Future Uses of Genome Databases

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Future Uses of Genome Databases

• Sue Brown, KSU

2

• Doina Caragea, Assitant Professor, CIS
• Sanjay Chillepilla, KSU Bioinformatics Center,
  computer specialist
• Hee Shin Kim, KSUBioinfromatics Center, computer
  specialist

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DNA , ESTs, expression profiles, phenotypes,
ecotypes, literature
Data types
Sequence Gene predictions Homology search Est
pipelines, Mapping RepeatScout TEPipe Repeat
Masker Blast to GO
Expression SAGE Microarrays -Expression -Tiling
in situs
Phenotypes Ecotypes RFLP AFLP SNP
Annotation pipelines
Visualization Tools at all levels
Literature Text mining
Comparative augmented annotation
Community level genome databases
Long-lived digital data collections
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Insects as models for developing
cyberinfrastructure

• Established genome databases
• Specialized tools
• Reproducibility?
• Unlimitedresources

GMOD
Next generation (1000) genomes
Automated Database