GeneGrid and GridSphere

1
GeneGrid and GridSphere

• Noel Kelly

2
Commercial Partners

• Targets for Protein Antibody discovery
• Cancer and Immunology

• Medical Research Epilepsy
• Potential Products from Molecular Mining

3
GeneGrid Architecture
GDM Service

GeneGrid Environment
GeneGrid Portal
GeneGrid Workflow Manager Service
GeneGrid Application Resource Registry
GDM Service
GAM Service
GAM Service
GDM Service
iGAP
GAM Service
GDM Service
Blast
EMBL DB
TMHMM
mpiBlast
SwissProt DB
EBI
SignalP
BeSC
SDSC
SwissProt Database
EMBL Database
4
Sample Experiment
BlastP
SwissProt Query
Blast Formatter
TMHMM
SignalP
Eliminator
Bl2Seq
Eliminator
5
GridSphere in GeneGrid

• Insulation from the Scary Grid
• Server Side Deployment
• User Familiarity
• Quick to set up!!!

6
GeneGrid Portlet Functionality

• Build new experiments (Wizard Style)
• Save and reuse Experiment Templates
• Common experiment templates
• Track Experiment Progress Status
• View all input and result files

7
Future Portal Plans

• Addition of new tasks
• Edit Delete tasks
• Single Configuration Point
• Incorporate Grid Manager display
• Statistics Monitoring (?)
• Log Viewing (?)

8
GeneGrid Contacts

• Noel Kelly Software Engineer
• n.kelly_at_qub.ac.uk
• Dr. Paul Donachy Project Supervisor
• p.donachy_at_qub.ac.uk
• P.V. Jithesh Bioinformatician
• p.jithesh_at_qub.ac.uk
• GeneGrid web site
• www.qub.ac.uk/escience/projects.php