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BRIDG Basics

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Title: BRIDG Basics


1
BRIDG Basics
2
What is BRIDG?Biomedical Research Integrated
Domain Group
  • A formal model
  • A communication bridge
  • An open community of stakeholders
  • The semantic foundation for application and
    message development

3
How did BRIDG get started?
  • Four important streams of development came
    together
  • CDISC In early 2004, CDISC started constructing
    a Domain Analysis Model to support harmonization
    of their standards for clinical research as well
    as with the Health Level Seven (HL7) healthcare
    standard.
  • NCI In late 2004, NCI's Cancer Biomedical
    Informatics Grid (caBIG) initiative joined the
    CDISC BRIDG efforts to construct a structured
    protocol representation for its Clinical Trials
    Management Systems (CTMS) Workspace, in order to
    further interoperability among clinical trials
    research in cancer.
  • HL7 In 2005, the BRIDG model was adopted by the
    HL7 Regulated Clinical Research Information
    Management (RCRIM) Technical Committee as the
    RCRIM Domain Analysis Model.
  • FDA In 2007, the US Food and Drug Administration
    included BRIDG in their 5 year IT Plan as a
    foundation for several projects.

4
BRIDG Scope
  • BRIDG Scope Protocol-driven research and its
    associated regulatory artifacts,
  • i.e. the data, organization, resources, rules,
    and processes involved in the formal assessment
    of the utility, impact, or other pharmacological,
    physiological, or psychological effects of a
    drug, procedure, process, subject characteristic,
    biologic, cosmetic, food or device on a human,
    animal, or other subject or substance plus all
    associated regulatory artifacts required for or
    derived from this effort, including data
    specifically associated with post-marketing
    adverse event reporting.

5
BRIDG Governance
  • BRIDG Board of Directors
  • BRIDG Semantic Coordination Committee

6
Current Governance of the BRIDG Model BRIDG Board
of Directors
HL7
FDA
Academia
CDISC
NCI
Pharma Industry
BRIDG Board of Directors
  • BRIDG Board of Directors
  • Representation from the current stakeholders
  • Helps to set priorities and identify resources

Source Doug Fridsma
7
BRIDG Board of Directors
7
Chair
8
Current Organization of the BRIDG SCC
caBIG
HL7
CDISC
FDA
BRIDG Semantic Coordination Committee
  • Semantic Coordination Committee (SCC)
  • Responsible for ongoing model maintenance
  • Harmonizes subdomain projects into the main model

Source Doug Fridsma
9
Semantic Coordination Committee (SCC)
9
10
The BRIDG Model
11
Perspectives of BRIDG
12
Perspectives of BRIDG
  • Recognize and support the different types of
    BRIDG users
  • Each perspective is intended for a different
    audience
  • Each perspective is a representation of the same
    semantics

13
BRIDG Canonical Perspective
  • Comprehensive Domain Analysis Model (DAM)
  • Intended for information analysts
  • Single UML model
  • Modeled and managed in Enterprise Architect

14
BRIDG Canonical PerspectiveModel of Subject
15
BRIDG Comprehensive View Canonical Perspective
Common
Protocol Representation
Study Conduct
Adverse Event
Regulatory
16
BRIDG SME Perspective
  • Domain-friendly layer
  • Intended for the subject matter experts (also
    called business users or domain experts)
  • Multiple UML models, one for each sub-domain
  • Modeled and managed in Enterprise Architect
  • Automatically generated from Canonical Perspective

17
BRIDG SME PerspectiveAdverse Event Sub-Domain
Model of Subject
18
BRIDG HL7 Perspective
  • RIM-based model
  • Intended for message developers
  • Modeled in HL7 proprietary modeling methodology
    and developed in Visio
  • Single DMIM-like model
  • Maps to UML-based model
  • Manually generated from Canonical Perspective

19
BRIDG HL7 PerspectiveModel of Subject
20
BRIDG Semantic Perspective
  • Several ontological representations
  • OWL-DL format
  • Intended for semantic validation and inferencing

21
BRIDG Semantic PerspectiveModel of Subject
22
BRIDG as a global, public standard
  • CDISC Review and Comment Process resulted in
    BRIDG as a CDISC standard in January 2010
  • ISO Joint Initiative Council (JIC) Ballot Process
    first round in May 2010 BRIDG passed the
    ballot in both ISO and HL7 next round starts in
    December 2010
  • ISO
  • HL7
  • CDISC

23
BRIDG Content 1 (starting with most recent
release)
24
BRIDG Content - 2
25
A Bit More About the Canonical and SME
Perspectives
26
Unified Modeling Language
  • Used in the BRIDG model via a modeling tool
    called Enterprise Architect
  • The industry-standard language for specifying,
    visualizing, constructing, and documenting the
    requirements of software systems
  • The BRIDG model uses these UML diagrams
  • Class diagrams
  • Instance diagrams
  • State transition diagrams

27
UML Class Diagrams
  • class a concept of primary importance the
    domain-of-interest, depicted as a rectangle
    labeled with the concepts name
  • attribute (including datatype specification) a
    descriptive feature of a class, depicted as being
    contained within the class
  • relationship one of several types of lines
    between classes

28
Class diagram example
29
BRIDG Class StudyProtocolVersion
30
BRIDG Class Definition StudyProtocolVersion
31
Definition of designConfigurationCode attribute
32
Instance Diagrams
  • Instances of class diagrams use sample data
    values to illustrate specific representational
    constructs

33
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34
Part of an Instance Diagram
35
State Transition Diagrams
  • A State Transition Diagram illustrates how an
    element (often a Class) can move between states,
    classifying its behavior according to transition
    triggers and constraining guards.
  • Also called State Machine Diagrams or State
    Charts

36
State Transition Diagram Study Subject
37
Important Components of a Release
  • The Model
  • UML Based Model in Enterprise Architect Model
  • Sub-Domains and Comprehensive View
  • RIM Based Model
  • Users Guide and Release Notes
  • Change Lists
  • Mapping Spreadsheet

38
Users Guide
39
Users Guide
  • Section 1 Guide to the Reader
  • Section 2 Executive Summary
  • Section 3 The BRIDG Project and BRIDG Model
  • Section 4 The BRIDG Model General
    Considerations and Representational Conventions
  • Section 5 Model Content
  • Section 6 Glossary
  • Section 7 Appendix

40
Release Notes
  • Table of Contents
  • 1 Executive Summary
  • 1.1 BRIDG ISO Joint Initiative Council (JIC)
    Ballot
  • 1.2 BRIDG Definition
  • 1.3 BRIDG Project Stakeholders
  • 1.4 BRIDG Project Goals
  • 1.5 Definition of BRIDG Model Domain of Interest
  • 2 Whats New in Release 3.0.1
  • 2.1 General changes in Release 3.0.1
  • 2.2 Detailed Change Lists for Release 3.0.1
  • 3 Files in R3.0.1 Package
  • 3.1 UML-Based Models
  • 3.2 RIM-based Models
  • 3.3 Report of Comprehensive UML-Based Model
  • 3.4 XMI of Comprehensive UML-Based Model
  • 3.5 Release Notes (this file)
  • 3.6 Users Guide
  • 3.7 BRIDG Domain Analysis Static Model Style
    Guide
  • 3.8 BRIDG CDISC Comment Resolution Spreadsheet

41
UML-based Model Mappings to Source Projects
Enterprise Architect
42
UML-Based ModelMappings to Source Projects RTF
Report
43
Foundation of rigorously defined data types
  • Simple vs Abstract
  • Simple Character, String, Text, Numeric
  • BRIDG uses ISO 21090 data type specification

44
Datatypes Complex
ISO 21090 Healthcare Data Types
ST String CD Concept Descriptor (Coded
Concept) DSET unordered collection, unique
values ED Encapsulated data URG Uncertain
Range RTO Ratio II Instance Identifier
  • Some CD properties
  • displayName
  • originalText
  • code
  • codeSystemName
  • codeSystemVersion
  • valueSet
  • And more

45
Interfacing with Controlled Vocabularies
  • Plans to move BRIDG semantics into a controlled
    environment such as NCIs EVS / caDSR
  • BRIDG controlled vocabulary should integrate with
    existing stakeholder vocabulary

46
Whats the Process?
Project Team develops Domain Analysis Model,
mapping spreadsheet, valid value lists Project
Team involves BRIDG SCC early
Reps from project team meet with SCC to harmonize
the project model into the BRIDG
Updated BRIDG Domain Analysis Model is created
The project to BRIDG mapping spreadsheet needs to
be maintained
47
A Look at the Model in Enterprise Architect
  • How to get to the version for review
  • http//www.cdisc.org/contentmgr/showdetails.php/id
    /1938
  • How to get to the model on the internet
  • www.bridgmodel.org
  • The gForge site
  • Release Files
  • News
  • Bug and enhancement trackers
  • Work in progress in Subversion

48
www.bridgmodel.org
49
A Look at the Model in Enterprise Architect
  • How to open the model and look at basic
    components
  • Project Browser
  • Views
  • Class diagrams
  • State Transition Diagrams
  • Instance diagrams

50
Enterprise Architect Project Browser
Project Browser
51
Project Browser - Views
52
Protocol Representation View
53
Comprehensive View
54
Project Browser State Transition Diagrams
55
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56
Project Browser Instance Diagrams
57
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