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From Bicluster to Tricluster An Alternative Approach PowerPoint PPT Presentation

From Bicluster to Tricluster An Alternative Approach - Bicluster has increased popularity in finding cluster in gene expression data. However this method works well in two ... S. C. Madeira and A. L. Oliveira. ...

Bicluster has increased popularity in finding cluster in gene expression data. However this method works well in two ... S. C. Madeira and A. L. Oliveira. ...

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Comparing Biclustering Algorithms PowerPoint PPT Presentation

Comparing Biclustering Algorithms - ... Algorithms. Todd A. Gibson. University of Colorado Health Sciences Center. Todd.Gibson@UCHSC.edu ... Statistical Algorithmic Method for Bicluster Analysis ...

... Algorithms. Todd A. Gibson. University of Colorado Health Sciences Center. Todd.Gibson@UCHSC.edu ... Statistical Algorithmic Method for Bicluster Analysis ...

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TRICLUSTER: An Effective Algorithm for Mining Coherent Clusters in 3D Microarray Data PowerPoint PPT Presentation

TRICLUSTER: An Effective Algorithm for Mining Coherent Clusters in 3D Microarray Data - ... An Effective Algorithm for Mining Coherent Clusters in 3D ... Construct a graph based on the mined biclusters (as vertices) and get the maximal TRICLUSTERs ...

... An Effective Algorithm for Mining Coherent Clusters in 3D ... Construct a graph based on the mined biclusters (as vertices) and get the maximal TRICLUSTERs ...

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Cluster Analysis of Microarray Expression Data Matrices PowerPoint PPT Presentation

Cluster Analysis of Microarray Expression Data Matrices - Application of cluster analysis techniques in the elucidation gene expression data ... First proposed in: 'Discovering statically significant biclusters in gene ...

Application of cluster analysis techniques in the elucidation gene expression data ... First proposed in: 'Discovering statically significant biclusters in gene ...

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Biclustering of Expression Data PowerPoint PPT Presentation

Biclustering of Expression Data - 4. Methods proposed by this paper. 4.1 Relative Works and paper's goal ... the problem of finding a maximum biclique in a bipartite graph as a special case ...

4. Methods proposed by this paper. 4.1 Relative Works and paper's goal ... the problem of finding a maximum biclique in a bipartite graph as a special case ...

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Biclustering in Gene Expression Datasets PowerPoint PPT Presentation

Biclustering in Gene Expression Datasets - The goal of biology is fully understand how living things function. ... this will lead to a fuller understanding of the whole organism (reductionism) ...

The goal of biology is fully understand how living things function. ... this will lead to a fuller understanding of the whole organism (reductionism) ...

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An Association Analysis Approach to Biclustering - An Association Analysis Approach to Biclustering

An Association Analysis Approach to Biclustering

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Subspace Clustering/Biclustering PowerPoint PPT Presentation

Subspace Clustering/Biclustering - 11. Motivation. DNA microarray analysis. CH1I. CH1B. CH1D. CH2I. CH2B. CTFC3. 4392. 284. 4108 ... the state of the art method in computational biology field ...

11. Motivation. DNA microarray analysis. CH1I. CH1B. CH1D. CH2I. CH2B. CTFC3. 4392. 284. 4108 ... the state of the art method in computational biology field ...

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TRICLUSTER An Effective Algorithm for Mining Coherent Clusters in 3D Microarray Data - TRICLUSTER An Effective Algorithm for Mining Coherent Clusters in 3D Microarray Data Mohammed J. Zaki & Lizhuang Zhao Department of Computer Science,

TRICLUSTER An Effective Algorithm for Mining Coherent Clusters in 3D Microarray Data Mohammed J. Zaki & Lizhuang Zhao Department of Computer Science,

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DB Seminar Series: Biclustering Methods for Microarray Data Analysis PowerPoint PPT Presentation

DB Seminar Series: Biclustering Methods for Microarray Data Analysis - Ben-Dor et al. (OPSM) Background row effect column effect. Lazzeroni & Owen (Plaid Models) ... 10. Cheng and Church. Model: ...

Ben-Dor et al. (OPSM) Background row effect column effect. Lazzeroni & Owen (Plaid Models) ... 10. Cheng and Church. Model: ...

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?-Clusters Capturing Subspace Correlation in a Large Data Set PowerPoint PPT Presentation

?-Clusters Capturing Subspace Correlation in a Large Data Set - ... rate 7 and 3rd viewer rate 9, 2nd viewer probably will like this movie too ... Movie. 3. Movie2. 10/4/09. Data Mining: Concepts and Techniques. 15 ...

... rate 7 and 3rd viewer rate 9, 2nd viewer probably will like this movie too ... Movie. 3. Movie2. 10/4/09. Data Mining: Concepts and Techniques. 15 ...

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Unsupervised learning PowerPoint PPT Presentation

Unsupervised learning - Unsupervised learning & Cluster Analysis: Basic Concepts and Algorithms Assaf Gottlieb Some of the s are taken form Introduction to data mining, by Tan ...

Unsupervised learning & Cluster Analysis: Basic Concepts and Algorithms Assaf Gottlieb Some of the s are taken form Introduction to data mining, by Tan ...

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DNA Chips and Their Analysis Comp. Genomics: Lecture 13 based on many sources, primarily Zohar Yakhini PowerPoint PPT Presentation

DNA Chips and Their Analysis Comp. Genomics: Lecture 13 based on many sources, primarily Zohar Yakhini - ... lecture and Sorin Draghici's book 'Data Analysis Tools for DNA Microarrays' ... to work through this large data set and make sense of the data are desired. ...

... lecture and Sorin Draghici's book 'Data Analysis Tools for DNA Microarrays' ... to work through this large data set and make sense of the data are desired. ...

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Probing the systems biology of Mycobacterium tuberculosis through gene expression and genomic data PowerPoint PPT Presentation

Probing the systems biology of Mycobacterium tuberculosis through gene expression and genomic data - Source: http://staff.vbi.vt.edu/pathport/pathinfo_images ... Operon. Gene Pair (k) (N) (m) (n) ... Bimax Biclustering Operon Overlap ...

Source: http://staff.vbi.vt.edu/pathport/pathinfo_images ... Operon. Gene Pair (k) (N) (m) (n) ... Bimax Biclustering Operon Overlap ...

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APO-SYS workshop on data analysis and pathway charting PowerPoint PPT Presentation

APO-SYS workshop on data analysis and pathway charting - APO-SYS workshop on data analysis and pathway charting. Igor Ulitsky ... Seagull Shavit. Igor Ulitsky. Roded Sharan. Yossi Shiloh. Ron Shamir ...

APO-SYS workshop on data analysis and pathway charting. Igor Ulitsky ... Seagull Shavit. Igor Ulitsky. Roded Sharan. Yossi Shiloh. Ron Shamir ...

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EXPression ANalyzer and DisplayER PowerPoint PPT Presentation

EXPression ANalyzer and DisplayER - EXPression ANalyzer and DisplayER. Adi Maron-Katz. Igor Ulitsky. Chaim Linhart ... Seagull Shavit. Roded Sharan. Israel Steinfeld. Yossi Shiloh. Ron Shamir ...

EXPression ANalyzer and DisplayER. Adi Maron-Katz. Igor Ulitsky. Chaim Linhart ... Seagull Shavit. Roded Sharan. Israel Steinfeld. Yossi Shiloh. Ron Shamir ...

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The Properties of Protein-Protein Interaction Networks and Its Use in Protein Function and Protein Complex Prediction PowerPoint PPT Presentation

The Properties of Protein-Protein Interaction Networks and Its Use in Protein Function and Protein Complex Prediction - Course Name: Systems Biology Conducted by-Shigehiko kanaya & Md. Altaf-Ul-Amin

Course Name: Systems Biology Conducted by-Shigehiko kanaya & Md. Altaf-Ul-Amin

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Mining Biological Data PowerPoint PPT Presentation

Mining Biological Data - Each object or attribute in a coherent cluster may bear some relative bias (that ... Strategy: find the maximum coherent attribute sets for each pair of objects with ...

Each object or attribute in a coherent cluster may bear some relative bias (that ... Strategy: find the maximum coherent attribute sets for each pair of objects with ...

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Overlapping Matrix Pattern Visualization: a Hypergraph Approach PowerPoint PPT Presentation

Overlapping Matrix Pattern Visualization: a Hypergraph Approach - Relationship between matrix visualization cost and hypergraph cost ... environment to allow users to focus on different parts of the data and patterns. ...

Relationship between matrix visualization cost and hypergraph cost ... environment to allow users to focus on different parts of the data and patterns. ...

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Mapping Mutations Patterns in the HIV DNA PowerPoint PPT Presentation

Mapping Mutations Patterns in the HIV DNA - Mapping Mutations Patterns in the HIV DNA By Nimrod Bar-Yaakov nimrod-b@orbotech.com With co-operation of Dr. Zehava Grossman of the Israel s Multi-Center AIDS ...

Mapping Mutations Patterns in the HIV DNA By Nimrod Bar-Yaakov nimrod-b@orbotech.com With co-operation of Dr. Zehava Grossman of the Israel s Multi-Center AIDS ...

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BiClustering II PowerPoint PPT Presentation

BiClustering II - Each object or attribute in a coherent cluster may bear some relative bias (that ... Strategy: find the maximum coherent attribute sets for each pair of objects with ...

Each object or attribute in a coherent cluster may bear some relative bias (that ... Strategy: find the maximum coherent attribute sets for each pair of objects with ...

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Gene Expression Data Analysis - Gene Expression Data Analysis

Gene Expression Data Analysis

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Ambiguous Frequent Itemset Mining and Polynomial Delay Enumeration PowerPoint PPT Presentation

Ambiguous Frequent Itemset Mining and Polynomial Delay Enumeration - dense substructures: clustering, community discovering... homology search on genome ... finding one such dense substructure. ambiguity on the transaction set ...

dense substructures: clustering, community discovering... homology search on genome ... finding one such dense substructure. ambiguity on the transaction set ...

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Similarity and Dissimilarity ,Biclustering PowerPoint PPT Presentation

Similarity and Dissimilarity ,Biclustering, multiview clustering ,K-mean clustering ,K- meloids clustering

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Cluster analysis for microarray data PowerPoint PPT Presentation

Cluster analysis for microarray data - Genes and experiments/samples are given as the row and ... Even 'random' data with no structure can yield clusters or exhibit interesting looking patterns. ...

Genes and experiments/samples are given as the row and ... Even 'random' data with no structure can yield clusters or exhibit interesting looking patterns. ...

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Data%20Mining:%20%20Concepts%20and%20Techniques PowerPoint PPT Presentation

Data%20Mining:%20%20Concepts%20and%20Techniques - ... A join path, e.g., Student ... Construct a partition of a database D of n objects into a set of k ... Density Based Spatial Clustering of Applications with Noise ...

... A join path, e.g., Student ... Construct a partition of a database D of n objects into a set of k ... Density Based Spatial Clustering of Applications with Noise ...

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Approaches - Slide 1

Slide 1

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L2 and L1 Criteria for K-Means Bilinear Clustering PowerPoint PPT Presentation

L2 and L1 Criteria for K-Means Bilinear Clustering - Tom Sawyer. Outline. Clustering: general and K-Means. Bilinear PCA model and clustering ... Tom Sawyer. 1. 2. 3. iK-Means: Anomalous clusters K-means ...

Tom Sawyer. Outline. Clustering: general and K-Means. Bilinear PCA model and clustering ... Tom Sawyer. 1. 2. 3. iK-Means: Anomalous clusters K-means ...

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Unsupervised clustering in mRNA expression profiles PowerPoint PPT Presentation

Unsupervised clustering in mRNA expression profiles - Unsupervised clustering in mRNA expression profiles ... calculate proportion of overlap for each window. ... Unsupervised clustering in mRNA expression profiles

Unsupervised clustering in mRNA expression profiles ... calculate proportion of overlap for each window. ... Unsupervised clustering in mRNA expression profiles

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?.???????? - Title: Author: Gelfand Last modified by: Gelfand Created Date: 8/28/2005 3:05:07 PM Document presentation format

Title: Author: Gelfand Last modified by: Gelfand Created Date: 8/28/2005 3:05:07 PM Document presentation format

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Course Module: Brief Introduction to Systems Biology Sven Bergmann Department of Medical Genetics Un PowerPoint PPT Presentation

Course Module: Brief Introduction to Systems Biology Sven Bergmann Department of Medical Genetics Un - J Ihmels, G Friedlander, SB, O Sarig, Y Ziv & N Barkai Nature Genetics (2002) Trip to the 'Amazon' ... scale expression data bears great potential to understand ...

J Ihmels, G Friedlander, SB, O Sarig, Y Ziv & N Barkai Nature Genetics (2002) Trip to the 'Amazon' ... scale expression data bears great potential to understand ...

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Presenting and Understanding Data PowerPoint PPT Presentation

Presenting and Understanding Data - Main source: The Visual Display of Quantitative Information, by ... Control for visual illusions, e.g. by showing random data. Lying/distorting with graphics ...

Main source: The Visual Display of Quantitative Information, by ... Control for visual illusions, e.g. by showing random data. Lying/distorting with graphics ...

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Optimization-Based Data Mining Approaches in Neuroscience Research PowerPoint PPT Presentation

Optimization-Based Data Mining Approaches in Neuroscience Research - References Feature Selection for Consistent Biclustering via Fractional 0-1 Programming (with Stanislav Busygin and Oleg A. Prokopyev), Journal of ...

References Feature Selection for Consistent Biclustering via Fractional 0-1 Programming (with Stanislav Busygin and Oleg A. Prokopyev), Journal of ...

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CSCBB 545 Data Mining Spectral Methods PCA,SVD PowerPoint PPT Presentation

CSCBB 545 Data Mining Spectral Methods PCA,SVD - Singular value decomposition for genome-wide expression data processing and modeling. ... Scree diagram: Adapted from http://myweb.dal.ca/~hwhitehe/BIOL4062/pca.ppt ...

Singular value decomposition for genome-wide expression data processing and modeling. ... Scree diagram: Adapted from http://myweb.dal.ca/~hwhitehe/BIOL4062/pca.ppt ...

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BiClustering PowerPoint PPT Presentation

BiClustering - 11. The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL. Motivation ... found via the state of the art method in computational biology field is 12.54 ...

11. The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL. Motivation ... found via the state of the art method in computational biology field is 12.54 ...

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Cluster analysis for microarray data - Clustering may be applied either to genes or ... Sauerbraten. 7. 23. 12. 35. 11. 9. 19. 18. 11. Microarray experiment. Genes. Experimental. condition ...

Clustering may be applied either to genes or ... Sauerbraten. 7. 23. 12. 35. 11. 9. 19. 18. 11. Microarray experiment. Genes. Experimental. condition ...

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From Text Data Mining to Gene Data Mining and Back Again PowerPoint PPT Presentation

From Text Data Mining to Gene Data Mining and Back Again - Bipartite Spectral Based Clustering ... The Document Word Bipartite Model ... Iteratively use the bipartite bipartition methodology to obtain a multipartition ...

Bipartite Spectral Based Clustering ... The Document Word Bipartite Model ... Iteratively use the bipartite bipartition methodology to obtain a multipartition ...

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Biclustering Gene Expression Data Using The Simulated Annealing Search Technique PowerPoint PPT Presentation

Biclustering Gene Expression Data Using The Simulated Annealing Search Technique - Our DNA is divided into distinct regions know as genes. ... Further investigation warranted. Increase temperature. Gene B. Gene C. Gene D. Gene E ...

Our DNA is divided into distinct regions know as genes. ... Further investigation warranted. Increase temperature. Gene B. Gene C. Gene D. Gene E ...

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Taehyun Hwang and Yungil Kim PowerPoint PPT Presentation

Taehyun Hwang and Yungil Kim - Log-likelihood additive score complete bipartite sub-graphs ... A weighted bipartite graph G. Finding heavy subgraphs (statistically significant modules) ...

Log-likelihood additive score complete bipartite sub-graphs ... A weighted bipartite graph G. Finding heavy subgraphs (statistically significant modules) ...

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DB Seminar Series: Semisupervised Projected Clustering PowerPoint PPT Presentation

DB Seminar Series: Semisupervised Projected Clustering - ... a small amount of domain knowledge available (e.g. the functions ... is no way to utilize the domain knowledge that is accessible (active learning v. ...

... a small amount of domain knowledge available (e.g. the functions ... is no way to utilize the domain knowledge that is accessible (active learning v. ...

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Inference of Regulatory Networks via Systems Genetics PowerPoint PPT Presentation

Inference of Regulatory Networks via Systems Genetics - Measure DNA sequence polymorphisms on a group of related ... Penalization ... Penalized Canonical Correlation Analysis (CCA) Represent CCA in ...

Measure DNA sequence polymorphisms on a group of related ... Penalization ... Penalized Canonical Correlation Analysis (CCA) Represent CCA in ...

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MATISSE Modular Analysis for Topology of Interactions and Similarity SEts PowerPoint PPT Presentation

MATISSE Modular Analysis for Topology of Interactions and Similarity SEts - MATISSE - Modular Analysis for Topology of Interactions and ... Microarray data analysis. Input: expression levels of (all) genes in ... network analysis ...

MATISSE - Modular Analysis for Topology of Interactions and ... Microarray data analysis. Input: expression levels of (all) genes in ... network analysis ...

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Analysis of Microarray Data Using EXPANDER and SHARP PowerPoint PPT Presentation

Analysis of Microarray Data Using EXPANDER and SHARP - 2. Intensity-dependent normalization (Yang, Speed) (Lowess local ... Global normalization cannot remove intensity-dependent biases. 3. Quantile Normalization ...

2. Intensity-dependent normalization (Yang, Speed) (Lowess local ... Global normalization cannot remove intensity-dependent biases. 3. Quantile Normalization ...

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Unsupervised clustering in mRNA expression profiles - Computational Intelligence Laboratory (CILAB), Department of Mathematics, ... PCA and scree plot to reduce features. Poor Performance. Hybrid PCA and UKW method ...

Computational Intelligence Laboratory (CILAB), Department of Mathematics, ... PCA and scree plot to reduce features. Poor Performance. Hybrid PCA and UKW method ...

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Correlating Summarization of Multisource News with KWay Graph Biclustering PowerPoint PPT Presentation

Correlating Summarization of Multisource News with KWay Graph Biclustering - The Mutual Reinforcement Principle. K-way Graph Bi-clustering. Experiment ... First:prepossess. Tokenizing?stop words removing?stemming ...

The Mutual Reinforcement Principle. K-way Graph Bi-clustering. Experiment ... First:prepossess. Tokenizing?stop words removing?stemming ...

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AI - Patented multistrategy constructive induction algorithm. Privately held and profitable. ... absorption, distribution, metabolism, excretion, and toxicity ...

Patented multistrategy constructive induction algorithm. Privately held and profitable. ... absorption, distribution, metabolism, excretion, and toxicity ...

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Mining Coherent Gene Clusters A Modified Approach PowerPoint PPT Presentation

Mining Coherent Gene Clusters A Modified Approach - Wang H., et al. Clustering by Pattern Similarity in Large Data Sets. In SIGMOD 2002. ... Advanced Applications (DASFAA'05), April 18-20, 2005, Beijing, China. ...

Wang H., et al. Clustering by Pattern Similarity in Large Data Sets. In SIGMOD 2002. ... Advanced Applications (DASFAA'05), April 18-20, 2005, Beijing, China. ...

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PROTERAN: - http://genome.tugraz.at/Software/GenesisCenter.html ... Using a Landscape Metaphor to solve our requirements ... a manual layout design described next. 45 ...

http://genome.tugraz.at/Software/GenesisCenter.html ... Using a Landscape Metaphor to solve our requirements ... a manual layout design described next. 45 ...

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Probation Talk: On Mining Microarray data by OrderPreserving Submatrix PowerPoint PPT Presentation

Probation Talk: On Mining Microarray data by OrderPreserving Submatrix - ... clustering methods that focus on grouping objects with similar values on a set of dimensions ... Group together data points that are close or similar to ...

... clustering methods that focus on grouping objects with similar values on a set of dimensions ... Group together data points that are close or similar to ...

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Sound Mathematical Foundation and Modification of TRICLUSTER PowerPoint PPT Presentation

Sound Mathematical Foundation and Modification of TRICLUSTER - ... such as feature based clustering, graph based clustering and pattern based clustering. ... let. A three dimensional microarray dataset is a real-valued ...

... such as feature based clustering, graph based clustering and pattern based clustering. ... let. A three dimensional microarray dataset is a real-valued ...

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Bicluster PowerPoint PPT Presentations