Gene3D a useful database for protein

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Gene3D -- a useful database for protein

• B92902051 ???
• B92902098 ???

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WebSite

• http//bsmmac1.biochem.ucl.ac.uk8080/Gene3D/

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Intro

• Structural and Functional Annotation of Protein
  Families
• Not simple domain database
• Not simple gene family database

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Intro

• BioMap sequence database
• UniProt(including Integr8)
• Various functional resources(including KEGG and
  GO)
• Using functional data from GO , COGS , KEGG

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Intro

• Scan CATH domain database
• Add Pfam domain family data for UniProt
• Protein-protein interaction data from BIND and
  MINT
• Complete genomes from Integr8 at the EBI

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Intro
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Query

• Start use the database
• Basic query
• Advanced searching

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Basic Query(0/5)

• Single Protein
• Summary Views
• XML Views
• Taxon IDs
• BLASTing a sequence

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Basic Query(1/5)

• Single Protein

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Basic Query(1/5)

• Single Protein

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Basic Query(2/5)

• Summary Views

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Basic Query(3/5)

• XML Views

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Basic Query(4/5)

• Taxon IDs

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Basic Query(5/5)

• BLASTing a sequence

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Advanced Searching(0/5)

• The Pink Search Box(PSB)
• Protein Families
• By domain
• By Functional Terms
• Batch Searches

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Advanced Searching(1/5)

• The Pink Search Box(PSB)

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Advanced Searching(1/5)

• The Pink Search Box(PSB)

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Advanced Searching(2/5)

• Protein Families

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Advanced Searching(2/5)

• Protein Families

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Advanced Searching(2/5)

• Protein Families

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Advanced Searching(3/5)

• By domain

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Advanced Searching(4/5)

• By Functional Terms

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Advanced Searching(5/5)

• Batch Searches

Q9XA16, Q9XA19, VAV_HUMAN
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Reference data

• User tutorial on website
• Other websites
• Hand testing

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Thanks for attention!

• Now youve been an expert of Gene3D .