Reference Genome graphs

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Reference Genome graphs

• Recap of old stuff
• Some new stuff
• Ecoli annotation data
• Comparison matrix
• With/From column data
• PPOD graphs

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http//www.geneontology.org/images/RefGenomeGraphs
/

• Column entries in the table indicate that the
  organism has an ortholog in the set
• Asterisks indicate that the ortholog has GO
  annotation

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SVG functionality pan, zoom, search for terms
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• Compare annotation for orthology set
• Entry indicates that ortholog exists for this
  organism
• Colored entries indicate annotation
• Parentheses indicate ISS annotation only
• No ortholog X

Top level terms of GO does organism have direct
or inferred annotation to that branch?
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Preliminary annotation data for Ecoli
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With/From column data
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PPOD graphs http//proto.informatics.jax.org/proto
types/GOgraphEX/PPOD_Graphs/
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To compare PPOD with MOD calls
MOD orthology calls gene
PPOD orthology calls clusters
many-to-many
MOD object id associated with gene
MOD object id associated with cluster
http//proto.informatics.jax.org/prototypes/GOgrap
hEX/PPOD_Graphs/
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POLA
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MOD
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MOD
PPOD
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MOD
PPOD
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MOD
PPOD
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MOD calls picking up actin stuff