PRAGMA Grid Testbed

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PRAGMA Grid TestbedRoutine-basis
ExperimentsMay October 2005

• Cindy Zheng
• Pacific Rim Application and Grid Middleware
  Assembly
• San Diego Supercomputer Center
• University of California, San Diego

http//pragma-goc.rocksclusters.org
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PRAGMA Grid Testbed
UZurich, Switzerland
NCSA, USA
KISTI, Korea
CNIC, China
UMC, USA
AIST, Japan
GUCAS, China
SDSC, USA
TITECH, Japan
UoHyd, India
NCHC, Taiwan
CICESE, Mexico
KU, Thailand
ASCC, Taiwan
UNAM, Mexico
USM, Malaysia
BII, Singapore
MU, Australia
UChile, Chile
http//pragma-goc.rocksclusters.org
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PRAGMA Grid resources http//pragma-goc.rocksclus
ters.org/pragma-doc/resources.html
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QMMDhttp//pragma-goc.rocksclusters.org/applicati
ons/qmmd/qmmd_requirement.html

• Quantum mechanics application
• Ninf-G based
• Driver Hiroshi Takemiya (AIST)
• Running on 64 sites for 5 days
• Ready on 12 sites
• AIST Yoshio Tanaka, Yusuke Tanimura
• ASCC Hurng-Chun Lee, Mike Chiang
• CNIC Kai Nan, Kevin Dong
• KISTI Jysoo Lee, Jae-Hyuck Kwak
• KU Somsak Sriprayoonsakul, Sugree Phatanapherom
• NCHC Weicheng Huang, Chien-Lin Huang
• NCSA Radha Nandkumar, Tom Roney
• SDSC Mason Katz, Cindy Zheng
• TITECH Satoshi Matsuoka, Hitoshi Aoki
• UNAM Jose Luis Gordillo Ruiz, Eduardo Murrieta
  Leon
• UoHyd Arun Agarwal, Rajeev Wankar, Neelakanta
  Reddy
• USM(hawk) Habibah Wahab, Suhaini Ahmad

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Savannahhttp//pragma-goc.rocksclusters.org/appli
cations/savannah/default.html

• Wildfire simulation
• Nimrod/G based
• Driver Colin Enticott (MU)
• Ready on 10 sites
• AIST Yoshio Tanaka, Yusuke Tanimura
• ASCC Hurng-Chun, Lee, Mike Chiang
• KISTI Jysoo Lee, Jae-Hyuck Kwak
• KU Sugree Phatanapherom, Somsak Sriprayoonsakul
• MU David Abramson
• NCHC Weicheng Huang, Chien-Lin Huang
• NCSA Radha Nandkumar, Tom Roney
• SDSC Mason Katz, Cindy Zheng
• TITECH Satoshi Matsuoka, Hitoshi Aoki
• UNAM Jose Luis Gordillo Ruiz, Eduardo Murrieta
  Leon
• UoHyd Arun Agarwal, Rajeev Wankar, Neelakanta
  Reddy

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Gfarmhttp//pragma-goc.rocksclusters.org/applicat
ions/gfarm/gfarm.html

• Gfarm grid virtual file system
• Development lead Osamu Tatebe (AIST)
• Ready on 7 sites
• AIST Yusuke Tanimura, Yoshio Tanaka
• ASCC Mike Chiang, Hurng-Chun, Lee
• KISTI Jae-Hyuck Kwak, Jysoo Lee
• NCHC Chien-Lin Huang, Weicheng Huang
• NCSA Tom Roney, Radha Nandkumar
• SDSC Cindy Zheng, Mason Katz
• TITECH Hitoshi Aoki, Satoshi Matsuoka

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Community Scheduling Frameworkhttp//pragma-goc.r
ocksclusters.org/softdepot/zding_csf.ppt

• Interface GT4 and local schedulers
• Implementation and deployment lead XiaoHui Wei
  and ZhaoHui Ding (JLU)
• Supported by
• SDSC Wilfred Li, Cindy Zheng
• AIST Yoshio Tanaka

PBS
PBS
CSF
SGE
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SGE
PBS
2
4
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iGAPhttp//pragma-goc.rocksclusters.org/applicati
ons/igap/igap.html

• Genome annotation pipeline
• Use CSF/Gfarm
• Driver Wilfred Li (SDSC)
• Ready on 7 sites
• AIST Yoshio Tanaka, Yusuke Tanimura
• ASCC Hurng-Chun Lee, Mike Chiang
• KISTI Jysoo Lee, Jae-Hyuck Kwak
• NCHC Weicheng Huang, Chien-Lin Huang
• NCSA Radha Nandkumar, Tom Roney
• SDSC Mason Katz, Cindy Zheng
• TITECH Satoshi Matsuoka, Hitoshi Aoki

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SCMSWebhttp//pragma-goc.rocksclusters.org/scmswe
b/

• Grid monitoring accounting
• Development lead KU Putchong Uthayopas, Somsak
  Sriprayoonsakul, Sugree Phatanapherom
• Collaborations
• Solaris porting at CICESE Raul Hazas, Areli
  Garcia
• IA64 porting at CNIC Kevin Dong
• Deployed on 15 sites
• AIST Yoshio Tanaka, Yusuke Tanimura
• ASCC Hurng-Chun Lee, Mike Chiang
• BII Stephen Wong, Damien Leong Wye Kit
• CICESE Raul Hazas, Salvador Castaneda, Julian
  Delgado
• CNIC Kai Nan, Kevin Dong
• KISTI Jysoo Lee, Jae-Hyuck Kwak
• KU Sugree Phatanapherom, Somsak Sriprayoonsakul
• NCHC Weicheng Huang, Chien-Lin Huang
• NCSA Radha Nandkumar, Tom Roney
• SDSC Mason Katz, Cindy Zheng
• TITECH Satoshi Matsuoka, Hitoshi Aoki
• UChile Alejandro Jofre, Juan Carlos Maureira
• UNAM Jose Luis Gordillo Ruiz, Eduardo Murrieta
  Leon

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MOGAShttp//ntu-cg.ntu.edu.sg/pragma/gridacctinfo

• Grid accounting system
• Development lead NTU Francis Lee, Junwei Lee
• Deployed on 7 sites
• AIST Yoshio Tanaka, Yusuke Tanimura
• KISTI Jysoo Lee, Jae-Hyuck Kwak
• NCSA Radha Nandkumar, Tom Roney
• SDSC Mason Katz, Cindy Zheng
• TITECH Satoshi Matsuoka, Hitoshi Aoki
• UNAM Jose Luis Gordillo Ruiz, Eduardo Murrieta
  Leon
• USM(hawk) Habibah Wahab, Suhaini Ahmad

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Grid-enabling Applications

• Ocean science (CICESE, Mexico)
• IGrid05 demo
• Raul Hazas, Luis Farfán, Salvador Castaneda,
  Julian Delgado
• GAMESS/APBS (UZurich, Switzerland)
• Kim Baldridge, Celine Amoreira
• FLARM, Drug-design (CNIC, China)
• Bin Shen, Kevin Dong
• San Andreas Fault simulation (iGEON)
• Mian Liu (UMC), Huai Zhang (GUCAS)

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Ninf-G/NMI/Rocks Integration

• Ninf-G-2.4/NMI
• Lead integrators
• Yoshio Tanaka (AIST)
• Mats Rynge (NMI)
• Ninf-G 2.4 Rocks Roll
• Lead integrators
• Mason Katz (SDSC)
• Yoshio Tanaka (AIST)

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GAMA/Naregi-CA Integration

• Naregi-CA - certificate authorization system
• Gama - trust management system
• Collaborators
• Naregi, Japan
• Shinichi Mineo
• Takto Okuno
• SDSC, USA
• Sandeep Chandra
• Kurt Mueller
• Mason Katz
• Cindy Zheng

GAMA
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Network Measurementshttp//pragma-goc.rockscluste
rs.org/pragma-grid-status/testbed_amp.htm

• Deployed NLANR AMP to all testbed sites
• AMP data map on pragma-goc
• AMP map software
• PRIME project
• AMP data interface
• Collaborators
• NLANR Tony McGregor, Ronn Ritke, Bud Hale,
  Jeremy Kallstrom
• UCSD Peter Arzberger, Cindy Zheng, John Lee
• CNIC Kai Nan, Kevin Dong
• UChile Alejandro Jofre, Juan Carlos Maureira
• UoHyd Arun Agarwal, Vinod Kumar
• USM(hawk) Suhaini Ahmad, Habibah Wahab, Ruzaimi
  Azizan
• UZurich Kim Baldrige, Wibke Sudholt

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Group paper

• Issues and Methods for Building a
  Multi-Application International Grid Resource
• Cindy Zheng, Mason Katz, Peter Arzberger, Philip
  M. Papadopoulos
• University of California, San Diego, USA
• Yoshio Tanaka, Yusuke Tanimura, Osamu Tatebe
• National Institute of Advanced Industrial Science
  and Technology, Japan
• David Abramson, Colin Enticott, Slavisa Garic,
  Shahaan Ayuub
• Monash University, Australia
• Putchong Uthayopas, Somsak Sriprayoonsakul,
  Sugree Phatanapherom
• Kasetsart University, Thailand
• Jae-Hyuck Kwak
• Korea Institute of Science and Technology
  Information, Korea

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Thank you

• http//pragma-goc.rocksclusters.org