272 Dayhoff PPTs View free & download

Dayhoff - Brands of Soup Revisited. Brand A. Brand B. P(B|A) = 2/7. P(A|B) = 2/7. Brands of Soup Revisited. Brand A. Brand B. P(B|A) = p = 2/7. P(A|B) = p = 2/7 ...

Brands of Soup Revisited. Brand A. Brand B. P(B|A) = 2/7. P(A|B) = 2/7. Brands of Soup Revisited. Brand A. Brand B. P(B|A) = p = 2/7. P(A|B) = p = 2/7 ...

| PowerPoint PPT presentation | free to download

Margaret Dayhoff PowerPoint PPT Presentation

Margaret Dayhoff - 'To those who would know the biochemical structure, function and ... Uniform mutation rates (Jukes-Cantor) Two separate mutation rates (Kimura) Transitions ...

'To those who would know the biochemical structure, function and ... Uniform mutation rates (Jukes-Cantor) Two separate mutation rates (Kimura) Transitions ...

| PowerPoint PPT presentation | free to view

Protein Mutational Analysis Using Statistical Geometry Methods PowerPoint PPT Presentation

Protein Mutational Analysis Using Statistical Geometry Methods - formed by linearly linking amino acid residues (aa's are the building blocks of proteins) ... Dayhoff (similar wrt structure or function) (A,S,T,G,P),(V,L,I,M) ...

formed by linearly linking amino acid residues (aa's are the building blocks of proteins) ... Dayhoff (similar wrt structure or function) (A,S,T,G,P),(V,L,I,M) ...

| PowerPoint PPT presentation | free to download

Chapter 2: Neural Networks PowerPoint PPT Presentation

Chapter 2: Neural Networks - Chapter 2: Neural Networks. jed2277@earthlink.net. Dr. Judy Dayhoff ...

Chapter 2: Neural Networks. jed2277@earthlink.net. Dr. Judy Dayhoff ...

| PowerPoint PPT presentation | free to view

Womens National Duckpin Association PowerPoint PPT Presentation

Womens National Duckpin Association - Kristen Robustelli (Alternate) Maryland at Large. Brenda Hoff. Beth Dayhoff (Alternate) ... Town Hall Lanes, Johnston, Rhode Island Aug. 8th & 10th ...

Kristen Robustelli (Alternate) Maryland at Large. Brenda Hoff. Beth Dayhoff (Alternate) ... Town Hall Lanes, Johnston, Rhode Island Aug. 8th & 10th ...

| PowerPoint PPT presentation | free to view

Pairwise Sequence Alignment Part 2 PowerPoint PPT Presentation

Pairwise Sequence Alignment Part 2 - Using a scoring method, we can generate a maximum scoring alignment. ... aliphatic. aromatic. small. tiny. hydrophobic. Protein Scoring Methods. Dayhoff PAM Matrix ...

Using a scoring method, we can generate a maximum scoring alignment. ... aliphatic. aromatic. small. tiny. hydrophobic. Protein Scoring Methods. Dayhoff PAM Matrix ...

| PowerPoint PPT presentation | free to view

Pairwise sequence PowerPoint PPT Presentation

Pairwise sequence - Pairwise sequence Alignment Homology, Score Matrix

Pairwise sequence Alignment Homology, Score Matrix

| PowerPoint PPT presentation | free to download

Martin Vingron PowerPoint PPT Presentation

Martin Vingron - Family Specific Rates of Protein Evolution or, more general Markov models in protein evolution: Resolvent method, Systers, FSR Martin Vingron Max-Planck-Institut f r ...

Family Specific Rates of Protein Evolution or, more general Markov models in protein evolution: Resolvent method, Systers, FSR Martin Vingron Max-Planck-Institut f r ...

| PowerPoint PPT presentation | free to download

A Lifetime of Biomedical Computing: A Conversation with Robert Ledley - A Lifetime of Biomedical Computing: A Conversation with Robert Ledley

A Lifetime of Biomedical Computing: A Conversation with Robert Ledley

| PowerPoint PPT presentation | free to view

Scoring the Alignment of Amino Acid Sequences PowerPoint PPT Presentation

Scoring the Alignment of Amino Acid Sequences - Scoring the Alignment of Amino Acid Sequences Constructing PAM and Blosum Matrices

Scoring the Alignment of Amino Acid Sequences Constructing PAM and Blosum Matrices

| PowerPoint PPT presentation | free to download

GA for Sequence Alignment PowerPoint PPT Presentation

GA for Sequence Alignment - GA for Sequence Alignment Pair-wise alignment Multiple string alignment Pairwise Sequence Alignment VNRLQQNIVSLEVDHKVANYKP VNRLQQSIVSLRDAFNDGELD HRVLNYKP Solving by a ...

GA for Sequence Alignment Pair-wise alignment Multiple string alignment Pairwise Sequence Alignment VNRLQQNIVSLEVDHKVANYKP VNRLQQSIVSLRDAFNDGELD HRVLNYKP Solving by a ...

| PowerPoint PPT presentation | free to view

Scoring matrices PowerPoint PPT Presentation

Scoring matrices - Identity matrix exact matches receive one score and non-exat matches a ... Isoleucine for Valine (both small, hydrophobic) Serine for Threonine (both polar) ...

Identity matrix exact matches receive one score and non-exat matches a ... Isoleucine for Valine (both small, hydrophobic) Serine for Threonine (both polar) ...

| PowerPoint PPT presentation | free to download

Lecture 1A - Application of tools of computation and analysis to the capture and ... Problems too great fro human discernment. What areas of biology use bioinformatics? ...

Application of tools of computation and analysis to the capture and ... Problems too great fro human discernment. What areas of biology use bioinformatics? ...

| PowerPoint PPT presentation | free to view

Bioinformatics in Drug Design PowerPoint PPT Presentation

Bioinformatics in Drug Design - Title: Bioinformatics in Drug Design Subject: outline Author: pirovano Last modified by: heringa Created Date: 11/9/2006 3:32:34 PM Category: lecture series

Title: Bioinformatics in Drug Design Subject: outline Author: pirovano Last modified by: heringa Created Date: 11/9/2006 3:32:34 PM Category: lecture series

| PowerPoint PPT presentation | free to download

MATRICES PAM Y BLOSUM PowerPoint PPT Presentation

MATRICES PAM Y BLOSUM - Matrices de sustituci n de amino cidos Las sustituciones de aa m s comunes se dan entre aquellos de estructura qu micamente parecidos. Sabiendo los tipos de ...

Matrices de sustituci n de amino cidos Las sustituciones de aa m s comunes se dan entre aquellos de estructura qu micamente parecidos. Sabiendo los tipos de ...

| PowerPoint PPT presentation | free to view

Basics of Sequence Alignment and Weight Matrices and DOT Plot PowerPoint PPT Presentation

Basics of Sequence Alignment and Weight Matrices and DOT Plot - Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/

Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/

| PowerPoint PPT presentation | free to download

Heuristic approaches PowerPoint PPT Presentation

Heuristic approaches - BIOTECHNOLOGY

BIOTECHNOLOGY

| PowerPoint PPT presentation | free to download

Algorithms for Biological Sequence Analysis PowerPoint PPT Presentation

Algorithms for Biological Sequence Analysis - Algorithms for Biological Sequence Analysis Kun-Mao Chao ( ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan

Algorithms for Biological Sequence Analysis Kun-Mao Chao ( ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan

| PowerPoint PPT presentation | free to download

Adams County, Pennsylvania PowerPoint PPT Presentation

Adams County, Pennsylvania - Title: PowerPoint Presentation Author: Solid Waste 4 Last modified by: RubyE Created Date: 5/6/2002 12:20:03 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: Solid Waste 4 Last modified by: RubyE Created Date: 5/6/2002 12:20:03 PM Document presentation format: On-screen Show

| PowerPoint PPT presentation | free to download

Alignment III PAM Matrices PowerPoint PPT Presentation

Alignment III PAM Matrices - Next mutation depends only on current state and is independent of previous mutations ... Scoring matrices are derived from PAM matrices to yield log-odds scores. ...

Next mutation depends only on current state and is independent of previous mutations ... Scoring matrices are derived from PAM matrices to yield log-odds scores. ...

| PowerPoint PPT presentation | free to view

Introduction to Bioinformatics PowerPoint PPT Presentation

Introduction to Bioinformatics - Introduction to Bioinformatics Lecture 6 Substitution matrices Archaea PAM model The scores derived through the PAM model are an accurate description of the ...

Introduction to Bioinformatics Lecture 6 Substitution matrices Archaea PAM model The scores derived through the PAM model are an accurate description of the ...

| PowerPoint PPT presentation | free to download

Introduction to Bioinformatics - 1950 Complementary Bases discovered. Edwin Chargaff. 1953 DNA is a ... Determine expression mechanisms via identifying alternative splicing regions. Proteomics ...

1950 Complementary Bases discovered. Edwin Chargaff. 1953 DNA is a ... Determine expression mechanisms via identifying alternative splicing regions. Proteomics ...

| PowerPoint PPT presentation | free to view

Sequence Alignment PowerPoint PPT Presentation

Sequence Alignment - Use of the amino acid similarities based on physico-chemical properties ... a is mutated to an amino acid x in the first PAM, and then to b in the next, ...

Use of the amino acid similarities based on physico-chemical properties ... a is mutated to an amino acid x in the first PAM, and then to b in the next, ...

| PowerPoint PPT presentation | free to download

MB280 Introduction to Bioinformatics 3 credits Genes, machines and you' Learn the basics of analyzin PowerPoint PPT Presentation

MB280 Introduction to Bioinformatics 3 credits Genes, machines and you' Learn the basics of analyzin - ... of analyzing DNA and protein sequences using state of the art computer software ... 10/11/07 7th Lab Assignment: i. Read the Phylip HTML pages/go to the ...

... of analyzing DNA and protein sequences using state of the art computer software ... 10/11/07 7th Lab Assignment: i. Read the Phylip HTML pages/go to the ...

| PowerPoint PPT presentation | free to view

Biyoinformatik PowerPoint PPT Presentation

Biyoinformatik - Biyoinformatik zg r ak r Bilgisayarlar n molek ler biyolojide kullan m Molek llerin boyutlu grafik temsili Molek ler dizilimler boyutlu yap ...

Biyoinformatik zg r ak r Bilgisayarlar n molek ler biyolojide kullan m Molek llerin boyutlu grafik temsili Molek ler dizilimler boyutlu yap ...

| PowerPoint PPT presentation | free to download

Phylogenetic Analysis PowerPoint PPT Presentation

Phylogenetic Analysis - Phylogenetics Get related sequences of interest Perform multiple sequence alignments Edit alignment Estimate phylogenetic relationships Interpret results correctly ...

Phylogenetics Get related sequences of interest Perform multiple sequence alignments Edit alignment Estimate phylogenetic relationships Interpret results correctly ...

| PowerPoint PPT presentation | free to download

Trees, Stars, and Multiple Biological Sequence Alignment PowerPoint PPT Presentation

Trees, Stars, and Multiple Biological Sequence Alignment - Forms an -dimensional parallelepiped. 02/19/2004. 7. Paths. 2 dimensions. 3 dimensions ... 3-dimensional parallelepiped. sublattice. Sequences DQLF, DNVQ, QGL ...

Forms an -dimensional parallelepiped. 02/19/2004. 7. Paths. 2 dimensions. 3 dimensions ... 3-dimensional parallelepiped. sublattice. Sequences DQLF, DNVQ, QGL ...

| PowerPoint PPT presentation | free to download

Financial Aid What I Need to Know PowerPoint PPT Presentation

Financial Aid What I Need to Know - Schools you list on FAFSA receive information. Look for communications from those colleges. Follow-up with financial aid office. Review financial aid page of college ...

Schools you list on FAFSA receive information. Look for communications from those colleges. Follow-up with financial aid office. Review financial aid page of college ...

| PowerPoint PPT presentation | free to download

Predicci - Predicci n de rboles filogen ticos: UPGMA Marco Antonio Robles Montoya

Predicci n de rboles filogen ticos: UPGMA Marco Antonio Robles Montoya

| PowerPoint PPT presentation | free to download

Allineamenti e Misure di Similarit PowerPoint PPT Presentation

Allineamenti e Misure di Similarit - Title: Concetti introduttivi all analisi delle Biosequenze Author: pp pp Last modified by: mfasano Created Date: 5/1/2002 4:20:34 PM Document presentation format

Title: Concetti introduttivi all analisi delle Biosequenze Author: pp pp Last modified by: mfasano Created Date: 5/1/2002 4:20:34 PM Document presentation format

| PowerPoint PPT presentation | free to view

Techniques for Protein Sequence Alignment and Database Searching PowerPoint PPT Presentation

Techniques for Protein Sequence Alignment and Database Searching - Techniques for Protein Sequence Alignment and Database Searching. G P S Raghava ... Fitch 1966 based on Nucleotide Base change required (0,1,2,3) ...

Techniques for Protein Sequence Alignment and Database Searching. G P S Raghava ... Fitch 1966 based on Nucleotide Base change required (0,1,2,3) ...

| PowerPoint PPT presentation | free to download

Algorithms for Biological Sequence Analysis - Department of Computer Science and Information Engineering. National Taiwan ... [ Marshall Nirenberg, Har Gobind Khorana, Sydney Brenner & Francis Crick] ...

Department of Computer Science and Information Engineering. National Taiwan ... [ Marshall Nirenberg, Har Gobind Khorana, Sydney Brenner & Francis Crick] ...

| PowerPoint PPT presentation | free to download

Sequence database searching PowerPoint PPT Presentation

Sequence database searching - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show

| PowerPoint PPT presentation | free to download

10%20Years%20of%20DICOM%20at%20the%20Department%20of%20Veterans%20Affairs PowerPoint PPT Presentation

10%20Years%20of%20DICOM%20at%20the%20Department%20of%20Veterans%20Affairs - 10 Years of DICOM at the Department of Veterans Affairs

10 Years of DICOM at the Department of Veterans Affairs

| PowerPoint PPT presentation | free to download

Basics of Sequence Alignment and Weight Matrices and DOT Plot - Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/ Importance of Sequence ...

Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/ Importance of Sequence ...

| PowerPoint PPT presentation | free to view

BioinformaticsCSM17 Week 8: Simulations (1) Soft Computing: PowerPoint PPT Presentation

BioinformaticsCSM17 Week 8: Simulations (1) Soft Computing: - Bioinformatics CSM17 Week 8: Simulations (1) Soft Computing: Genetic Algorithms Evolutionary Computation Neural Networks JYC: CSM17

Bioinformatics CSM17 Week 8: Simulations (1) Soft Computing: Genetic Algorithms Evolutionary Computation Neural Networks JYC: CSM17

| PowerPoint PPT presentation | free to view

Optimatization of a New Score Function for the Detection of Remote Homologs PowerPoint PPT Presentation

Optimatization of a New Score Function for the Detection of Remote Homologs - Optimatization of a New Score Function for the Detection of Remote Homologs Kann et al

Optimatization of a New Score Function for the Detection of Remote Homologs Kann et al

| PowerPoint PPT presentation | free to download

Amino Acid Scoring Matrices PowerPoint PPT Presentation

Amino Acid Scoring Matrices - Metric Conversions. Proteins. 3-dimensional stuctures. Composed of amino acids chained together ... is found using a metric, resulting alignment scores are ...

Metric Conversions. Proteins. 3-dimensional stuctures. Composed of amino acids chained together ... is found using a metric, resulting alignment scores are ...

| PowerPoint PPT presentation | free to download

Dynamic-Programming%20Strategies%20for%20Analyzing%20Biomolecular%20Sequences PowerPoint PPT Presentation

Dynamic-Programming%20Strategies%20for%20Analyzing%20Biomolecular%20Sequences - Dynamic-Programming Strategies for Analyzing Biomolecular Sequences

Dynamic-Programming Strategies for Analyzing Biomolecular Sequences

| PowerPoint PPT presentation | free to download

BIOLOGIA/MEDICINA PowerPoint PPT Presentation

BIOLOGIA/MEDICINA - BIOLOGIA/MEDICINA A Revolu o da Gen mica/Bioinform tica Hist ria da Biologia Molecular 1951 Fred Sanger, Amino Acid Sequence of Insulin 1953 Watson/Crick ...

BIOLOGIA/MEDICINA A Revolu o da Gen mica/Bioinform tica Hist ria da Biologia Molecular 1951 Fred Sanger, Amino Acid Sequence of Insulin 1953 Watson/Crick ...

| PowerPoint PPT presentation | free to download

Alignment and Algorithms PowerPoint PPT Presentation

Alignment and Algorithms - Alignment and Algorithms Scoring Matrices: models of evolution Dynamic Program: speed Pairwise Sequence Alignment, variants Significance Pattern recognition, Hidden ...

Alignment and Algorithms Scoring Matrices: models of evolution Dynamic Program: speed Pairwise Sequence Alignment, variants Significance Pattern recognition, Hidden ...

| PowerPoint PPT presentation | free to download

Chapter 2 Data Searches and Pairwise Alignments PowerPoint PPT Presentation

Chapter 2 Data Searches and Pairwise Alignments - Chapter 2 Data Searches and Pairwise Alignments 2004/03/08

Chapter 2 Data Searches and Pairwise Alignments 2004/03/08

| PowerPoint PPT presentation | free to view

Module 2 Sequence DBs and Similarity Searches PowerPoint PPT Presentation

Module 2 Sequence DBs and Similarity Searches - Module 2 Sequence DBs and Similarity Searches Learning objectives Understand how information is stored in GenBank. Learn how to read a Genbank flat file.

Module 2 Sequence DBs and Similarity Searches Learning objectives Understand how information is stored in GenBank. Learn how to read a Genbank flat file.

| PowerPoint PPT presentation | free to view

Molecular basis of evolution. PowerPoint PPT Presentation

Molecular basis of evolution. - Analysis of mitochondrial DNA proposes that Homo sapiens ... Human/carp. 0.216. 0.205. 0.186. Human/kangaroo. 0.134. 0.129. 0.121. Human/cow. Gamma-distance ...

Analysis of mitochondrial DNA proposes that Homo sapiens ... Human/carp. 0.216. 0.205. 0.186. Human/kangaroo. 0.134. 0.129. 0.121. Human/cow. Gamma-distance ...

| PowerPoint PPT presentation | free to download

ESTRUCTURA Y FUNCION EN BIOINFORMATICA: QUE PODEMOS PREDECIR PowerPoint PPT Presentation

ESTRUCTURA Y FUNCION EN BIOINFORMATICA: QUE PODEMOS PREDECIR - Obtenci n del alineamiento de la secuencia con los hom logos. C lculo del modelo ... Henikoff, 1992): derivada a partir de la comparaci n bloques de secuencias ...

Obtenci n del alineamiento de la secuencia con los hom logos. C lculo del modelo ... Henikoff, 1992): derivada a partir de la comparaci n bloques de secuencias ...

| PowerPoint PPT presentation | free to view

ALIGNMENT - Local alignment (Smith-Waterman) BLAST (simplified Smith-Waterman) FASTA (simplified Smith-Waterman) BESTFIT (GCG program) Global alignment (Needleman-Wunsch) ...

Local alignment (Smith-Waterman) BLAST (simplified Smith-Waterman) FASTA (simplified Smith-Waterman) BESTFIT (GCG program) Global alignment (Needleman-Wunsch) ...

| PowerPoint PPT presentation | free to view

e-mail: kartavtsev_yu48@hotmail.com PowerPoint PPT Presentation

e-mail: kartavtsev_yu48@hotmail.com - Title: Fig. 1. MtDNA structural map in Torrent catfish, Liobagrus obesus. All proteins are encoded by genes located on H-strand (upper) with the exception of ND6 ...

Title: Fig. 1. MtDNA structural map in Torrent catfish, Liobagrus obesus. All proteins are encoded by genes located on H-strand (upper) with the exception of ND6 ...

| PowerPoint PPT presentation | free to download

Comparative Genomics PowerPoint PPT Presentation

Comparative Genomics - Rate variation across sites in a protein-coding gene (first positions in ... Clock trees allow dating; non-clock trees do not. But clock trees poor fit to most data ...

Rate variation across sites in a protein-coding gene (first positions in ... Clock trees allow dating; non-clock trees do not. But clock trees poor fit to most data ...

| PowerPoint PPT presentation | free to view

Scoring Matrices - It is easy to score if an amino acid is identical to another (the score is 1 if ... a score for amino acids that are somewhat ... Amino Acid Scoring Matrices ...

It is easy to score if an amino acid is identical to another (the score is 1 if ... a score for amino acids that are somewhat ... Amino Acid Scoring Matrices ...

| PowerPoint PPT presentation | free to view

CSE182-L4:%20Scoring%20matrices,%20Dictionary%20Matching PowerPoint PPT Presentation

CSE182-L4:%20Scoring%20matrices,%20Dictionary%20Matching - Title: L3: Blast: Keyword match basics Author: Vineet Bafna Last modified by: Vineet Bafna Created Date: 10/4/2005 8:32:21 AM Document presentation format

Title: L3: Blast: Keyword match basics Author: Vineet Bafna Last modified by: Vineet Bafna Created Date: 10/4/2005 8:32:21 AM Document presentation format

| PowerPoint PPT presentation | free to download

Sequence Based Analysis Tutorial PowerPoint PPT Presentation

Sequence Based Analysis Tutorial - Scoring Matrices Based on Conserved Amino Acid Substitution ... Likelihood of One Amino Acid Mutated into Another Over Evolutionary Time ...

Scoring Matrices Based on Conserved Amino Acid Substitution ... Likelihood of One Amino Acid Mutated into Another Over Evolutionary Time ...

| PowerPoint PPT presentation | free to view

Scoring Matrices - Scoring matrices implicitly represent a particular theory of evolution ... Mutations accepted by natural selection. Constructing PAM Matrix: Training Data ...

Scoring matrices implicitly represent a particular theory of evolution ... Mutations accepted by natural selection. Constructing PAM Matrix: Training Data ...

| PowerPoint PPT presentation | free to view

Lecture outline PowerPoint PPT Presentation

Lecture outline - O(max(m,n)) if only similarity score is needed. More complicated 'divide-and-conquer' algorithm that ... log2(3)=1.585 bits or loge(3) = ln(3) = 1.1 nats ...

O(max(m,n)) if only similarity score is needed. More complicated 'divide-and-conquer' algorithm that ... log2(3)=1.585 bits or loge(3) = ln(3) = 1.1 nats ...

| PowerPoint PPT presentation | free to download

Pennsylvania PowerPoint PPT Presentation

Pennsylvania - Abandoned Railroad and the 'Muddy Creek Preservation Society' (York, PA) ... We are only one of 3 County's in PA with ASAs in all 21 of our Townships ...

Abandoned Railroad and the 'Muddy Creek Preservation Society' (York, PA) ... We are only one of 3 County's in PA with ASAs in all 21 of our Townships ...

| PowerPoint PPT presentation | free to view

SECRET Internet Protocol Router Network SIPRNET PowerPoint PPT Presentation

SECRET Internet Protocol Router Network SIPRNET - The SIPRNET is the Defense Department's communications backbone, used for ... their representatives (normally the Defense Information Systems Network Security ...

The SIPRNET is the Defense Department's communications backbone, used for ... their representatives (normally the Defense Information Systems Network Security ...

| PowerPoint PPT presentation | free to view

Models of Protein Evolution PowerPoint PPT Presentation

Models of Protein Evolution - DNA (4 x 4 rate matrix) vs amino acid (20 x 20) resulting in many more ... in MrBayes), but all codon positions the same base freq and substitution matrix ...

DNA (4 x 4 rate matrix) vs amino acid (20 x 20) resulting in many more ... in MrBayes), but all codon positions the same base freq and substitution matrix ...

| PowerPoint PPT presentation | free to view

Dayhoff PowerPoint PPT Presentations