43 Haploview PPTs View free & download

PLINK gPLINK Haploview Whole genome association software tutorial PowerPoint PPT Presentation

PLINK gPLINK Haploview Whole genome association software tutorial - determine SNP frequencies and test Hardy-Weinberg equilibrium ... Jeff Barrett. Mark Daly. Shaun Purcell. Kathe Todd-Brown. Ben Neale. Mark Daly. Pak Sham ...

determine SNP frequencies and test Hardy-Weinberg equilibrium ... Jeff Barrett. Mark Daly. Shaun Purcell. Kathe Todd-Brown. Ben Neale. Mark Daly. Pak Sham ...

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Stata commands for moving data between PHASE and HaploView Stata Conference DC PowerPoint PPT Presentation

Stata commands for moving data between PHASE and HaploView Stata Conference DC - Write Stata commands that efficiently export and import data for these 'boutique' programs ... Compared to recreating 'boutique' programs in Stata, it is ...

Write Stata commands that efficiently export and import data for these 'boutique' programs ... Compared to recreating 'boutique' programs in Stata, it is ...

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Haplotype analysis PowerPoint PPT Presentation

Haplotype analysis - but given only genotype data, consistent with Am/aM as ... Visualising data and testing for association in Haploview. Detecting haplotpe association using whap ...

but given only genotype data, consistent with Am/aM as ... Visualising data and testing for association in Haploview. Detecting haplotpe association using whap ...

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Resources at HapMap'Org PowerPoint PPT Presentation

Resources at HapMap'Org - Download information on the SNPs in ROI for use in Haploview. Add custom tracks of association data. Create publication-quality images ...

Download information on the SNPs in ROI for use in Haploview. Add custom tracks of association data. Create publication-quality images ...

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Association mapping with high density marker panels PowerPoint PPT Presentation

Association mapping with high density marker panels - Daly et al, Nat Genet (2001) Visualizing empirical LD. Haplotype blocks. Haplotype blocks ... et al. (2005) Nat Genet 37:1217. Transferability among populations ...

Daly et al, Nat Genet (2001) Visualizing empirical LD. Haplotype blocks. Haplotype blocks ... et al. (2005) Nat Genet 37:1217. Transferability among populations ...

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Picking SNPs PowerPoint PPT Presentation

Picking SNPs - 'the nonindependence of alleles at different sites.' Pritchard and ... Interactive tool (VH1) to visualize and sort haplotypes. http://pga.gs.washington.edu ...

'the nonindependence of alleles at different sites.' Pritchard and ... Interactive tool (VH1) to visualize and sort haplotypes. http://pga.gs.washington.edu ...

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Stata%20commands%20for%20moving%20data%20between%20PHASE%20and%20HaploView%20Stata%20Conference%20DC%20 PowerPoint PPT Presentation

Stata%20commands%20for%20moving%20data%20between%20PHASE%20and%20HaploView%20Stata%20Conference%20DC%20 - Many rapidly growing areas of research utilize multiple specialty ' ... Programs written by Adrian Mander. gipf - Graphical representation of log-linear models. ...

Many rapidly growing areas of research utilize multiple specialty ' ... Programs written by Adrian Mander. gipf - Graphical representation of log-linear models. ...

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The%20association%20between%20TCM%20syndromes%20and%20SCAP%20polymorphisms%20in%20subjects%20with%20non-alcoholic%20fatty%20liver%20disease - The association between TCM syndromes and SCAP polymorphisms in subjects with non-alcoholic fatty liver disease Shanshan Sun, Tao Wu, Miao Wang, Wei Li, Lin Wang ...

The association between TCM syndromes and SCAP polymorphisms in subjects with non-alcoholic fatty liver disease Shanshan Sun, Tao Wu, Miao Wang, Wei Li, Lin Wang ...

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Human Haplotype Map PowerPoint PPT Presentation

Human Haplotype Map - Human Haplotype Map. General Idea: Characterize the ... 10% Beijing/Shanghai/Hong Kong (Yang, Zeng, Huang, Tsui) 9% Whitehead Institute (Altshuler) ...

Human Haplotype Map. General Idea: Characterize the ... 10% Beijing/Shanghai/Hong Kong (Yang, Zeng, Huang, Tsui) 9% Whitehead Institute (Altshuler) ...

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HapMap data for genome-wide disease association studies PowerPoint PPT Presentation

HapMap data for genome-wide disease association studies - HapMap data for genome-wide disease association studies ~ cases from SNP Research Center, RIKEN ~ Toshihiro Tanaka SNP Research Center, RIKEN Millennium SNP projects ...

HapMap data for genome-wide disease association studies ~ cases from SNP Research Center, RIKEN ~ Toshihiro Tanaka SNP Research Center, RIKEN Millennium SNP projects ...

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Replication and Finemapping of Quantitative Trait Loci Influencing QT interval duration in the Jackson Heart Study PowerPoint PPT Presentation

Replication and Finemapping of Quantitative Trait Loci Influencing QT interval duration in the Jackson Heart Study - Sara Tribune. Mentor: Christopher Newton-Cheh ... Jackson Heart Study Undergraduate Training Center (Tribune) Broad Summer Research Program in Genomics (Tribune) ...

Sara Tribune. Mentor: Christopher Newton-Cheh ... Jackson Heart Study Undergraduate Training Center (Tribune) Broad Summer Research Program in Genomics (Tribune) ...

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Molecular - Molecular

Molecular

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HapMap: - ENCODE variation reference resource available ... much more complete variation resource by which. the ... Genome-wide products can capture most common variation ...

ENCODE variation reference resource available ... much more complete variation resource by which. the ... Genome-wide products can capture most common variation ...

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FTO%20Polymorphisms%20and%20Obesity%20in%20Han%20Chinese%20Adolescents:%20A%20case-control%20study PowerPoint PPT Presentation

FTO%20Polymorphisms%20and%20Obesity%20in%20Han%20Chinese%20Adolescents:%20A%20case-control%20study - 2nd International Conference on Epidemiology & Evolutionary Genetics FTO Polymorphisms and Obesity in Han Chinese Adolescents: A case-control study

2nd International Conference on Epidemiology & Evolutionary Genetics FTO Polymorphisms and Obesity in Han Chinese Adolescents: A case-control study

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Workshop Attendees: PowerPoint PPT Presentation

Workshop Attendees: - Title: Slide 1 Author: HSLS Last modified by: YiBu Chen Created Date: 3/2/2005 2:27:53 PM Document presentation format: On-screen Show Company: University of Pittsburgh

Title: Slide 1 Author: HSLS Last modified by: YiBu Chen Created Date: 3/2/2005 2:27:53 PM Document presentation format: On-screen Show Company: University of Pittsburgh

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Resources at HapMap.Org - Resources at HapMap'Org

Resources at HapMap'Org

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Centro Nacional Genotipado PowerPoint PPT Presentation

Centro Nacional Genotipado - Centro Nacional Genotipado An lisis bioinform tico de secuencias y expresi n de genes y genomas. Human SNPs. Teoria y pr cticas. Arcadi Navarro

Centro Nacional Genotipado An lisis bioinform tico de secuencias y expresi n de genes y genomas. Human SNPs. Teoria y pr cticas. Arcadi Navarro

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HapMap: - Discuss the application of HapMap to all aspects of association ... Lazarus. As well as several detailed posters! Applying the HapMap. Study design - tagging ...

Discuss the application of HapMap to all aspects of association ... Lazarus. As well as several detailed posters! Applying the HapMap. Study design - tagging ...

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Integrated Genomics to Enhance Host Resistance to Bacterial Colonization in Poultry - Integrated Genomics to Enhance Host Resistance to Bacterial Colonization in Poultry

Integrated Genomics to Enhance Host Resistance to Bacterial Colonization in Poultry

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Bioinformatics tools and techniques Into the heart of darkness PowerPoint PPT Presentation

Bioinformatics tools and techniques Into the heart of darkness - Application for saving notes, to-do lists, daily logs, and any other kind of ... Result is a list of additional proxy SNPs that have been obtained by LD expansion ...

Application for saving notes, to-do lists, daily logs, and any other kind of ... Result is a list of additional proxy SNPs that have been obtained by LD expansion ...

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HapMap: - Percentage of deeply ascertained common variants. highly correlated with a HapMap SNP ... ascertained variant and a neighboring HapMap SNP. Coverage of Phase II HapMap ...

Percentage of deeply ascertained common variants. highly correlated with a HapMap SNP ... ascertained variant and a neighboring HapMap SNP. Coverage of Phase II HapMap ...

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NAMIC Core 3.2 PowerPoint PPT Presentation

NAMIC Core 3.2 - To assess the state of the art in the various established fields of genetics and ... Exon 11. BDNF-1 SNP BDNF-2 BDNF-3 BDNF-4 ...

To assess the state of the art in the various established fields of genetics and ... Exon 11. BDNF-1 SNP BDNF-2 BDNF-3 BDNF-4 ...

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Replication and Finemapping of Quantitative Trait Loci Influencing QT interval duration in the Jackson Heart Study - Nick Patterson. Arti Tandon. Shawna Young. Bruce Birren. Funding support ... James Wilson. Meggie Akylbekova. Sarah Buxbaum. Thank you. Electrocardiograms ...

Nick Patterson. Arti Tandon. Shawna Young. Bruce Birren. Funding support ... James Wilson. Meggie Akylbekova. Sarah Buxbaum. Thank you. Electrocardiograms ...

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Molecular Epidemiology of Lung Cancer in Chinese Population PowerPoint PPT Presentation

Molecular Epidemiology of Lung Cancer in Chinese Population - Alper-JCCC Molecular Epidemiology Symposium Molecular Epidemiology of Lung Cancer in Chinese Population Hongbing Shen, M.D., Ph.D Professor of Epidemiology

Alper-JCCC Molecular Epidemiology Symposium Molecular Epidemiology of Lung Cancer in Chinese Population Hongbing Shen, M.D., Ph.D Professor of Epidemiology

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Association mapping: PowerPoint PPT Presentation

Association mapping: - Association mapping: finding genetic variants for common traits & diseases Manuel Ferreira Genetic Epidemiology Queensland Institute of Medical Research

Association mapping: finding genetic variants for common traits & diseases Manuel Ferreira Genetic Epidemiology Queensland Institute of Medical Research

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Sequence Analysis (II) PowerPoint PPT Presentation

Sequence Analysis (II) - Sequence Analysis (II) Yuh-Shan Jou ( ) jou@ibms.sinica.edu.tw Institute of Biomedical Sciences, Academia Sinica

Sequence Analysis (II) Yuh-Shan Jou ( ) jou@ibms.sinica.edu.tw Institute of Biomedical Sciences, Academia Sinica

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1 of 25 - Polymorphism: a DNA variation in which each possible sequence is present in at ... Zebrafish. Tetraodon. Mosquito. 11 of 25. Caveat ...

Polymorphism: a DNA variation in which each possible sequence is present in at ... Zebrafish. Tetraodon. Mosquito. 11 of 25. Caveat ...

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PLINK: a toolset for whole genome association analysis PowerPoint PPT Presentation

PLINK: a toolset for whole genome association analysis - ... .048 1 rs00011 22633 C 0.1925 0.1926 G 8.647e-05 0.9926 0.9992 1 rs00012 24739 C 0.152 0.1326 T 2.995 0.08353 1.172 1 ...

... .048 1 rs00011 22633 C 0.1925 0.1926 G 8.647e-05 0.9926 0.9992 1 rs00012 24739 C 0.152 0.1326 T 2.995 0.08353 1.172 1 ...

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Discovery of GenomeWide SNPs in Diverse Rice a foundation for WholeGenome Association Studies - Discovery of GenomeWide SNPs in Diverse Rice a foundation for WholeGenome Association Studies

Discovery of GenomeWide SNPs in Diverse Rice a foundation for WholeGenome Association Studies

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Linkage Disequilibrium PowerPoint PPT Presentation

Linkage Disequilibrium - Fourth Edition (Hardcover) by Daniel L. Hartl, Andrew G. Clark (Author) x. x. x ... Linkage and Association Eds Benjamin M. Neale, Manuel A.R. Ferreira, ...

Fourth Edition (Hardcover) by Daniel L. Hartl, Andrew G. Clark (Author) x. x. x ... Linkage and Association Eds Benjamin M. Neale, Manuel A.R. Ferreira, ...

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Hiroshi IKEGAMI PowerPoint PPT Presentation

Hiroshi IKEGAMI - Hiroshi IKEGAMI. Osaka University Graduate School of Medicine ... homo :hetero. Japanese. Korean. Japanese. Korean. Kawabata Y et al. Diabetes 51:545-551, 2002 ...

Hiroshi IKEGAMI. Osaka University Graduate School of Medicine ... homo :hetero. Japanese. Korean. Japanese. Korean. Kawabata Y et al. Diabetes 51:545-551, 2002 ...

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Ensembl Database and Web Browser www'ensembl'org - Ensembl Database and Web Browser www'ensembl'org

Ensembl Database and Web Browser www'ensembl'org

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Haplotype blocks and tagging SNPs PowerPoint PPT Presentation

Haplotype blocks and tagging SNPs - Biostat 830 Winter 2006. Haplotype blocks ... Biostat 830 Winter 2006. Reich et al. 2001. Extended LD observed in part of the genome. ...

Biostat 830 Winter 2006. Haplotype blocks ... Biostat 830 Winter 2006. Reich et al. 2001. Extended LD observed in part of the genome. ...

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Haplotype Blocks: or how I learned to stop worrying and love the recombination hotspot PowerPoint PPT Presentation

Haplotype Blocks: or how I learned to stop worrying and love the recombination hotspot - Haplotype Blocks: or how I learned to stop worrying and love the recombination hotspot Benjamin Neale, David Evans, Pak Sham Boulder, Colorado March 2005

Haplotype Blocks: or how I learned to stop worrying and love the recombination hotspot Benjamin Neale, David Evans, Pak Sham Boulder, Colorado March 2005

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Statistical Genetics 6 GWAS Data QC PowerPoint PPT Presentation

Statistical Genetics 6 GWAS Data QC - Other materials and machines and assay conditions ... Pearson's Chi-square. Chi-square statistics for trend. incl. Armitage-Cockran's trend statistics ...

Other materials and machines and assay conditions ... Pearson's Chi-square. Chi-square statistics for trend. incl. Armitage-Cockran's trend statistics ...

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The role of inflammatory genes in a gastric precancerous lesion PowerPoint PPT Presentation

The role of inflammatory genes in a gastric precancerous lesion - ... Tanja Rundek2,4,Rong Cheng3,Edward Hsi1,Ralph L. Sacco2,4,Suh-Hang Hank Juo1,2, ... Lipid levels are major predictors of cardiovascular disease (CVD) ...

... Tanja Rundek2,4,Rong Cheng3,Edward Hsi1,Ralph L. Sacco2,4,Suh-Hang Hank Juo1,2, ... Lipid levels are major predictors of cardiovascular disease (CVD) ...

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An Introduction to Bioinformatics PowerPoint PPT Presentation

An Introduction to Bioinformatics - 1866 - Gregor Mendel's discovery of the laws of heredity ... Xenopus tropicalis. Gallus gallus. Mus musculus. Pan troglodytes. Homo sapiens ...

1866 - Gregor Mendel's discovery of the laws of heredity ... Xenopus tropicalis. Gallus gallus. Mus musculus. Pan troglodytes. Homo sapiens ...

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Chronic pain is caused by injuries, diseases, drugs, toxins, and enigmatic reasons it persists at le PowerPoint PPT Presentation

Chronic pain is caused by injuries, diseases, drugs, toxins, and enigmatic reasons it persists at le - incapacitation and significant erosion of the Quality-of-Life. ... This variability is controlled by interacting genetic and non-genetic, environmental variables. ...

incapacitation and significant erosion of the Quality-of-Life. ... This variability is controlled by interacting genetic and non-genetic, environmental variables. ...

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Alcoholism: From Genotypes to Genes and Back Again PowerPoint PPT Presentation

Alcoholism: From Genotypes to Genes and Back Again - Rebecca Ortiz. NIAAA. Robert Karp. Project Consultants. David Goldman, NIAAA. John Crabbe, Oregon Health Sciences. John Rice, Washington Univ, St. Louis ...

Rebecca Ortiz. NIAAA. Robert Karp. Project Consultants. David Goldman, NIAAA. John Crabbe, Oregon Health Sciences. John Rice, Washington Univ, St. Louis ...

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A List of Softwares for Haplotype Frequency Estimation or Reconstruction PowerPoint PPT Presentation

A List of Softwares for Haplotype Frequency Estimation or Reconstruction - ... by each individual with missing data imputation using a set of logic rules; ... equilibrium (add one locus at a time) and multiple imputation by Gibbs Sampler. ...

... by each individual with missing data imputation using a set of logic rules; ... equilibrium (add one locus at a time) and multiple imputation by Gibbs Sampler. ...

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Common Deletion Polymorphisms in the Human Genome PowerPoint PPT Presentation

Common Deletion Polymorphisms in the Human Genome - Gregor Mendel. Gregor Mendel is called Father of modern genetics. ... These hemizygous deletions often lead to Mendel inconsistency. ...

Gregor Mendel. Gregor Mendel is called Father of modern genetics. ... These hemizygous deletions often lead to Mendel inconsistency. ...

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Core 3.2 Activities University of California, Irvine PowerPoint PPT Presentation

Core 3.2 Activities University of California, Irvine - Core 3'2 Activities University of California, IrvineBrain Imaging Center Steven Potkin, Padhraic Smy

Core 3'2 Activities University of California, IrvineBrain Imaging Center Steven Potkin, Padhraic Smy

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http://creativecommons.org/licenses/by-sa/2.0/ PowerPoint PPT Presentation

http://creativecommons.org/licenses/by-sa/2.0/ - ContigView of best in genome gene with associated evidence. Known gene (p53) Proteins aligned ... Identify novel exons ab initio using Genscan ... Exercises ...

ContigView of best in genome gene with associated evidence. Known gene (p53) Proteins aligned ... Identify novel exons ab initio using Genscan ... Exercises ...

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Haploview PowerPoint PPT Presentations