The multilaboratory project management

1

• The multi-laboratory project management
• The Global Project Tracking System
• Lukasz Szajkowski 1, 3, Anuradha Padki 2, 3,
  Paola Pace 2, 3, Kristen M Taylor 1, 3, Leila A
  Hornick 2, 3, Greg M Werner 1, 3, Darren M Platt
  1, 3
• 1. Lawrence Livermore National Laboratory
• 2. Lawrence Berkeley National Laboratory
• 3. DOE Joint Genome Institute (JGI)

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Agenda

• Sequencing process at the JGI
• Global Project Tracking System
• GPTS technology
• GPTS Data and interface
• System Architecture
• Data exchange

3
JGI Joint Genome Institute
25
12
6
2
2
1
1997
2007
2005
2004
2003
2002
2001
2006
4
Sequencing process
Users
CSP
Stanford
DNA/Library
LANL
Sequencing
ORNL
Assembly
JGI
LLNL
Annotation
Users
Distribution
5
Sequencing process
Users
CSP
Stanford
DNA/Library
LANL
Sequencing
ORNL
Assembly
JGI
LLNL
Annotation
?
Users
Distribution
6
Sequencing process black hole
Users
CSP
Stanford
DNA/Library
LANL
Sequencing
ORNL
Assembly
JGI
LLNL
Anntotation
?
Users
Distribution
7
Global Project Tracking System
CSP
Stanford
DNA/Library
GPTS
LANL
Sequencing
ORNL
Assembly
JGI
LLNL
Annotation
Users
Distribution
8
GPTS technology

• Three tier application
• Java Swing client Java Web Start
• JavaServer Faces client
• SOAP SSL between client and server
• Hibernate - Relational Persistence

9
GPTS Data and interface
10
System Architecture
System
System
Component
GPTS Database
GPTS Kiwi
Global Project Tracking System
Component
Interface
GPTS Server
SOAP
Hibernate
SOAP
SOAP Attributes
SOAP Projects
SOAP ProjectData
Component
SOAP
GPTS Web
System
Grum - Authorization
11
System Architecture
System
System
GPTS Database
Global Project Tracking System
Component
GPTS Server
Hibernate
SOAP Attributes
SOAP Projects
SOAP ProjectData
SOAP
System
Grum - Authorization
12
System Architecture
System
System
GPTS Database
Global Project Tracking System
Component
GPTS Server
Hibernate
SOAP Attributes
SOAP Projects
SOAP ProjectData
SOAP
System
Grum - Authorization
13
System Architecture
14
System Architecture
System
System
GPTS Database
Global Project Tracking System
Component
GPTS Server
Hibernate
SOAP Attributes
Java Web Start
SOAP Projects
SOAP ProjectData
SOAP
System
Grum - Authorization
15
GPTS UI
16
Data exchange
JGI
System
System
Venonat
GPTS Database
Global Project Tracking System
ORNL
Create library
pipeline
Component
GPTS Server
Stanford
SOAP
Hibernate
pipeline
SOAP Attributes
SOAP
SOAP Projects
SOAP ProjectData
SOAP
System
LANL
Grum - Authorization
LLNL
17
Future releases

• Filter sharing
• Email notification
• Data history
• Web reports
• Project status page
• Flexible API calls

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Acknowledgement

• Very active users
• Lynne Goodwin
• David Bruce
• Harris Shapiro
• Fang Cheng
• Kerrie Barry
• Erika Lindquist

• GPTS Team
• Anu Padki
• Paola Pace
• Kristen Taylor
• Amber Shao
• Greg Werner
• Darren Platt
• Contact Lukasz Szajkowski szajkowski2_at_llnl.gov