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Parallel Implementation of HMMPFAM on EARTH PowerPoint PPT Presentation
Parallel Implementation of HMMPFAM on EARTH - HMMER is a freely distributable implementation of profile HMM ... Exec. Model. Recv. Model. Send. Model/ Token. Manager. Event. Queue. Ready. Queue. Send. Queue ...
HMMER is a freely distributable implementation of profile HMM ... Exec. Model. Recv. Model. Send. Model/ Token. Manager. Event. Queue. Ready. Queue. Send. Queue ...
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A Cluster Based Solution for High Performance Hmmpfam Using EARTH Execution Model PowerPoint PPT Presentation
A Cluster Based Solution for High Performance Hmmpfam Using EARTH Execution Model - ... is the 'blastall' program, which is a computation intensive application ... On a cluster of 128 dual-CPU nodes, the execution time of a representative test ...
... is the 'blastall' program, which is a computation intensive application ... On a cluster of 128 dual-CPU nodes, the execution time of a representative test ...
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New Parallel Scheme of HMMer PFAM PowerPoint PPT Presentation
New Parallel Scheme of HMMer PFAM - New Parallel Scheme of HMMer PFAM. Weirong Zhu. Niu Yanwei. HMMPFAM INPUT. Profile n. Profile n- 1 ... Each slave node is only responsible for one part profiles ...
New Parallel Scheme of HMMer PFAM. Weirong Zhu. Niu Yanwei. HMMPFAM INPUT. Profile n. Profile n- 1 ... Each slave node is only responsible for one part profiles ...
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HMMER tutorial PowerPoint PPT Presentation
HMMER tutorial - Biological sequence analysis: probabilistic models of proteins and ... http://bioweb.pasteur.fr/seqanal/motif/hmmer-uk.html. Format of input alignment files ...
Biological sequence analysis: probabilistic models of proteins and ... http://bioweb.pasteur.fr/seqanal/motif/hmmer-uk.html. Format of input alignment files ...
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BLOCKS PowerPoint PPT Presentation
BLOCKS - BLOCKS http://www.blocks.fhcrc.org/ Multiply aligned ungapped segments corresponding to most highly conserved regions of proteins- represented in profile
BLOCKS http://www.blocks.fhcrc.org/ Multiply aligned ungapped segments corresponding to most highly conserved regions of proteins- represented in profile
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Lab7 PowerPoint PPT Presentation
Lab7 - Arial Calibri Courier New Office Theme Lab7 Sean Eddy s Lab HMMER Introduction HMMER executables Installation Hmmbuild : build a ...
Arial Calibri Courier New Office Theme Lab7 Sean Eddy s Lab HMMER Introduction HMMER executables Installation Hmmbuild : build a ...
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BioPerf: An Open Benchmark Suite for Evaluating Computer Architecture on Bioinformatics and Life Science Applications PowerPoint PPT Presentation
BioPerf: An Open Benchmark Suite for Evaluating Computer Architecture on Bioinformatics and Life Science Applications - BioPerf: An Open Benchmark Suite for Evaluating Computer Architecture on Bioinformatics and Life Science Applications David A. Bader Collaborators Vipin Sachdeva (U ...
BioPerf: An Open Benchmark Suite for Evaluating Computer Architecture on Bioinformatics and Life Science Applications David A. Bader Collaborators Vipin Sachdeva (U ...
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PROTEIN PATTERN DATABASES PowerPoint PPT Presentation
PROTEIN PATTERN DATABASES - ... models), can use two modes ls or fs, all domains should be matched with ls ... expressions, profiles, fingerprints, Hidden Markov Models and ProDom domains ...
... models), can use two modes ls or fs, all domains should be matched with ls ... expressions, profiles, fingerprints, Hidden Markov Models and ProDom domains ...
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PutidaNET : Interactome database service and network analysis of Pseudomonas putida KT2440 PowerPoint PPT Presentation
PutidaNET : Interactome database service and network analysis of Pseudomonas putida KT2440 - Pseudomonas putida KT2440 (P. putida KT2440) Korean BioInformation Center (KOBIC) ... Pseudomonas putida (P. putida) A ubiquitous bacterium which can break down ...
Pseudomonas putida KT2440 (P. putida KT2440) Korean BioInformation Center (KOBIC) ... Pseudomonas putida (P. putida) A ubiquitous bacterium which can break down ...
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Protein Function Prediction from Protein Interactions PowerPoint PPT Presentation
Protein Function Prediction from Protein Interactions - Rule-based system for processing free texts in scientific abstracts. Specialized in ... Discriminative approaches (e.g., SVM-PAIRWISE) Phylogenetic profiling ...
Rule-based system for processing free texts in scientific abstracts. Specialized in ... Discriminative approaches (e.g., SVM-PAIRWISE) Phylogenetic profiling ...
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Aucun titre de diapositive PowerPoint PPT Presentation
Aucun titre de diapositive - ... concepts of evolutionary biology in genome annotation. Comparative genomics, concept of orthology and paralogy. What is phylogenomics? ... Orthology/ Paralogy ...
... concepts of evolutionary biology in genome annotation. Comparative genomics, concept of orthology and paralogy. What is phylogenomics? ... Orthology/ Paralogy ...
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CSE182-L4: Scoring matrices, Dictionary Matching PowerPoint PPT Presentation
CSE182-L4: Scoring matrices, Dictionary Matching - You can subscribe ... Sometimes, homology (evolutionary similarity) exists at very low levels of ... types, which is variously known as a pattern, motif, ...
You can subscribe ... Sometimes, homology (evolutionary similarity) exists at very low levels of ... types, which is variously known as a pattern, motif, ...
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Locating markers from the genetic to the physical rice map PowerPoint PPT Presentation
Locating markers from the genetic to the physical rice map - Locating markers from the genetic to the physical rice map Review: Linkage map of molecular markers (Genetic maps) A physical map of the rice genome that is aligned ...
Locating markers from the genetic to the physical rice map Review: Linkage map of molecular markers (Genetic maps) A physical map of the rice genome that is aligned ...
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Poxviruses, Biodefense and Bioinformatics PowerPoint PPT Presentation
Poxviruses, Biodefense and Bioinformatics - Alternative codon usage pattern. Alternative evolutionary inheritance pattern ... Codon preference. HMM gene models. Similarity searching. BLAST similarity searches ...
Alternative codon usage pattern. Alternative evolutionary inheritance pattern ... Codon preference. HMM gene models. Similarity searching. BLAST similarity searches ...
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Protein Function Prediction from Protein Interactions PowerPoint PPT Presentation
Protein Function Prediction from Protein Interactions - Is this a good measure if u and v have very diff number of neighbours? ... Equiv measure slightly better in correlation w/ similarity for L1 & L2 neighbours ...
Is this a good measure if u and v have very diff number of neighbours? ... Equiv measure slightly better in correlation w/ similarity for L1 & L2 neighbours ...
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From PSIBLAST to HMMer PowerPoint PPT Presentation
From PSIBLAST to HMMer - substitution matrices should be specific to a particular site. ... Same SCOP family based on catalytic domain. Overall structure similarity noted. ACTG ...
substitution matrices should be specific to a particular site. ... Same SCOP family based on catalytic domain. Overall structure similarity noted. ACTG ...
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CSE182-L4: Scoring matrices, Dictionary Matching PowerPoint PPT Presentation
CSE182-L4: Scoring matrices, Dictionary Matching - Profile based scores are a natural way to handle this. ... (Basic protease inhibitor) (BPI) (BPTI) (Aprotinin) - Bos taurus (Bovine) ...
Profile based scores are a natural way to handle this. ... (Basic protease inhibitor) (BPI) (BPTI) (Aprotinin) - Bos taurus (Bovine) ...
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Memory Performance and Scalability of Intel PowerPoint PPT Presentation
Memory Performance and Scalability of Intel - Memory Performance and Scalability of Intel s and AMD s Dual-Core Processors: A Case Study Lu Peng1, Jih-Kwon Peir2, ... Company: LSU Other titles:
Memory Performance and Scalability of Intel s and AMD s Dual-Core Processors: A Case Study Lu Peng1, Jih-Kwon Peir2, ... Company: LSU Other titles:
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The challenge of annotating a complete eukaryotic genome: A case study in Drosophila melanogaster PowerPoint PPT Presentation
The challenge of annotating a complete eukaryotic genome: A case study in Drosophila melanogaster - Reese et al., Tutorial #3, ISMB 99. The challenge of annotating a complete eukaryotic genome: ... TATA box. Initiator (Inr) Downstream promoter element (DPE) ...
Reese et al., Tutorial #3, ISMB 99. The challenge of annotating a complete eukaryotic genome: ... TATA box. Initiator (Inr) Downstream promoter element (DPE) ...
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Introduction to Sequence Analysis Software PowerPoint PPT Presentation
Introduction to Sequence Analysis Software - Jaime E. Ramirez-Vick, PhD ... Sequence analysis is the process of applying ... The stronger the evidence, the more confident we can be in the inference. ...
Jaime E. Ramirez-Vick, PhD ... Sequence analysis is the process of applying ... The stronger the evidence, the more confident we can be in the inference. ...
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PROLOGUE: PowerPoint PPT Presentation
PROLOGUE: - PROLOGUE: Pitfalls of standard alignments Dynamic programming filtering procedure Maximum-scoring subsequences with constrained segment length and number www.cbs.dtu ...
PROLOGUE: Pitfalls of standard alignments Dynamic programming filtering procedure Maximum-scoring subsequences with constrained segment length and number www.cbs.dtu ...
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Profiles and Hidden Markov Models PowerPoint PPT Presentation
Profiles and Hidden Markov Models - ... methods work by providing a statistical frame where the probability of residues ... In DNA, there are four symbols or states: G, A, T and C (20 in proteins) ...
... methods work by providing a statistical frame where the probability of residues ... In DNA, there are four symbols or states: G, A, T and C (20 in proteins) ...
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Using explicit control processes in distributed workflows to gather provenance PowerPoint PPT Presentation
Using explicit control processes in distributed workflows to gather provenance - Use of grid x remote parallel machines. Use of different WfMS ... What if the grid WfMS does not support loops ? ... encompassing specific grid features. Based ...
Use of grid x remote parallel machines. Use of different WfMS ... What if the grid WfMS does not support loops ? ... encompassing specific grid features. Based ...
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