Cryo-EM Dictionary Proposal--March 2005

1
Cryo-EM Dictionary Proposal--March 2005
This is a proposed dictionary of data items
describing cryo-EM experiment and structure that
has been developed as a collaboration between the
Computational Center for Biomolecular Complexes
(C2BC) and the RCSB Protein Data Bank
(RCSB-PDB). History Oct. 2004 At the
Cryo-Electron Microscopy Structure Deposition
Workshop held at the Protein Data Bank in
Piscataway, NJ, the current cryo-EM CIF
dictionary, mmcif_iims dictionary v.002 (4/2004),
was reviewed. Recommendations of experts in the
cryo-EM field for desired definitions were
obtained. Dec. 2004 In response to these
recommendations, a revised dictionary was
prepared mmcif_iims dictionary v.005 (12/2004).
The revisions were originally encoded by Kim
Henrick and subsequently revised by John
Westbrook and Matthew Baker. Feb 2005 The
v.005 dictionary was carefully reviewed by Cathy
Lawson and Matt Baker, and additional changes
were recommended. This powerpoint presentation
summarizes the resulting dictionary proposal.
All changes from the v.002 (4/2004) dictionary
are highlighted according to the key presented on
the following page.
2
KEY
Changes relative to mmcif_iims cryo-EM dictionary
version 002, 4/2004 are indicated as follows
em_sample_preparation
_em_sample_preparation.support_id
_em_sample_preparation.solution_id (V002 em_sample_preparation.buffer_id)
_em_sample_preparation.details
Existing category Existing data item Renamed data
item (version old name) New data item
Most data items are hyperlinked to their web page
definitions
em_solution_composition (V002 em_buffer)
_em_solution_composition.id
_em_solution_composition.name
Renamed category (all data items under category
header are also renamed)
em_single_particle
_em_single_particle.id
_em_single_particle.point_group_symmetry
New category (all data items under category
header are also new)
3
Overview
Experimental
EM
Sample Description
EM Data Collection
em_imaging
Biochemical Sample Preparation
EM Specimen Preparation
em_entry
em_detector
em_assembly
em_sample_preparation
em_vitrification
em_microscope
em_entity_assembly
em_sample_support
em_stain
em_image_scans
em_entity_assembly_list
em_array_formation
em_cryo_stain
em_micrographs
em_virus_entity
em_solution_composition
em_embedding_agent
em_electron_diffraction
em_icos_virus_shells
em_electron_diffraction_phase
em_single_particle
Image Processing
em_electron_diffraction_pattern
em_filaments
em_singleparticle_selection
Structure Analysis
em_2d_crystal
em_3d_reconstruction
em_3d_fitting
em_particle_picking
em_3d_fitting_list
Map Description
em_particle_picking_list
em_classes
em_filament_selection
em_refinement
Computational
em_filament_reconstruction
em_fsc_curve
4
Sample Description overall
EM
EM
em_assembly
_em_assembly.id
_em_assembly.entry_id
_em_assembly.name
_em_assembly.aggregation_state
_em_assembly.details
_em_assembly.num_components
em_entity_assembly
_em_entity_assembly.id
_em_entity_assembly.assembly_id
_em_entity_assembly.type
_em_entity_assembly.name
_em_entity_assembly.details
_em_entity_assembly.ebi_organism_scientific
_em_entity_assembly.ebi_organism_common
_em_entity_assembly.ebi_strain
_em_entity_assembly.ebi_tissue
_em_entity_assembly.ebi_cell
_em_entity_assembly.ebi_organelle
_em_entity_assembly.ebi_cellular_location
_em_entity_assembly.ebi_engineered
_em_entity_assembly.ebi_expression_system
_em_entity_assembly.ebi_expression_system_plasmid
_em_entity_assembly.go_id
_em_entity_assembly.ipr_id
_em_entity_assembly.synonym
em_entry
_em_entry.id
Sample Description
em_entry
em_assembly
em_entity_assembly
em_entity_assembly_list
em_virus_entity
em_icos_virus_shells
em_entity_assembly_list
_em_entity_assembly_list.id
_em_entity_assembly_list.entity_id
_em_entity_assembly_list.entity_assembly_id
_em_entity_assembly_list.details (v002 em_entity_assembly_list.oligomeric details)
_em_entity_assembly_list.number_of_copies
_em_entity_assembly_list.mol_wt (v005 em_entity_assembly_list.mol_wt_exp) (v005 em_entity_assembly_list.mol_wt_theo)
_em_entity_assembly_list.mol_wt_method
em_single_particle
em_filaments
em_2d_crystal
5
Sample Description types
EM
em_virus_entity
_em_virus_entity.id
_em_virus_entity.virus_host_category
_em_virus_entity.virus_host_species
_em_virus_entity.virus_host_growth_cell
_em_virus_entity.virus_type
_em_virus_entity.virus_isolate
_em_virus_entity.ictvdb_id
_em_virus_entity.entity_assembly_id
_em_virus_entity.enveloped
_em_virus_entity.empty
em_single_particle
_em_single_particle.id
_em_single_particle.entry_id
_em_single_particle.point_group_symmetry
_em_single_particle.details
_em_single_particle.local_symmetry_detail
Sample Description
em_2d_crystal (not yet encoded in CIF dictionary)
em_2D_crystal.id                          
em_2D_crystal.entry_id 
em_2D_crystal.space_group_name_H-M
em_2D_crystal.space_group_number
em_2D_crystal.cell_setting 
em_2D_crystal.plane
em_2D_crystal.thickness 
em_2D_crystal.cell_length_a  
em_2D_crystal.cell_length_b  
em_2D_crystal.cell_length_c
em_2D_crystal.cell_angle_alpha
em_2D_crystal.cell_angle_beta 
em_2D_crystal.cell_angle_gamma 
em_2D_crystal.details
em_2D_crystal.local_symmetry_details
em_entry
em_assembly
em_entity_assembly
em_entity_assembly_list
em_filament
_em_filaments.id
_em_filaments.entry_id
_em_filaments.details
_em_filaments.delta_phi
_em_filaments.delta_z
_em_filaments.dyad
_em_filaments.axial_symmetry
_em_filaments.helical_family
_em_filaments.helical_pitch
_em_filaments.subunits_helix_turn
_em_filaments.axial_rise_subunit
em_virus_entity
em_icos_virus_shells
em_single_particle
em_icos_virus_shells
_em_icos_virus_shells.virus_entity_id
_em_icos_virus_shells.id
_em_icos_virus_shells.shell_diameter
_em_icos_virus_shells.triangulation_num
em_filaments
em_2d_crystal

6
Biochemical Sample Preparation
EM
em_sample_support
_em_sample_support.id
_em_sample_support.film_material
_em_sample_support.method
_em_sample_support.grid_material
_em_sample_support.grid_mesh_size
_em_sample_support.grid_type
_em_sample_support.pretreatment
_em_sample_support.details
_em_sample_support.citation_id
em_solution_composition (v002 em_buffer em_buffer_components)
_em_solution_composition.id
_em_solution_composition.name
_em_solution_composition.pH
_em_solution_composition.details (v002 em_buffer_components.details)
em_array_formation(v002 em_2d_crystal_grow)
_em_array_formation.id
_em_array_formation.type
_em_array_formation.method
_em_array_formation.apparatus
_em_array_formation.atmosphere
_em_array_formation.pH
_em_array_formation.temp
_em_array_formation.time
_em_array_formation.solution_id (v002 em_2d_crystal_grow.buffer_id)
_em_array_formation.details
_em_array_formation.citation_id
_em_array_formation.buffer_id
em_sample_preparation
_em_sample_preparation.pdb_entry_id
_em_sample_preparation.entry_id
_em_sample_preparation.id
_em_sample_preparation.details
_em_sample_preparation.ph
_em_sample_preparation.solution_id (v002 em_sample_preparation.buffer_id)
_em_sample_preparation.sample_concentration
_em_sample_preparation.array_formation_id (v002 em_sample_preparation.2d_crystal_grow_id)
_em_sample_preparation.support_id
7
EM Specimen Preparation
EM
em_vitrification
_em_vitrification.entry_id
_em_vitrification.id
_em_vitrification.sample_preparation_id
_em_vitrification.cryogen_name
_em_vitrification.humidity
_em_vitrification.temp
_em_vitrification.instrument
_em_vitrification.protocol (V002 em_vitrification.method)
_em_vitrification.time_resolved_state
_em_vitrification.citation_id
_em_vitrification.details
em_stain
_em_stain.id
_em_stain.entry_id
_em_stain.details
_em_stain.citation
_em_stain.protocol
_em_stain.time_resolved_state
_em_stain.temperature
_em_stain.humidity
_em_stain.type
_em_stain.instrument
_em_stain.sample_preparation_id
em_cryo_stain
_em_cryo_stain.id
_em_cryo_stain.entry_id
_em_cryo_stain.cryo_flag
_em_cryo_stain.details
_em_cryo_stain.citation
_em_cryo_stain.protocol
_em_cryo_stain.time_resolved_state
_em_cryo_stain.cryogen_name
_em_cryo_stain.temperature
_em_cryo_stain.humidity
_em_cryo_stain.type
_em_cryo_stain.instrument
_em_cryo_stain.sample_preparation_id
EM Specimen Preparation
em_vitrification
em_stain
em_cryo_stain
em_embedding_agent
em_embedding_agent
_em_embedding_agent.id
_em_embedding_agent.entry_id
_em_embedding_agent.type
_em_embedding_agent.details
_em_embedding_agent.citation
_em_embedding_agent.temperature
_em_embedding_agent.time_resolved
8
EM Data Collection imagescans, micrographs
EM
EM Data Collection
em_image_scans
_em_image_scans.entry_id
_em_image_scans.id
_em_image_scans.details
_em_image_scans.scanner_model
_em_image_scans.step_size (V002 em_image_scans.sampling_size)
_em_image_scans.od_range
_em_image_scans.bits_per_pixel (V002 em_image_scans.quant_bit_size)
_em_image_scans.citation_id
_em_image_scans.spot_size
em_micrographs
_em_micrographs.image_id
_em_micrographs.entry_id
_em_micrographs.microscope_id
_em_micrographs.specimen_id
_em_micrographs.astigmatism_flag
_em_micrographs.circular_averaging_flag
_em_micrographs.image_filter
_em_micrographs.edge_threshold
_em_micrographs.power_factor
_em_micrographs.averaging_overlap
_em_micrographs.field_size
_em_micrographs.nominal_defocus
_em_micrographs.refined_defocus_estimate
_em_micrographs.amplitude_contrast
_em_micrographs.astigmatism_ratio
_em_micrographs.correction_type
_em_micrographs.experiment_mode
_em_particle_picking.micrograph_id
_em_particle_picking_list.micrograph_id
em_imaging
em_detector
em_microscope
em_image_scans
em_micrographs
em_electron_diffraction
em_electron_diffraction_phase
em_electron_diffraction_pattern

9
EM Data Collection apparatus
EM
em_detector
_em_detector.entry_id
_em_detector.pdb_entry_id
_em_detector.id
_em_detector.details
_em_detector.type
_em_detector.pixel_size
_em_detector.film_processing_conditions
_em_detector.exposure_time
_em_detector.exposure_type
_em_detector.binning_x
_em_detector.binning_y
_em_detector.offset_x
_em_detector.offset_y
_em_detector.dimension_x
_em_detector.dimension_y
_em_detector.speed
EM Data Collection
em_imaging
_em_imaging.entry_id
_em_imaging.pdb_entry_id
_em_imaging.id
_em_imaging.sample_support_id
_em_imaging.detector_id
_em_imaging.scans_id
_em_imaging.microscope_id
_em_imaging.specimen_holder_model
_em_imaging.details
_em_imaging.accelerating_voltage
_em_imaging.illumination_mode
_em_imaging.mode
_em_imaging.nominal_cs
_em_imaging.nominal_defocus_min
_em_imaging.nominal_defocus_max
_em_imaging.tilt_angle_min
_em_imaging.tilt_angle_max
_em_imaging.nominal_magnification
_em_imaging.calibrated_magnification
_em_imaging.electron_source
_em_imaging.electron_dose
_em_imaging.electron_dose_range
_em_imaging.energy_filter
_em_imaging.energy_window
_em_imaging.citation_id
_em_imaging.temperature
_em_imaging.diffraction_camera_length (V002 em_imaging.detector_distance)
_em_imaging.condenser_aperture
_em_imaging.spot_size
_em_imaging.objective_aperture
_em_imaging.selective_aperture
_em_imaging.imaging_cryogen
em_imaging
em_detector
em_microscope
em_image_scans
em_micrographs
em_electron_diffraction
em_electron_diffraction_phase
em_electron_diffraction_pattern
em_microscope
_em_microscope.id
_em_microscope.model (V002 em_imaging.microscope_model)

10
EM Data Collection electron diffraction
EM
EM Data Collection
em_electron_diffraction
_em_electron_diffraction.entry_id
_em_electron_diffraction.id
_em_electron_diffraction.num_structure_factors
_em_electron_diffraction.num_diff_patterns
_em_electron_diffraction.details
em_electron_diffraction_pattern
_em_electron_diffraction_pattern.entry_id
_em_electron_diffraction_pattern.id
_em_electron_diffraction_pattern.num_patterns_by_tilt_angle
_em_electron_diffraction_pattern.num_images_by_tilt_angle
_em_electron_diffraction_pattern.tilt_angle
em_imaging
em_detector
em_microscope
em_image_scans
em_micrographs
em_electron_diffraction_phase
_em_electron_diffraction_phase.entry_id
_em_electron_diffraction_phase.id
_em_electron_diffraction_phase.d_res_high
_em_electron_diffraction_phase.residual
_em_electron_diffraction_phase.highest_resolution_shell_error
_em_electron_diffraction_phase.overall_error
_em_electron_diffraction_phase.rejection_criteria_error
em_electron_diffraction
em_electron_diffraction_phase
em_electron_diffraction_pattern


11
Image Processing selection, reconstruction
EM
em_singleparticle_selection (v002 em_2d_projection_selection) (v005em_2d_singleparticle_selection)
_em_singleparticle_selection.entry_id
_em_single_particle_selection.num_micrographs (V005 em_single_particles.num_micrographs)
_em_singleparticle_selection.num_particles
_em_singleparticle_selection.protocol (V002 em_2d_projection_selection.software_name)
_em_singleparticle_selection.citation_id
em_3d_reconstruction
_em_3d_reconstruction.entry_id
_em_3d_reconstruction.id
_em_3d_reconstruction.num_particles
_em_3d_reconstruction.num_asymmetric_units (V005 em_2d_singleparticles.num_asymmetric_units)
_em_3d_reconstruction.method_details (V002 em_3d_reconstruction.method)
_em_3d_reconstruction.citation_id
_em_3d_reconstruction.resolution
_em_3d_reconstruction.resolution_method_details (V002 em_3d_reconstruction.resolution_method)
_em_3d_reconstruction.amplitude_correction_details
_em_3d_reconstruction.ctf_correction_method_details (V002 em_3d_reconstruction.ctf_correction_method)
_em_3d_reconstruction.voxel_size_x
_em_3d_reconstruction.voxel_size_y
_em_3d_reconstruction.voxel_size_z
We are proposing to remove 2d from this
category name to prevent confusion with 2d
crystals
Image Processing

em_singleparticle_selection
em_3d_reconstruction
em_particle_picking

em_particle_picking_list
em_filaments_selection
em_filaments_reconstruction
12
Image Processing particle picking
EM
em_particle_picking
_em_particle_picking.entry_id
_em_particle_picking.pre_processing_filters_details
_em_particle_picking.citation
_em_particle_picking.correlation_threshold
_em_particle_picking.local_maxima_radius
_em_particle_picking.grow_threshold
_em_particle_picking.min_radius
_em_particle_picking.max_radius
em_particle_picking_list
_em_particle_picking_list.id
_em_particle_picking_list.class_id
_em_particle_list.used_in_map_flag
_em_particle_list.pixel_x_origin
_em_particle_list.pixel_y_origin
_em_particle_list.radius
_em_particle_list.alignment_shift_x
_em_particle_list.alignment_shift_y
_em_particle_list.alignment_rotation_phi
_em_particle_list.correlation_flag
_em_particle_list.noise_image_flag
_em_particle_list.particle_template_flag
_em_particle_list.symmetric_mask_flag
_em_particle_list.3d_volume
_em_particle_list.interpolation_factor
_em_particle_list.peak_separation_distance
_em_particle_list.phi
_em_particle_list.theta
_em_particle_list.psi
_em_particle_picking.details
_em_particle_picking.method
_em_particle_picking.centering_method
_em_particle_picking_list.entry_id
Image Processing

em_singleparticle_selection
em_3d_reconstruction
em_particle_picking
em_particle_picking_list
em_filaments_selection
em_filaments_reconstruction
13
Image Processing filaments
EM
em_filaments_selection (v005 em_filaments)
_em_filaments_selection.num_unit_cells
_em_filaments_selection.num_filaments_used
_em_filaments_selection.box_criteria
_em_filaments_selection.straightening_details
_em_filaments_selection.selection_rule
em_filaments_reconstruction (v005 em_filaments)
_em_filaments_reconstruction.correction_details
_em_filaments_reconstruction.layer_line_details
_em_filaments_reconstruction.average_phase_residual
_em_filaments reconstruction.map_symmetry_id
_em_filaments_reconstruction.number_datasets
_em_filaments_reconstruction.diameter_tubes
_em_filaments_reconstruction.layerline_resolution
_em_filaments_reconstruction.number_layerlines
_em_filaments_reconstruction.number_sample_points_layerline
Image Processing
em_singleparticle_selection
em_3d_reconstruction
em_particle_picking
em_particle_picking_list
em_filaments_selection
em_filaments_reconstruction
14
Structure Analysis fitting
EM
em_3d_fitting
_em_3d_fitting.id
_em_3d_fitting.entry_id
_em_3d_fitting.method
_em_3d_fitting.target_criteria
_em_3d_fitting.quality_index
_em_3d_fitting.local_variance
_em_3d_fitting.quality_details
_em_3d_fitting.details
_em_3d_fitting.overall_b_value
_em_3d_fitting.ref_space
_em_3d_fitting.ref_protocol
em_3d_fitting_list
_em_3d_fitting_list.3d_fitting_id
_em_3d_fitting_list.id
_em_3d_fitting_list.pdb_entry_id
_em_3d_fitting_list.pdb_chain_id
_em_3d_fitting_list.model_details
_em_3d_fitting_list.fitted_pdb_entry_id
_em_3d_fitting_list.entry_id
_em_3d_fitting_list.fitted_pdb_chain_id
_em_3d_fitting_list.start_seq
_em_3d_fitting_list.end_seq
_em_3d_fitting_list.start_pdb_symm_as_xyz
_em_3d_fitting_list.transform_matrix11
_em_3d_fitting_list.transform_matrix12
_em_3d_fitting_list.transform_matrix13
_em_3d_fitting_list.transform_matrix14
_em_3d_fitting_list.transform_matrix21
_em_3d_fitting_list.transform_matrix22
_em_3d_fitting_list.transform_matrix23
_em_3d_fitting_list.transform_matrix24
_em_3d_fitting_list.transform_matrix31
_em_3d_fitting_list.transform_matrix32
_em_3d_fitting_list.transform_matrix33
_em_3d_fitting_list.transform_matrix34
_em_3d_fitting_list.transform_matrix41
_em_3d_fitting_list.transform_matrix42
_em_3d_fitting_list.transform_matrix43
_em_3d_fitting_list.transform_matrix44
Structure Analysis
em_3d_fitting
em_3d_fitting_list
em_classes
em_refinement
em_fsc_curve

15
Structure Analysis refinement
EM
em_classes
_em_classes.id
_em_classes.details
_em_classes.entry_id
_em_classes.origin_x
_em_classes.origin_y
_em_classes.euler_1
_em_classes.euler_2
_em_classes.euler_3
_em_classes.num_particles
_em_classes.angular_error_threshold
_em_classes.internal_resolution_flag
_em_classes.average_angular_error
_em_classes.average_translational_pixel_shift_error
_em_classes.fractional_minimum_amplitude
_em_classes.global_correlation_coefficient
_em_classes.global_real-space_correlation_coefficient
_em_classes.clustering_method
_em_classes.alignment_method
em_3d_refinement
_em_3d_refinement.id
_em_3d_refinement.entry_id
_em_3d_refinement.method_details
_em_3d_refinement.num_iterations
_em_3d_refinement.angular_search_step_size
_em_3d_refinement.max_spatial_frequency
_em_3d_refinement.structure_radius
_em_3d_refinement.projection_radius
_em_3d_refinement.alignment_radius
_em_3d_refinement.convergence_criterion
em_fsc_curve
_em_fsc_curve.curve_id
_em_fsc_curve.id
_em_fsc_curve.x
_em_fsc_curve.y

Structure Analysis
em_3d_fitting
em_3d_fitting_list
em_classes
em_refinement
em_fsc_curve

16
Map Description
EM
Map Description
em_map
_em_map.id
_em_map.3d_reconstruction_id
_em_map.imaging_id
_em_map.entry_id
_em_map.map_files_id
_em_map.num_columns
_em_map.num_rows
_em_map.num_sections
_em_map.spacing_x
_em_map.spacing_y
_em_map.spacing_z
_em_map.data_type
_em_map.pixel_x
_em_map.pixel_y
_em_map.pixel_z
_em_map.row_limit
_em_map.col_limit
_em_map.sec_limit
_em_map.plane_group
_em_map.origin_x
_em_map.origin_y
_em_map.origin_z
_em_map.value_density_min
_em_map.value_density_max
_em_map.value_density_mean
_em_map.details
_em_map.value_density_std
_em_map.2d_crystal_grow_id
_em_map.map_symmetry_id
_em_map.map_structure_factors_id
_em_map.cell_length_a
_em_map.cell_length_b
_em_map.cell_length_c
_em_map.cell_length_a_esd
_em_map.cell_length_b_esd
_em_map.cell_length_c_esd
_em_map.cell_angle_alpha
_em_map.cell_angle_beta
_em_map.cell_angle_gamma
_em_map.reflection_wavelength
_em_map.r_value_all_data
_em_map.r_free
_em_map.num_atoms
_em_map.num_observations
_em_map.num_unique_reflns
_em_map.percent_reflns_collected
_em_map.map_eigenvalues_id
_em_map.handedness_method
_em_map.phase_origin_method
_em_map.num_class_averages
_em_map.axisOrderFast
_em_map.axisOrderMedium
_em_map.axisOrderSlow
_em_map.spaceGroupNumber
_em_map.isosurface_countour_level
_em_map.author_threshold
_em_map.contrast_convention
_em_map.enforced_symmetry
_em_map.local_symmetry_details
_em_map.thickness
_em_map.release_date
_em_map_structure_factors.method
_em_map_structure_factors.details
_em_orthogonal_slices.id
_em_orthogonal_slices.map_id
17
Map Description
EM
Map Description
em_map_resolution
_em_map_resolution.entry_id
_em_map_resolution.title
_em_map_resolution.x_axis
_em_map_resolution.y_axis
_em_map_resolution.map_id
_em_map_resolution.curve_id
_em_map_resolution.cutoff_used
_em_map_resolution.sigma_weight
_em_map_resolution.fsc_criteria
_em_map_resolution.3d_reconstruction_resolution_method
_em_map_resolution.resolution_cut_off_criteria
_em_map_resolution.nyquist_frequency
_em_map_resolution.fsc_significance_threshold
_em_map_resolution.fsc_spatial_frequency
_em_map_resolution.spectral_value
_em_map_resolution.dpr_spatial_frequency
_em_map_resolution.dpr_value
_em_map_resolution.dpr_crit
_em_map_resolution.details
em_map_ctf_correction
_em_map_ctf_correction.id
_em_map_ctf_correction.map_id
_em_map_ctf_correction.method
_em_map_ctf_correction.details
em_map_structure_factors
_em_map_structure_factors.id
_em_map_structure_factors.map_id
_em_map_structure_factors.map_files_id
em_map_figure
_em_map_figure.id
_em_map_figure.map_id
_em_map_figure.num_bytes
_em_map_figure.details
_em_map_figure.map_files_id
em_orthoganol_slices
_em_orthogonal_slices.x_slice_id
_em_orthogonal_slices.y_slice_id
_em_orthogonal_slices.z_slice_id
_em_orthogonal_slices.x_slice_number
_em_orthogonal_slices.y_slice_number
_em_orthogonal_slices.z_slice_number





em_map_surface
_em_map_surface_rendering.id
_em_map_surface_rendering.map_id
_em_map_surface_rendering.method
_em_map_surface_rendering.threshold_volume_mol_wt
_em_map_surface_rendering.details
_em_map_surface_rendering.map_files_id
em_map_symmetry
_em_map_symmetry.id
_em_map_symmetry.map_id
_em_map_symmetry.plane_group_name_H-M
_em_map_symmetry.enforced_symmetry
_em_map_symmetry.equiv_pos_as_xyz
18
Map Description
EM
Map Description
em_map_files
_em_map_files.id
_em_map_files.map_id
_em_map_files.orthogonal_slices_x_slice_id
_em_map_files.orthogonal_slices_y_slice_id
_em_map_files.orthogonal_slices_z_slice_id
_em_map_files.details
em_map_eigenvalues
_em_map_eigenvalues.id
_em_map_eigenvalues.map_id
_em_map_eigenvalues.details
_em_map_eigenvalues.spectrum
_em_map_eigenvalues.min_value
_em_map_eigenvalues.max_value
em_tomography
_em_tomography.id
_em_tomography.entry_id
_em_tomography.tilt_angle_incr
_em_tomography.num_sections
_em_tomography.details
_em_tomography.StagePositionX
_em_tomography.StagePositionY
em_tomography_image
_em_tomography_image.id
_em_tomography_image.entry_id
_em_tomography_image.defocus
_em_tomography_image.electron_dose
_em_tomography_image.exposure_time
_em_tomography_image.magnification
_em_tomography_image.pixel_size
_em_tomography_image.shift_x
_em_tomography_image.shift_y
_em_tomography_image.tilt_angle