX/VMS) camel.tar.gz ... most effective? Efforts of both biologists and technoligists. Punchline ...
Frustrated biologist. DNA seq (Mac), Standen(Unix/Sun), EMBL (VAX/VMS) camel.tar.gz ... most effective? Efforts of both biologists and technoligists. Punchline ...
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Metabolomics Standards Workshop PowerPoint PPT Presentation
Metabolomics Standards Workshop - BUT provide terminology for describing functional genomics experiments ... Steve Oliver, University of Manchester. Suzi Lewis, University of California, Berkeley ...
BUT provide terminology for describing functional genomics experiments ... Steve Oliver, University of Manchester. Suzi Lewis, University of California, Berkeley ...
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Persistent Systems Pvt. Ltd. http://www.persistent.co.in PowerPoint PPT Presentation
Persistent Systems Pvt. Ltd. http://www.persistent.co.in - Gene Expression Analysis Using Microarrays Dr Mushtaq Ahmed Technology Incubation Division Persistent Systems Private Ltd Pune Topics Introduction Data Storage and ...
Gene Expression Analysis Using Microarrays Dr Mushtaq Ahmed Technology Incubation Division Persistent Systems Private Ltd Pune Topics Introduction Data Storage and ...
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Standards and Data Handling with Microarrays PowerPoint PPT Presentation
Standards and Data Handling with Microarrays - MAGE. Computer standard. A standard 'object model' for Microarrays ... MAGE-ML. A collection of these objects in an XML format ...
MAGE. Computer standard. A standard 'object model' for Microarrays ... MAGE-ML. A collection of these objects in an XML format ...
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Rendre les standards de description de biopuces accessibles: PowerPoint PPT Presentation
Rendre les standards de description de biopuces accessibles: - Reporter: l ment d pos sur une feature, qui a certaines caract ristiques, ... s quences composites entre les ' reporter ' vers une entit biologique. ...
Reporter: l ment d pos sur une feature, qui a certaines caract ristiques, ... s quences composites entre les ' reporter ' vers une entit biologique. ...
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Functional Genomics Ontology FuGO and Metabolomics Society Ontology group PowerPoint PPT Presentation
Functional Genomics Ontology FuGO and Metabolomics Society Ontology group - Steve Oliver, Manchester. Suzie Lewis, Berkeley. Role ... Oliver Fiehn (Un of California Davis, US) Helen Jenkins (University of Wales, Aberystwyth) ...
Steve Oliver, Manchester. Suzie Lewis, Berkeley. Role ... Oliver Fiehn (Un of California Davis, US) Helen Jenkins (University of Wales, Aberystwyth) ...
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RightField The Semantic Annotation of Experimental Data using Spreadsheets, PowerPoint PPT Presentation
RightField The Semantic Annotation of Experimental Data using Spreadsheets, - SOP Associating Experiments Investigation Study Assay Construction Validation SOP SOP http ... Oil and Gas industry Egyptology specimen ...
SOP Associating Experiments Investigation Study Assay Construction Validation SOP SOP http ... Oil and Gas industry Egyptology specimen ...
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RAD and MIAME Express Web Annotation Forms PowerPoint PPT Presentation
RAD and MIAME Express Web Annotation Forms - ... to collect all the necessary experimental info from the bench-investigator, need: ... queries can be generated using CV terms. Various fields ...
... to collect all the necessary experimental info from the bench-investigator, need: ... queries can be generated using CV terms. Various fields ...
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RAD and MIAME Express Web Annotation Forms PowerPoint PPT Presentation
RAD and MIAME Express Web Annotation Forms - ... mandatory descriptive information as previously described ... Study Design. Login. Biomaterials (samples, treatments) New. User Registration. Logical Flow ...
... mandatory descriptive information as previously described ... Study Design. Login. Biomaterials (samples, treatments) New. User Registration. Logical Flow ...
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Pax Terminologica PowerPoint PPT Presentation
Pax Terminologica - Pax Terminologica
Pax Terminologica
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Transcriptomics Community Introduction PowerPoint PPT Presentation
Transcriptomics Community Introduction - Re-factoring of MO - add unique identifiers for all terms, implementing a term ... 'Re-factoring' this resource through the development/contribution to OBI and ...
Re-factoring of MO - add unique identifiers for all terms, implementing a term ... 'Re-factoring' this resource through the development/contribution to OBI and ...
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national%20center%20for%20ontological%20research PowerPoint PPT Presentation
national%20center%20for%20ontological%20research - national center for ontological research
national center for ontological research
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Smooth Response Surface PowerPoint PPT Presentation
Smooth Response Surface - Patching the Puzzle of Genetic Network Grace S. Shieh Institute of Statistical Science, Academia Sinica gshieh@stat.sinica.edu.tw
Patching the Puzzle of Genetic Network Grace S. Shieh Institute of Statistical Science, Academia Sinica gshieh@stat.sinica.edu.tw
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Content, Format, and Standards in Genomics Scale Data PowerPoint PPT Presentation
Content, Format, and Standards in Genomics Scale Data - Why do we need a database for toxicogenomics. How is it envisioned that this ... sequence is required to resolve discrepancies through automated bioinformatics ...
Why do we need a database for toxicogenomics. How is it envisioned that this ... sequence is required to resolve discrepancies through automated bioinformatics ...
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BioRDF Breakout PowerPoint PPT Presentation
BioRDF Breakout - BioRDF Breakout Introduction Kei Cheung Mage-tab Michael Miller vOID Jun Zhao (remote) aTag Matthias Samwald (remote) Discussion All
BioRDF Breakout Introduction Kei Cheung Mage-tab Michael Miller vOID Jun Zhao (remote) aTag Matthias Samwald (remote) Discussion All
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Facilitating%20Standardization%20and%20Exchange%20of%20Array%20Design%20MAGEML2ADF PowerPoint PPT Presentation
Facilitating%20Standardization%20and%20Exchange%20of%20Array%20Design%20MAGEML2ADF - ADF creator module. Common tool module. File reader/writer. Configuration. Update. Logging ... ADF Data - MAGE object (MAGE-stk) MAGE object (MAGE-stk) - ADF Data ...
ADF creator module. Common tool module. File reader/writer. Configuration. Update. Logging ... ADF Data - MAGE object (MAGE-stk) MAGE object (MAGE-stk) - ADF Data ...
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Facilitating Standardization and Exchange of Array Design PowerPoint PPT Presentation
Facilitating Standardization and Exchange of Array Design - Checking lists (composite) CompositeSequence. File/Data structure checklist: ... Column order is correct (non mandatory) Data/file content checklist ...
Checking lists (composite) CompositeSequence. File/Data structure checklist: ... Column order is correct (non mandatory) Data/file content checklist ...
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Overview of the Functional Genomics Investigation Ontology FuGO and its Relationship to the Genomic PowerPoint PPT Presentation
Overview of the Functional Genomics Investigation Ontology FuGO and its Relationship to the Genomic - Jennifer Fostel, NIEHS-NCT. Tanya Gray, University of Manchester ... Norman Morrison, University of Manchester. Helen Parkinson, EBI. Philippe Rocca-Serra, EBI ...
Jennifer Fostel, NIEHS-NCT. Tanya Gray, University of Manchester ... Norman Morrison, University of Manchester. Helen Parkinson, EBI. Philippe Rocca-Serra, EBI ...
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ToxicogenOMICS Omics standards, resources and data at EBI PowerPoint PPT Presentation
ToxicogenOMICS Omics standards, resources and data at EBI - Jennifer Fostel, NIEHS-NCT. Environmental genomics WG. Norman Morrison, NERC Omics Data Centre. NCTR-FDA. ArrayTrack. TIS. ArrayExpress. CEBS ...
Jennifer Fostel, NIEHS-NCT. Environmental genomics WG. Norman Morrison, NERC Omics Data Centre. NCTR-FDA. ArrayTrack. TIS. ArrayExpress. CEBS ...
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MARS: Microarray analysis, retrieval, and storage system PowerPoint PPT Presentation
MARS: Microarray analysis, retrieval, and storage system - Study gene expression patterns on genomic scale. Produces ... Minimum Information about a ... Java library distribution. Software developers. Data ...
Study gene expression patterns on genomic scale. Produces ... Minimum Information about a ... Java library distribution. Software developers. Data ...
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Databases for Microarrays PowerPoint PPT Presentation
Databases for Microarrays - Databases for Microarrays Vidhya Jagannathan SIB, Lausanne Overview Microarray data in a nutshell Why databases? What data to represent? What is a database?
Databases for Microarrays Vidhya Jagannathan SIB, Lausanne Overview Microarray data in a nutshell Why databases? What data to represent? What is a database?
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A Design to Integrate Heterogeneous Microarray Databases PowerPoint PPT Presentation
A Design to Integrate Heterogeneous Microarray Databases - [Stekel, 2003] D. Stekel, Microarray Bioinformatics, Cambridge University Press, 2003. ... Bioinformatics (CSB'2004), August 2004. ...
[Stekel, 2003] D. Stekel, Microarray Bioinformatics, Cambridge University Press, 2003. ... Bioinformatics (CSB'2004), August 2004. ...
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FuGE: A framework for developing standards for functional genomics PowerPoint PPT Presentation
FuGE: A framework for developing standards for functional genomics - Andrew Jones. University of Manchester. Overview. Challenge of building ... Andrew Jones (Manchester) Michael Miller (Rosetta), Paul Spellman (Lawrence Berkley) ...
Andrew Jones. University of Manchester. Overview. Challenge of building ... Andrew Jones (Manchester) Michael Miller (Rosetta), Paul Spellman (Lawrence Berkley) ...
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Mouse Phenotype Ontology PowerPoint PPT Presentation
Mouse Phenotype Ontology - Mouse Phenotype Ontology. George Gkoutos. Phenotype Annotation ... Each individual ontology will provide an instance(s) (phenotypic descriptor) ...
Mouse Phenotype Ontology. George Gkoutos. Phenotype Annotation ... Each individual ontology will provide an instance(s) (phenotypic descriptor) ...
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OBI Tutorial Overview PowerPoint PPT Presentation
OBI Tutorial Overview - Ontology for Biomedical Investigations. OBI is about capturing all aspects of an investigation (study, experiment, etc.) OBI is part of a group that follows the same ...
Ontology for Biomedical Investigations. OBI is about capturing all aspects of an investigation (study, experiment, etc.) OBI is part of a group that follows the same ...
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A method to propagate permissions in biomedical data using a semantic web framework PowerPoint PPT Presentation
A method to propagate permissions in biomedical data using a semantic web framework - A method to propagate permissions in biomedical data using a semantic web framework Helena F. Deus and Jonas S. Almeida hdeus@mathbiol.org The University of Texas M ...
A method to propagate permissions in biomedical data using a semantic web framework Helena F. Deus and Jonas S. Almeida hdeus@mathbiol.org The University of Texas M ...
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Microarray and Gene Expression PowerPoint PPT Presentation
Microarray and Gene Expression - Robert Kincaid Agilent. Scott Markel LION. W.L. Marks Iobion ... Charles Troup Agilent. Joe White TIGR. John Yost National Cancer Institute (and many more) ...
Robert Kincaid Agilent. Scott Markel LION. W.L. Marks Iobion ... Charles Troup Agilent. Joe White TIGR. John Yost National Cancer Institute (and many more) ...
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Analysis of Gene Expression Anne R. Haake Rhys Price Jones PowerPoint PPT Presentation
Analysis of Gene Expression Anne R. Haake Rhys Price Jones - Analysis of Gene Expression Anne R. Haake Rhys Price Jones Gene Expression Analysis Connecting structural genomics to functional genomics How do we relate gene ...
Analysis of Gene Expression Anne R. Haake Rhys Price Jones Gene Expression Analysis Connecting structural genomics to functional genomics How do we relate gene ...
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The SOFG Anatomy Entry List SAEL PowerPoint PPT Presentation
The SOFG Anatomy Entry List SAEL - Content: organism to biological macromolecule. Serves as a reference ontology ... cheating' is-a overloading, need a top level of ontology philosophical qu. ...
Content: organism to biological macromolecule. Serves as a reference ontology ... cheating' is-a overloading, need a top level of ontology philosophical qu. ...
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2st ISA-TAB workshop Outcome/Summary (to date) PowerPoint PPT Presentation
2st ISA-TAB workshop Outcome/Summary (to date) - Title: PowerPoint Presentation Subject: Metabolomics Standards Workshop Author: Assunta-Susanna Sansone Last modified by: Sansone Created Date: 1/10/2002 1:28:12 PM
Title: PowerPoint Presentation Subject: Metabolomics Standards Workshop Author: Assunta-Susanna Sansone Last modified by: Sansone Created Date: 1/10/2002 1:28:12 PM
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Web Ontology Engineering and Applications: A Case Study in Traditional Chinese Medicine PowerPoint PPT Presentation
Web Ontology Engineering and Applications: A Case Study in Traditional Chinese Medicine - Web Ontology Engineering and Applications: A Case Study in Traditional Chinese Medicine Yuxin Mao CCNT Lab of Zhejiang University
Web Ontology Engineering and Applications: A Case Study in Traditional Chinese Medicine Yuxin Mao CCNT Lab of Zhejiang University
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ArrayExpress A public database for microarray based gene expression data http:www'ebi'ac'ukmicroarra PowerPoint PPT Presentation
ArrayExpress A public database for microarray based gene expression data http:www'ebi'ac'ukmicroarra - Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza ... Support on ontologies and CVs. Minimize free text, removal of synonyms. MIAME encouragement ...
Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza ... Support on ontologies and CVs. Minimize free text, removal of synonyms. MIAME encouragement ...
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Bioinformatics: Definitions, Challenges and Impact on Health Care Systems PowerPoint PPT Presentation
Bioinformatics: Definitions, Challenges and Impact on Health Care Systems - ... organ banks DOD requires DNA samples Bioterrorism and homeland security Identification of World Trade Center victims Privacy and security issues will remain with ...
... organ banks DOD requires DNA samples Bioterrorism and homeland security Identification of World Trade Center victims Privacy and security issues will remain with ...
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