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Biopath (BMOND) PowerPoint PPT Presentation
Biopath (BMOND) - BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
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Biopath (BMOND) PowerPoint PPT Presentation
Biopath (BMOND) - BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
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BioPAX Biological Pathway Data Exchange Format PowerPoint PPT Presentation
BioPAX Biological Pathway Data Exchange Format - Arguably the most accessible data source, but... Varied formats, representation, coverage ... 7pm - Dinner at Trellis Italian restaurant. Agenda - Day 2 ...
Arguably the most accessible data source, but... Varied formats, representation, coverage ... 7pm - Dinner at Trellis Italian restaurant. Agenda - Day 2 ...
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BioPAX A Data Exchange Format for Biological Pathways PowerPoint PPT Presentation
BioPAX A Data Exchange Format for Biological Pathways - ... the amount of time spent on data integration in the bioinformatics community. ... SRI Bioinformatics Research Group: P. Karp, S. Paley, J. Pick ...
... the amount of time spent on data integration in the bioinformatics community. ... SRI Bioinformatics Research Group: P. Karp, S. Paley, J. Pick ...
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BioPAX The Birth of A Data Exchange Language for Biological Pathways PowerPoint PPT Presentation
BioPAX The Birth of A Data Exchange Language for Biological Pathways - BOF Sunday. 30 July 2004. 7th BioOntologies Workshop. 20. BioPAX Supporting Groups. Groups ... Low Detail High Detail. 30 July 2004. 7th BioOntologies Workshop. 23 ...
BOF Sunday. 30 July 2004. 7th BioOntologies Workshop. 20. BioPAX Supporting Groups. Groups ... Low Detail High Detail. 30 July 2004. 7th BioOntologies Workshop. 23 ...
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BioPAX A Data Exchange Format for Biological Pathways PowerPoint PPT Presentation
BioPAX A Data Exchange Format for Biological Pathways - An open source community effort to build a data exchange format for biological pathways ... University of Colorado Health Sciences Center: I. Shah ...
An open source community effort to build a data exchange format for biological pathways ... University of Colorado Health Sciences Center: I. Shah ...
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BioPAX A Data Exchange Format for Biological Pathways PowerPoint PPT Presentation
BioPAX A Data Exchange Format for Biological Pathways - Provide a consistent data exchange format to make it easier for ... 0.4 kcal/mole. Delta G cml fructose-6-phosphate /cml Right cml glucose-6-phosphate /cml ...
Provide a consistent data exchange format to make it easier for ... 0.4 kcal/mole. Delta G cml fructose-6-phosphate /cml Right cml glucose-6-phosphate /cml ...
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Pathway (Network) Informatics @ MSKCC PowerPoint PPT Presentation
Pathway (Network) Informatics @ MSKCC - 3 research staff, 1 developer, 1 computing, 3 admin. Visiting Faculty: Jose Vilar ... Grants. Department of Energy. BioPAX. BioPAX = Biological Pathway Exchange ...
3 research staff, 1 developer, 1 computing, 3 admin. Visiting Faculty: Jose Vilar ... Grants. Department of Energy. BioPAX. BioPAX = Biological Pathway Exchange ...
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BioWarehouse: A Bioinformatics Database Warehouse PowerPoint PPT Presentation
BioWarehouse: A Bioinformatics Database Warehouse - A Bioinformatics Database Warehouse Peter D. Karp, Thomas J. Lee, Valerie Wagner BioCyc BioPAX BioCyc ENZYME CMR Genbank BioWarehouse Eco2DBase Oracle (10g) or
A Bioinformatics Database Warehouse Peter D. Karp, Thomas J. Lee, Valerie Wagner BioCyc BioPAX BioCyc ENZYME CMR Genbank BioWarehouse Eco2DBase Oracle (10g) or
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WikiPathways: An Experiment in the Communitybased Curation of Biology PowerPoint PPT Presentation
WikiPathways: An Experiment in the Communitybased Curation of Biology - WikiPathways: An Experiment in the Community-based Curation of Biology. Alex Pico ... Automated scripts 'bots' Curator tools. BioPAX import/export. Web API ...
WikiPathways: An Experiment in the Community-based Curation of Biology. Alex Pico ... Automated scripts 'bots' Curator tools. BioPAX import/export. Web API ...
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Standards and languages in Computational System Biology PowerPoint PPT Presentation
Standards and languages in Computational System Biology - GeneOntology standard and ontology to describe gene function and regulation ... BioPAX ontology and format in OWL (XML) Ontology built using GKB Editor and Prot g ...
GeneOntology standard and ontology to describe gene function and regulation ... BioPAX ontology and format in OWL (XML) Ontology built using GKB Editor and Prot g ...
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Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc PowerPoint PPT Presentation
Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc - Synonyms. Provenance (not yet implemented) OWL DL to enable reasoning ... BioPAX: Synonyms species id='pyruvate' metaid='pyruvate' ...
Synonyms. Provenance (not yet implemented) OWL DL to enable reasoning ... BioPAX: Synonyms species id='pyruvate' metaid='pyruvate' ...
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BiNoM Tutorial PowerPoint PPT Presentation
BiNoM Tutorial - Andrei Zinovyev, Laurence Calzone. UMR U900 INSERM/Institut Curie/Ecole des Mines de Paris ... BiNoM is a plugin for Cytoscape. http://cytoscape.org/ Install ...
Andrei Zinovyev, Laurence Calzone. UMR U900 INSERM/Institut Curie/Ecole des Mines de Paris ... BiNoM is a plugin for Cytoscape. http://cytoscape.org/ Install ...
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Protein Mutations and Pathways in Cancer Toward Modular PowerPoint PPT Presentation
Protein Mutations and Pathways in Cancer Toward Modular - Protein Mutations and Pathways in Cancer Toward Modular
Protein Mutations and Pathways in Cancer Toward Modular
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W3C HCLS Task Force on Drug Safety and Efficacy PowerPoint PPT Presentation
W3C HCLS Task Force on Drug Safety and Efficacy - ... but it cannot be analyzed now because it is inaccessible
... but it cannot be analyzed now because it is inaccessible
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Existing Standards in Systems Biology PowerPoint PPT Presentation
Existing Standards in Systems Biology - PSI standard description of protein interaction data ... Specie (pool of molecules) Reaction. Support for mathematical formulations. Rate law ...
PSI standard description of protein interaction data ... Specie (pool of molecules) Reaction. Support for mathematical formulations. Rate law ...
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W3C HCLS Task Force on Drug Safety and Efficacy PowerPoint PPT Presentation
W3C HCLS Task Force on Drug Safety and Efficacy - Title: CDISC and related initatvies Author: Kerstin Forsberg Last modified by: eric neumann Created Date: 2/8/2006 7:04:20 PM Document presentation format
Title: CDISC and related initatvies Author: Kerstin Forsberg Last modified by: eric neumann Created Date: 2/8/2006 7:04:20 PM Document presentation format
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Cytoscape.org PowerPoint PPT Presentation
Cytoscape.org - Cytoscape.org Cytoscape is a freely-available bioinformatics software platform for visualizing biological networks (e.g. molecular interaction networks) and
Cytoscape.org Cytoscape is a freely-available bioinformatics software platform for visualizing biological networks (e.g. molecular interaction networks) and
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Eric%20Neumann%20Clinical%20Semantic%20Group PowerPoint PPT Presentation
Eric%20Neumann%20Clinical%20Semantic%20Group - Clinical Semantic Group. W3C HCLS chair, MIT Fellow ... cdisc:treatment http://clinic.com/study/T2271/subject ... Bridging Clinical and Genomic Information ...
Clinical Semantic Group. W3C HCLS chair, MIT Fellow ... cdisc:treatment http://clinic.com/study/T2271/subject ... Bridging Clinical and Genomic Information ...
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Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc PowerPoint PPT Presentation
Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc - A data exchange ontology and format for semantic ... speciesRef species='acetyl-CoA'/ speciesRef species='CO2'/ /listOfProducts listOfModifers ...
A data exchange ontology and format for semantic ... speciesRef species='acetyl-CoA'/ speciesRef species='CO2'/ /listOfProducts listOfModifers ...
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A Scale-Out RDF Molecule Store for Distributed Processing of Biomedical Data PowerPoint PPT Presentation
A Scale-Out RDF Molecule Store for Distributed Processing of Biomedical Data - A Scale-Out RDF Molecule Store for Distributed Processing of Biomedical Data Andrew Newman ITEE, University of Queensland *
A Scale-Out RDF Molecule Store for Distributed Processing of Biomedical Data Andrew Newman ITEE, University of Queensland *
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From Bench to Bedside: Applications to Drug Discovery and Development PowerPoint PPT Presentation
From Bench to Bedside: Applications to Drug Discovery and Development - From Bench to Bedside: Applications to Drug Discovery and Development Eric Neumann W3C HCLSIG co-chair Teranode Corporation HCLSIG F2F Cambridge MA
From Bench to Bedside: Applications to Drug Discovery and Development Eric Neumann W3C HCLSIG co-chair Teranode Corporation HCLSIG F2F Cambridge MA
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Networks and Pathways I PowerPoint PPT Presentation
Networks and Pathways I - The Problem of Choice Too Many Databases. Data Exchange Formats ... http://cbio.mskcc.org/prl ... Ongoing wishful thinking about latest new technology. ...
The Problem of Choice Too Many Databases. Data Exchange Formats ... http://cbio.mskcc.org/prl ... Ongoing wishful thinking about latest new technology. ...
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Learning and exploring Life science through the EBI reosurces and tools PowerPoint PPT Presentation
Learning and exploring Life science through the EBI reosurces and tools - Learning and exploring Life science through the EBI reosurces and tools BIOQUEST workshop_2011 Vicky Schneider, EMBL-EBI Training Programme Project leader
Learning and exploring Life science through the EBI reosurces and tools BIOQUEST workshop_2011 Vicky Schneider, EMBL-EBI Training Programme Project leader
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Overview of Biochemical Pathways PowerPoint PPT Presentation
Overview of Biochemical Pathways - Bioinformatics, Vol. 19 Suppl. 1 2003, pages i331 i339. Yizhar Regev ... Bioinformatics, Vol. 17 no.9, 829-837. Problem 1. No graphical modelers can represent ...
Bioinformatics, Vol. 19 Suppl. 1 2003, pages i331 i339. Yizhar Regev ... Bioinformatics, Vol. 17 no.9, 829-837. Problem 1. No graphical modelers can represent ...
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Overview PowerPoint PPT Presentation
Overview - Currently, not much overlap between published interaction datasets. Most confidence given to observed interactions with other supporting evidence. ...
Currently, not much overlap between published interaction datasets. Most confidence given to observed interactions with other supporting evidence. ...
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Semantic Aggregation, Integration, and Inference of Pathway Data PowerPoint PPT Presentation
Semantic Aggregation, Integration, and Inference of Pathway Data - Bridging Chemistry and Molecular Biology. Uniprot:P49841 ... E.g. Reaction, Molecular Association, Catalysis. Physical Entity ...
Bridging Chemistry and Molecular Biology. Uniprot:P49841 ... E.g. Reaction, Molecular Association, Catalysis. Physical Entity ...
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Semantic Aggregation, Integration, and Inference of Pathway Data PowerPoint PPT Presentation
Semantic Aggregation, Integration, and Inference of Pathway Data - This file lists all chemical reactions in the PGDB. Attributes: UNIQUE ... 5. Identify biological and chemical properties and disease associations of biomarker ...
This file lists all chemical reactions in the PGDB. Attributes: UNIQUE ... 5. Identify biological and chemical properties and disease associations of biomarker ...
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CellDesigner%20Tutorial PowerPoint PPT Presentation
CellDesigner%20Tutorial - Allows an exchange with other modeling tools. Install and Start CellDesigner ... Grid Snap On or OFF indicated here. Search Database by Notes: PubMed: PMID: 123456 ...
Allows an exchange with other modeling tools. Install and Start CellDesigner ... Grid Snap On or OFF indicated here. Search Database by Notes: PubMed: PMID: 123456 ...
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Protein Pathways and Pathway Databases PowerPoint PPT Presentation
Protein Pathways and Pathway Databases - All pathways are networks of interactions, however not all networks are ... Chemical substructure comparison. Enzymes,Transcription Factors. Genes: Blast search ...
All pathways are networks of interactions, however not all networks are ... Chemical substructure comparison. Enzymes,Transcription Factors. Genes: Blast search ...
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Amarnath Gupta PowerPoint PPT Presentation
Amarnath Gupta - Some Description Logics like SHOQ(D)1, a progenitor of OWL, allow: ... The Big Picture. How do organisms communicate with their environment? ...
Some Description Logics like SHOQ(D)1, a progenitor of OWL, allow: ... The Big Picture. How do organisms communicate with their environment? ...
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Interactions and Ontologies PowerPoint PPT Presentation
Interactions and Ontologies - BRENDA. BRITE - Biomolecular Relations in Information Transmission and Expression ... Fields S. Song O. Nature. 1989 Jul 20;340(6230):245-6. PMID: 2547163 ...
BRENDA. BRITE - Biomolecular Relations in Information Transmission and Expression ... Fields S. Song O. Nature. 1989 Jul 20;340(6230):245-6. PMID: 2547163 ...
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BioUML PowerPoint PPT Presentation
BioUML - BioUML integrated platform for systems biology: From gene regulatory networks to modeling virtual cell and virtual physiological human Fedor Kolpakov
BioUML integrated platform for systems biology: From gene regulatory networks to modeling virtual cell and virtual physiological human Fedor Kolpakov
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Interactions and Ontologies PowerPoint PPT Presentation
Interactions and Ontologies - BRENDA. BRITE - Biomolecular Relations in Information Transmission and Expression ... Fields S. Song O. Nature. 1989 Jul 20;340(6230):245-6. PMID: 2547163 ...
BRENDA. BRITE - Biomolecular Relations in Information Transmission and Expression ... Fields S. Song O. Nature. 1989 Jul 20;340(6230):245-6. PMID: 2547163 ...
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W3C HCLS Task Force on Drug Safety and Efficacy PowerPoint PPT Presentation
W3C HCLS Task Force on Drug Safety and Efficacy - Inferred (proposed) Disease state. Patient Classification / Segmentation ... Dr. Janet Woodcock, Deputy Commissioner for Operations and Chief Operating Officer, FDA ...
Inferred (proposed) Disease state. Patient Classification / Segmentation ... Dr. Janet Woodcock, Deputy Commissioner for Operations and Chief Operating Officer, FDA ...
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Overview PowerPoint PPT Presentation
Overview - Overview Introduction Biological network data Text mining Gene Ontology Expression data basics Expression, text mining, and GO Modules and complexes
Overview Introduction Biological network data Text mining Gene Ontology Expression data basics Expression, text mining, and GO Modules and complexes
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The Cancer Biomedical Informatics Grid PowerPoint PPT Presentation
The Cancer Biomedical Informatics Grid - The Cancer Biomedical Informatics Grid (caBIG ): Overview of the Integrative Cancer Research Workspace ... U Iowa Translational Tools Tom Moloshok, ...
The Cancer Biomedical Informatics Grid (caBIG ): Overview of the Integrative Cancer Research Workspace ... U Iowa Translational Tools Tom Moloshok, ...
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A comprehensive Map of Molecular Interactions in RB Pathway PowerPoint PPT Presentation
A comprehensive Map of Molecular Interactions in RB Pathway - A Comprehensive Map of Molecular Interactions in RB Pathway. Laurence Calzone (1), Am lie Gelay (1), Andrei Zinovyev (1), Fran ois Radvanyi ... Tools and softwares ...
A Comprehensive Map of Molecular Interactions in RB Pathway. Laurence Calzone (1), Am lie Gelay (1), Andrei Zinovyev (1), Fran ois Radvanyi ... Tools and softwares ...
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Protein Interactions PowerPoint PPT Presentation
Protein Interactions - Complexes with unknown stoichiometry. A. Here's another possibility? ... also said to have Unknown Stoichiometry. C. A. Lecture 4.1. 20 ...
Complexes with unknown stoichiometry. A. Here's another possibility? ... also said to have Unknown Stoichiometry. C. A. Lecture 4.1. 20 ...
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A ScaleOut RDF Molecule Store for Distributed Processing of Biomedical Data PowerPoint PPT Presentation
A ScaleOut RDF Molecule Store for Distributed Processing of Biomedical Data - Joint Project between Faculty ITEE and IMB at the University of Queensland and Pfizer. ... Better Metadata better selectivity of data processing. ...
Joint Project between Faculty ITEE and IMB at the University of Queensland and Pfizer. ... Better Metadata better selectivity of data processing. ...
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Pathway Tools Schema and Semantic Inference Layer Genes, Operons, and Replicons PowerPoint PPT Presentation
Pathway Tools Schema and Semantic Inference Layer Genes, Operons, and Replicons - Computing with Pathway/Genome Databases
Computing with Pathway/Genome Databases
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The Cancer Biomedical Informatics Grid PowerPoint PPT Presentation
The Cancer Biomedical Informatics Grid - The Cancer Biomedical Informatics Grid caBIG: Overview of the Integrative Cancer Research Workspace
The Cancer Biomedical Informatics Grid caBIG: Overview of the Integrative Cancer Research Workspace
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NCICB Pathway Interaction Database PowerPoint PPT Presentation
NCICB Pathway Interaction Database - can't propagate hypothesized effect of anomalies ... collapse distinctions among posttranslational mods. collapse graph by removing process nodes ...
can't propagate hypothesized effect of anomalies ... collapse distinctions among posttranslational mods. collapse graph by removing process nodes ...
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Nursery IPM for Insect Control PowerPoint PPT Presentation
Nursery IPM for Insect Control - Several predacious mites are available. Phytosielus persimilis attack red mites ... Several predacious mites. Amblyseius cucumeris & Hypoaspis spp. ...
Several predacious mites are available. Phytosielus persimilis attack red mites ... Several predacious mites. Amblyseius cucumeris & Hypoaspis spp. ...
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Writing Programs that Analyze PathwayGenome Databases PowerPoint PPT Presentation
Writing Programs that Analyze PathwayGenome Databases - Types of Credit: Created, Reviewed, Revised. Home Pages for Authors ... used for Stoichiometry Coefficients, Compartments, Citations, etc. Principal Classes 1 ...
Types of Credit: Created, Reviewed, Revised. Home Pages for Authors ... used for Stoichiometry Coefficients, Compartments, Citations, etc. Principal Classes 1 ...
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BioSigNet: Reasoning and Hypothesizing about Signaling Networks PowerPoint PPT Presentation
BioSigNet: Reasoning and Hypothesizing about Signaling Networks - How can existing knowledge be revised, expanded? Hypothesis formation ... Initial condition I = { intially f } Observation O = { eventually g } (K,I) does not entail O ...
How can existing knowledge be revised, expanded? Hypothesis formation ... Initial condition I = { intially f } Observation O = { eventually g } (K,I) does not entail O ...
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Databases, Ontologies and Text mining Session Introduction Part 1 PowerPoint PPT Presentation
Databases, Ontologies and Text mining Session Introduction Part 1 - The Gene Ontology Categorizer. Joslyn, Mniszewski, Fulmer, Heaton ... Uses an event-based ontology for biological processes. Modelling levels of detail of events ...
The Gene Ontology Categorizer. Joslyn, Mniszewski, Fulmer, Heaton ... Uses an event-based ontology for biological processes. Modelling levels of detail of events ...
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Guest Lecture PowerPoint PPT Presentation
Guest Lecture - Database concepts - what is a 'good' database (DB) How is data stored and ... has open interfaces (APIs) for query requests. Bad DB: ... APIs, Mashups, SQL ...
Database concepts - what is a 'good' database (DB) How is data stored and ... has open interfaces (APIs) for query requests. Bad DB: ... APIs, Mashups, SQL ...
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Nursery IPM for Insect Control PowerPoint PPT Presentation
Nursery IPM for Insect Control - Few insecticides for nursery plants. Scout for problems and keep records ... P. punctum and Amblyseius fallacis attack both red and two-spotted spider mites ...
Few insecticides for nursery plants. Scout for problems and keep records ... P. punctum and Amblyseius fallacis attack both red and two-spotted spider mites ...
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bioinformatics resources for the systemslevel analysis of innate immunity: the innatedb interaction PowerPoint PPT Presentation
bioinformatics resources for the systemslevel analysis of innate immunity: the innatedb interaction - bioinformatics resources for the systemslevel analysis of innate immunity: the innatedb interaction
bioinformatics resources for the systemslevel analysis of innate immunity: the innatedb interaction
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Ontology Alignment state of the art and an application in literature search PowerPoint PPT Presentation
Ontology Alignment state of the art and an application in literature search - Title: PowerPoint Presentation Last modified by: patla Created Date: 1/1/1601 12:00:00 AM Document presentation format: On-screen Show Other titles
Title: PowerPoint Presentation Last modified by: patla Created Date: 1/1/1601 12:00:00 AM Document presentation format: On-screen Show Other titles
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Towards a Complete Covering of SBML Functionalities PowerPoint PPT Presentation
Towards a Complete Covering of SBML Functionalities - kosmopolit s, has been used to describe a wide variety of important views in ... stoichiometry='1.0'/ /listOfReactants kineticLaw ...
kosmopolit s, has been used to describe a wide variety of important views in ... stoichiometry='1.0'/ /listOfReactants kineticLaw ...
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RDB2RDF Use Case Knoesis Center PowerPoint PPT Presentation
RDB2RDF Use Case Knoesis Center - xsl:when test='$currNode='Entrezgene_track- info' ... xsl:attribute name='rdf:parseType' Resource /xsl:attribute /xsl:if Entrez Gene ...
xsl:when test='$currNode='Entrezgene_track- info' ... xsl:attribute name='rdf:parseType' Resource /xsl:attribute /xsl:if Entrez Gene ...
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Introduction and Applications of Microarray Databases PowerPoint PPT Presentation
Introduction and Applications of Microarray Databases - Introduction and Applications of Microarray Databases Chen-hsiung Chan Department of Computer Science and Information Engineering National Taiwan University
Introduction and Applications of Microarray Databases Chen-hsiung Chan Department of Computer Science and Information Engineering National Taiwan University
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Scientific web programming with PHP and MySQL PowerPoint PPT Presentation
Scientific web programming with PHP and MySQL - When you open PHP-documents locally, they look like gibberish; you need a web server to process ... PHP is still easy (not a easy as HTML though) Other ...
When you open PHP-documents locally, they look like gibberish; you need a web server to process ... PHP is still easy (not a easy as HTML though) Other ...
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