321 Interpro PPTs View free & download

InterPro/prosite UCSC Genome Browser Exercise 3 PowerPoint PPT Presentation

InterPro/prosite UCSC Genome Browser Exercise 3 - InterPro/prosite UCSC Genome Browser Exercise 3 Turning information into knowledge The outcome of a sequencing project is masses of raw data The challenge is to turn ...

InterPro/prosite UCSC Genome Browser Exercise 3 Turning information into knowledge The outcome of a sequencing project is masses of raw data The challenge is to turn ...

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Sequence%20databases%20and%20retrieval%20systems PowerPoint PPT Presentation

Sequence%20databases%20and%20retrieval%20systems - High-quality annotations: Systematic control by a team of annotators. ... InterPro unifies PROSITE, PRINTS, Profile, ProDom, Pfam, SMART, and TIGRFam. InterPro ...

High-quality annotations: Systematic control by a team of annotators. ... InterPro unifies PROSITE, PRINTS, Profile, ProDom, Pfam, SMART, and TIGRFam. InterPro ...

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Databases for Protein Sequences PowerPoint PPT Presentation

Databases for Protein Sequences - http://www.ebi.ac.uk/interpro/ http://www.ebi.ac.uk/interpro ... amyloid protein levels in the brain increase, leading to aggregation of the proteins. ...

http://www.ebi.ac.uk/interpro/ http://www.ebi.ac.uk/interpro ... amyloid protein levels in the brain increase, leading to aggregation of the proteins. ...

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APAN e-Science Workshop e-Bio System for Bio-Knowledge Discovery PowerPoint PPT Presentation

APAN e-Science Workshop e-Bio System for Bio-Knowledge Discovery - New discoveries of biological knowledge are published in scientific journals ... motifs. Prosite, pfam, BLOCKS, InterPro. Keyword querying and motif detection ...

New discoveries of biological knowledge are published in scientific journals ... motifs. Prosite, pfam, BLOCKS, InterPro. Keyword querying and motif detection ...

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The Gene Ontology Project PowerPoint PPT Presentation

The Gene Ontology Project - Bregje Wertheim at the Centre for Evolutionary Genomics, Department of Biology, ... InterPro:IPR000015 Fimbrial biogenesis outer membrane usher protein GO: ...

Bregje Wertheim at the Centre for Evolutionary Genomics, Department of Biology, ... InterPro:IPR000015 Fimbrial biogenesis outer membrane usher protein GO: ...

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Outline - Aims of GOA project: To associate GO terms with All proteins in: - SWISS-PROT & TrEMBL - InterPro ... Daniel Barrell GOA File updates. David Binns QuickGO ...

Aims of GOA project: To associate GO terms with All proteins in: - SWISS-PROT & TrEMBL - InterPro ... Daniel Barrell GOA File updates. David Binns QuickGO ...

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A myGrid Project Tutorial PowerPoint PPT Presentation

A myGrid Project Tutorial - AMBIT. Interpro. Emboss Eprimer application. in SoapLab. Selection of ... AMBIT. Determine whether coding SNP. affects the active site of the protein ...

AMBIT. Interpro. Emboss Eprimer application. in SoapLab. Selection of ... AMBIT. Determine whether coding SNP. affects the active site of the protein ...

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Protein structure viewing: PowerPoint PPT Presentation

Protein structure viewing: - 2. Protein Classification: SCOP and CATH databases. 3. Families, Patterns, Motifs - InterPro. ... The SCOP database aims to classify. proteins according to structural ...

2. Protein Classification: SCOP and CATH databases. 3. Families, Patterns, Motifs - InterPro. ... The SCOP database aims to classify. proteins according to structural ...

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Remote Homology detection: A motif based approach PowerPoint PPT Presentation

Remote Homology detection: A motif based approach - A method based on presence of discrete sequence motifs for ... The Blocks database combines various databases such as pFAM, PRINTs, ProDom, DOMO and InterPro. ...

A method based on presence of discrete sequence motifs for ... The Blocks database combines various databases such as pFAM, PRINTs, ProDom, DOMO and InterPro. ...

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Proteomics: Analyzing proteins space PowerPoint PPT Presentation

Proteomics: Analyzing proteins space - By structure similarity : SCOP etc. By function : Albumin, RetNet, ... Validation against InterPro, SCOP etc. Lack of will to automatically reconstruct them! ...

By structure similarity : SCOP etc. By function : Albumin, RetNet, ... Validation against InterPro, SCOP etc. Lack of will to automatically reconstruct them! ...

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DIAMONDS MidTerm PowerPoint PPT Presentation

DIAMONDS MidTerm - Sequence high quality, large amount, constant flow, consistent ... PRINTS. ProDom. Integration: Data Fusion. InterPro 11,000 entries. Based on UniProt DB ...

Sequence high quality, large amount, constant flow, consistent ... PRINTS. ProDom. Integration: Data Fusion. InterPro 11,000 entries. Based on UniProt DB ...

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What have we covered PowerPoint PPT Presentation

What have we covered - TIGR: gene indices & TOGA. InterPro: protein domains & motifs ... and knowledge of the underlying biochemistry to provide a foundation for your strategy ...

TIGR: gene indices & TOGA. InterPro: protein domains & motifs ... and knowledge of the underlying biochemistry to provide a foundation for your strategy ...

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Value-adding, Access, and Use: Biological Databases as a Case Study - Value-adding, Access, and Use: Biological Databases as a Case Study

Value-adding, Access, and Use: Biological Databases as a Case Study

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MYCOBACTERIUM%20TUBERCULOSIS%20PROTEOME PowerPoint PPT Presentation

MYCOBACTERIUM%20TUBERCULOSIS%20PROTEOME - MYCOBACTERIUM TUBERCULOSIS PROTEOME M. tuberculosis- intracellular pathogen - TB prevalent in Africa and Asia - 1/3 population is infected - 8 million new cases per year

MYCOBACTERIUM TUBERCULOSIS PROTEOME M. tuberculosis- intracellular pathogen - TB prevalent in Africa and Asia - 1/3 population is infected - 8 million new cases per year

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BLOCKS - BLOCKS http://www.blocks.fhcrc.org/ Multiply aligned ungapped segments corresponding to most highly conserved regions of proteins- represented in profile

BLOCKS http://www.blocks.fhcrc.org/ Multiply aligned ungapped segments corresponding to most highly conserved regions of proteins- represented in profile

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Using%20The%20Gene%20Ontology: PowerPoint PPT Presentation

Using%20The%20Gene%20Ontology: - Fruit fly (Drosophila melanogaster) Budding yeast (Saccharomyces cerevisiae) ... Rat (Rattus norvegicus) Tsetse fly (G. morsitans) ...

Fruit fly (Drosophila melanogaster) Budding yeast (Saccharomyces cerevisiae) ... Rat (Rattus norvegicus) Tsetse fly (G. morsitans) ...

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Functional annotation PowerPoint PPT Presentation

Functional annotation - Functional annotation Datasources Konstantinos Mavrommatis Head of Omics group DOE-JGI Kmavrommatis@lbl.gov

Functional annotation Datasources Konstantinos Mavrommatis Head of Omics group DOE-JGI Kmavrommatis@lbl.gov

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Identification of Protein Domains PowerPoint PPT Presentation

Identification of Protein Domains - Let's untrivialize by allowing for gaps: insertions and deletions. Start off with the PSSM HMM. ... insertions: Introduce new states Ij match insertions ...

Let's untrivialize by allowing for gaps: insertions and deletions. Start off with the PSSM HMM. ... insertions: Introduce new states Ij match insertions ...

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Proteomics: Analyzing proteins space - Proteomics: Analyzing proteins space

Proteomics: Analyzing proteins space

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GENOME%20ANNOTATION%20AND%20FUNCTIONAL%20GENOMICS%20The%20protein%20sequence%20perspective PowerPoint PPT Presentation

GENOME%20ANNOTATION%20AND%20FUNCTIONAL%20GENOMICS%20The%20protein%20sequence%20perspective - Availability of good, well annotated protein sequence and pattern databases ... Protein sequence can come from gene predictions, literature or peptide sequencing ...

Availability of good, well annotated protein sequence and pattern databases ... Protein sequence can come from gene predictions, literature or peptide sequencing ...

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GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective - GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

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GENOME%20ANNOTATION%20AND%20FUNCTIONAL%20GENOMICS%20The%20protein%20sequence%20perspective - GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

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Database Modeling in Bioinformatics PowerPoint PPT Presentation

Database Modeling in Bioinformatics - Title: Database Modeling in Bioinformatics Author: Beate Marx Last modified by: mulder Created Date: 9/23/1999 3:45:52 PM Document presentation format

Title: Database Modeling in Bioinformatics Author: Beate Marx Last modified by: mulder Created Date: 9/23/1999 3:45:52 PM Document presentation format

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Bioinformatics II http://biochem158.stanford.edu/bioinformatics.html PowerPoint PPT Presentation

Bioinformatics II http://biochem158.stanford.edu/bioinformatics.html - Bioinformatics II http://biochem158.stanford.edu/bioinformatics.html Genomics, Bioinformatics & Medicine http://biochem158.stanford.edu/ Doug Brutlag

Bioinformatics II http://biochem158.stanford.edu/bioinformatics.html Genomics, Bioinformatics & Medicine http://biochem158.stanford.edu/ Doug Brutlag

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Structural Genomics: PowerPoint PPT Presentation

Structural Genomics: - IPR. HTH. ENZ. LIG. DNA. SIT. SSM. Method Failed. No Hits. Same Function. ... PowerPoint Presentation Author: Watson Last modified by: Watson Created Date: 4/26/2004 ...

IPR. HTH. ENZ. LIG. DNA. SIT. SSM. Method Failed. No Hits. Same Function. ... PowerPoint Presentation Author: Watson Last modified by: Watson Created Date: 4/26/2004 ...

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PROTEIN PATTERN DATABASES PowerPoint PPT Presentation

PROTEIN PATTERN DATABASES - ... models), can use two modes ls or fs, all domains should be matched with ls ... expressions, profiles, fingerprints, Hidden Markov Models and ProDom domains ...

... models), can use two modes ls or fs, all domains should be matched with ls ... expressions, profiles, fingerprints, Hidden Markov Models and ProDom domains ...

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Delineating Protein Structural Features and Relationships Without PDB Homology Examples Using NCOR1 PowerPoint PPT Presentation

Delineating Protein Structural Features and Relationships Without PDB Homology Examples Using NCOR1 - There Are Complete or Redundancy-Reduced Search Spaces You Can Check ... Q9VFG7 Drosophila membrane protein. Q9U1V1 C.elegans membrane protein ...

There Are Complete or Redundancy-Reduced Search Spaces You Can Check ... Q9VFG7 Drosophila membrane protein. Q9U1V1 C.elegans membrane protein ...

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Learning and exploring Life science through the EBI reosurces and tools PowerPoint PPT Presentation

Learning and exploring Life science through the EBI reosurces and tools - Learning and exploring Life science through the EBI reosurces and tools BIOQUEST workshop_2011 Vicky Schneider, EMBL-EBI Training Programme Project leader

Learning and exploring Life science through the EBI reosurces and tools BIOQUEST workshop_2011 Vicky Schneider, EMBL-EBI Training Programme Project leader

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- Title: PowerPoint Presentation Author: blatter Last modified by: marie-claude blatter Created Date: 1/3/2005 2:21:26 PM Document presentation format

Title: PowerPoint Presentation Author: blatter Last modified by: marie-claude blatter Created Date: 1/3/2005 2:21:26 PM Document presentation format

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OBIGrid - OBIGrid

OBIGrid

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Dressing up Protein Sequences with Bioinformatics Data - Dressing up Protein Sequences with Bioinformatics Data

Dressing up Protein Sequences with Bioinformatics Data

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Presentaci - Alineamiento de secuencias. B squeda de hom logos. Alineamientos m ltiples. Patrones y perfiles. Curso de verano de Bioinform tica de la UCM

Alineamiento de secuencias. B squeda de hom logos. Alineamientos m ltiples. Patrones y perfiles. Curso de verano de Bioinform tica de la UCM

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UniProt: Universal Protein Resource PowerPoint PPT Presentation

UniProt: Universal Protein Resource - Unifies PIR-PSD, Swiss-Prot, TrEMBL Protein Sequence ... UniRef: Non-redundant Reference Databases for ... Nomenclature: Gene/Protein Names (Nomenclature ...

Unifies PIR-PSD, Swiss-Prot, TrEMBL Protein Sequence ... UniRef: Non-redundant Reference Databases for ... Nomenclature: Gene/Protein Names (Nomenclature ...

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Automated Annotation of Microbial Genomes, Opportunities and Pitfalls PowerPoint PPT Presentation

Automated Annotation of Microbial Genomes, Opportunities and Pitfalls - Automated Annotation of Microbial Genomes, Opportunities and Pitfalls Margie Romine Pacific Northwest National Laboratory Richland, Washington

Automated Annotation of Microbial Genomes, Opportunities and Pitfalls Margie Romine Pacific Northwest National Laboratory Richland, Washington

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Bio-Trac 25 (Proteomics: Principles and Methods) PowerPoint PPT Presentation

Bio-Trac 25 (Proteomics: Principles and Methods) - Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...

Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...

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Automatic Information Retrieval from Bioinformatics Websites PowerPoint PPT Presentation

Automatic Information Retrieval from Bioinformatics Websites - SwissProt & TrEMBL (http://us.expasy.org/sprot/) SCOP (http://scop.mrc-lmb.cam.ac.uk/scop ... NCBI BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) PSIPRED (http: ...

SwissProt & TrEMBL (http://us.expasy.org/sprot/) SCOP (http://scop.mrc-lmb.cam.ac.uk/scop ... NCBI BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) PSIPRED (http: ...

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Questions - ... in humans due to mutation in CMP-sialic acid hydroxylase (Chou et al. PNAS 95(20) ... Mutation in a Siglec (sialic acid receptor) (Angata et al. JBC 276:40282-7) ...

... in humans due to mutation in CMP-sialic acid hydroxylase (Chou et al. PNAS 95(20) ... Mutation in a Siglec (sialic acid receptor) (Angata et al. JBC 276:40282-7) ...

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MAPPING OF SEQUENCES TO GENE ONTOLOGY PowerPoint PPT Presentation

MAPPING OF SEQUENCES TO GENE ONTOLOGY - Molecular function: tasks performed by gene product ... broad biological goals accomplished by ordered assemblies of molecular functions ...

Molecular function: tasks performed by gene product ... broad biological goals accomplished by ordered assemblies of molecular functions ...

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A. Auchincloss PowerPoint PPT Presentation

A. Auchincloss - UniProtKB/Swiss-Prot and ExPASy: Protein sequence databases and proteomics tools developed at the Swiss Institute of Bioinformatics Andrea Auchincloss (andrea ...

UniProtKB/Swiss-Prot and ExPASy: Protein sequence databases and proteomics tools developed at the Swiss Institute of Bioinformatics Andrea Auchincloss (andrea ...

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Presentaci - Pairwise local/global alignment: differences Introduction to Sequence Analysis We are going to use the EMBOSS-Align tool (http://www.ebi.ac.uk/Tools/emboss/align/).

Pairwise local/global alignment: differences Introduction to Sequence Analysis We are going to use the EMBOSS-Align tool (http://www.ebi.ac.uk/Tools/emboss/align/).

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Clustering for non-redundant sequence set PowerPoint PPT Presentation

Clustering for non-redundant sequence set - Check ORF and for repeats in ORF. DECODER, ORFfinder, Repeat Masker. Sequence set. DDS, Clustal W ... and other motif databases. Update control of other public ...

Check ORF and for repeats in ORF. DECODER, ORFfinder, Repeat Masker. Sequence set. DDS, Clustal W ... and other motif databases. Update control of other public ...

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Bio-Trac 25 (Proteomics: Principles and Methods) - Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format

Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format

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Introduction to biological databases 2 PowerPoint PPT Presentation

Introduction to biological databases 2 - PRINTS Aligned motifs. Pfam HMM (Hidden Markov Models) SMART HMM. TIGRfam HMM. DOMO Aligned motifs ... ATOM 2 CA ALA A 1 -37.691 14.156 98.995 1.00 72.12 C ...

PRINTS Aligned motifs. Pfam HMM (Hidden Markov Models) SMART HMM. TIGRfam HMM. DOMO Aligned motifs ... ATOM 2 CA ALA A 1 -37.691 14.156 98.995 1.00 72.12 C ...

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Group discussion PowerPoint PPT Presentation

Group discussion - Group discussion. Name this protein. Protein sequence, from Aedes aegypti automated annotation ... Our query sequence is one of them. ...

Group discussion. Name this protein. Protein sequence, from Aedes aegypti automated annotation ... Our query sequence is one of them. ...

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Lecture Outline PowerPoint PPT Presentation

Lecture Outline - Microarray experiments are done to answer a biological question ... TOUCAN: http://homes.esat.kuleuven.be/~saerts/software/tutorial1/TOUCAN_Tutorial_Ov erview.html ...

Microarray experiments are done to answer a biological question ... TOUCAN: http://homes.esat.kuleuven.be/~saerts/software/tutorial1/TOUCAN_Tutorial_Ov erview.html ...

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Investigating Genomes with Ensembl - Investigating Genomes with Ensembl

Investigating Genomes with Ensembl

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Manipulation et traitement de donn PowerPoint PPT Presentation

Manipulation et traitement de donn - Manipulation et traitement de donn es massives Scripts et Pertinence des donn es Raymond Ripp

Manipulation et traitement de donn es massives Scripts et Pertinence des donn es Raymond Ripp

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- Title: Author: irena Last modified by: irena Created Date

Title: Author: irena Last modified by: irena Created Date

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PATHS TO EXPLOITATION A PERSONAL PERSPECTIVE PowerPoint PPT Presentation

PATHS TO EXPLOITATION A PERSONAL PERSPECTIVE - PATHS TO EXPLOITATION A PERSONAL PERSPECTIVE. Derek Fray ... Saga Flow. Calibration Facilities. Outstanding benefits of Hydrosteel include: ...

PATHS TO EXPLOITATION A PERSONAL PERSPECTIVE. Derek Fray ... Saga Flow. Calibration Facilities. Outstanding benefits of Hydrosteel include: ...

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An introduction to biological databases PowerPoint PPT Presentation

An introduction to biological databases - biological databases Database or databank ? At the beginning, subtle distinctions were done between databases and databanks (in UK, but not in the USA), such as ...

biological databases Database or databank ? At the beginning, subtle distinctions were done between databases and databanks (in UK, but not in the USA), such as ...

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Welcome to the Enteropathogen Resource Integration Center' PowerPoint PPT Presentation

Welcome to the Enteropathogen Resource Integration Center' - To find information about your gene (CDS) that you are annotating, there are two ... Now its time for your own gene (CDS) to annotate ...

To find information about your gene (CDS) that you are annotating, there are two ... Now its time for your own gene (CDS) to annotate ...

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Role%20of%20IT%20in%20Bioinformatics PowerPoint PPT Presentation

Role%20of%20IT%20in%20Bioinformatics - Role of IT in Bioinformatics. Naveena.Y. What is bioinformatics ? ... What was the reason behind the emergence of a separate domain, bioinformatics ? Brief History ...

Role of IT in Bioinformatics. Naveena.Y. What is bioinformatics ? ... What was the reason behind the emergence of a separate domain, bioinformatics ? Brief History ...

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Improving%20the%20Research%20Bootstrap%20of%20Condor%20High%20Throughput%20Computing%20for%20Non-Cluster%20Experts%20Based%20on%20Knoppix%20Instant%20Computing%20Technology - Instant Setup Technologies. Install-Based Deploy System ... Step 2: after the successful, two setup options EASY and ADVANCED are displayed on the screen. ...

Instant Setup Technologies. Install-Based Deploy System ... Step 2: after the successful, two setup options EASY and ADVANCED are displayed on the screen. ...

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Please use linux today if possible PowerPoint PPT Presentation

Please use linux today if possible - Bookshelves. Francis Ouellette. Databases on the Internet. Information system. Query system ... It was a book. The Atlas of Protein Sequences ...

Bookshelves. Francis Ouellette. Databases on the Internet. Information system. Query system ... It was a book. The Atlas of Protein Sequences ...

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Large Scale Analysis of Proteomic Data PowerPoint PPT Presentation

Large Scale Analysis of Proteomic Data - DIAMONDS Kick-Off Meeting. Gent, 4/Feb/2005. Large Scale ... Understand clusters. Understand experiment results (e.g. expression chips) Curate annotations ...

DIAMONDS Kick-Off Meeting. Gent, 4/Feb/2005. Large Scale ... Understand clusters. Understand experiment results (e.g. expression chips) Curate annotations ...

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BIOINFORMATIQUE PowerPoint PPT Presentation

BIOINFORMATIQUE - BIOINFORMATIQUE La bioinformatique : stocker, analyser et visualiser pour d couvrir L exemple du s quen age d un g nome Les banques de donn es

BIOINFORMATIQUE La bioinformatique : stocker, analyser et visualiser pour d couvrir L exemple du s quen age d un g nome Les banques de donn es

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