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Fig. S1. Gene maps of ietAS and their homologues. Black arrows represent ORFs of ietAS and their homologues. Gray arrows and thick gray lines indicate another ORFs in neighboring region. - Rhodococcus jostii RHA1 ...

Rhodococcus jostii RHA1 ...

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Orf1 Eco - 0.1. 0.1. Orf1 Eco. Orf2 Eco. Orf Vch. ExeC Ahy. ExeC Asa. EtpC Eco ... Orf Pal. Orf Ccr. GspC Bce. GspC Bps. Orf Aae. MucD Pae. HtrA Cpn. HtrA Cmu. Orf Ctr ...

0.1. 0.1. Orf1 Eco. Orf2 Eco. Orf Vch. ExeC Ahy. ExeC Asa. EtpC Eco ... Orf Pal. Orf Ccr. GspC Bce. GspC Bps. Orf Aae. MucD Pae. HtrA Cpn. HtrA Cmu. Orf Ctr ...

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Analyses of ORFans in microbial and viral genomes PowerPoint PPT Presentation

Analyses of ORFans in microbial and viral genomes - PowerPoint Presentation Last ... 4 5 Genome-wide quantitative study Classification of ORFans The U-value for all ORFs in prokaryote genomes ...

PowerPoint Presentation Last ... 4 5 Genome-wide quantitative study Classification of ORFans The U-value for all ORFs in prokaryote genomes ...

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Identifying ORFs depends on searching for start and stop codons' - Identifying ORFs depends on searching for start and stop codons'

Identifying ORFs depends on searching for start and stop codons'

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Supplemental Figure S1. Random distribution of IS elements in a section of the DPC 4571 genome. IS elements in a 500 kb section of the genome are indicated by colored arrows (see legend), all other ORFs are represented by open arrows. A locus encoding a - IS elements in a 500 kb section of the genome are indicated by colored arrows ... A locus encoding a ISLhe4 element within the boundaries of an ISLhe2 element is ...

IS elements in a 500 kb section of the genome are indicated by colored arrows ... A locus encoding a ISLhe4 element within the boundaries of an ISLhe2 element is ...

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ORF 510: Directed Research II PowerPoint PPT Presentation

ORF 510: Directed Research II - orfe.princeton.edu

orfe.princeton.edu

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Presentazione di PowerPoint PowerPoint PPT Presentation

Presentazione di PowerPoint - ... 12344-9 2004-01-30 69.3 4829 Kb 4415 orfs Mycobacterium avium paratuberculosis K-10 PNAS 100, 7877-7882 2003-06-24 65.6 4345 Kb 4012 orfs Mycobacterium bovis ...

... 12344-9 2004-01-30 69.3 4829 Kb 4415 orfs Mycobacterium avium paratuberculosis K-10 PNAS 100, 7877-7882 2003-06-24 65.6 4345 Kb 4012 orfs Mycobacterium bovis ...

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Outline - Gateway cloning and using Expression vectors. ... Although expression studies using gateway vectors have been successful using human ORFs. ...

Gateway cloning and using Expression vectors. ... Although expression studies using gateway vectors have been successful using human ORFs. ...

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Presentation by: PowerPoint PPT Presentation

Presentation by: - ... Y2H Method ORFs selected from published sequences Amplified by nested PCR Made primer sets of ends of ORFs Y2H bait and prey vectors Vectors transformed ...

... Y2H Method ORFs selected from published sequences Amplified by nested PCR Made primer sets of ends of ORFs Y2H bait and prey vectors Vectors transformed ...

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BCB 444/544 - ORFs, codon usage. What other types of information can be used? ... Use codon frequencies to compute probability of coding versus non-coding ...

ORFs, codon usage. What other types of information can be used? ... Use codon frequencies to compute probability of coding versus non-coding ...

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Proteomics and Protein Bioinformatics: Functional Analysis of Protein Sequences PowerPoint PPT Presentation

Proteomics and Protein Bioinformatics: Functional Analysis of Protein Sequences - Sequence analysis Genome projects - Gene prediction ... Dealing with hypothetical proteins Computational analysis Sequence analysis of the new ORFs ...

Sequence analysis Genome projects - Gene prediction ... Dealing with hypothetical proteins Computational analysis Sequence analysis of the new ORFs ...

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Genome Sequence Acquisition and Analysis PowerPoint PPT Presentation

Genome Sequence Acquisition and Analysis - ... from the Human Genome Draft Sequences? Goals ... Human Genome Project (HGP) ... GeneCard: Database of annotated genes in human genome. ORFs and Translation ...

... from the Human Genome Draft Sequences? Goals ... Human Genome Project (HGP) ... GeneCard: Database of annotated genes in human genome. ORFs and Translation ...

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PEG precipitation of the PCR product PowerPoint PPT Presentation

PEG precipitation of the PCR product - It is critical to precipitate the DNA to the bottom of the tube. For difficult ORFs use double precipitation to decrease background. ...

It is critical to precipitate the DNA to the bottom of the tube. For difficult ORFs use double precipitation to decrease background. ...

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Department of Biotechnology, University of the Western Cape BTY227 PowerPoint PPT Presentation

Department of Biotechnology, University of the Western Cape BTY227 - flanked by translation start and stop codons) which. encode ... Operons One or more ORFs flanked by regulatory. sequences (promoter, operator, regulator) ...

flanked by translation start and stop codons) which. encode ... Operons One or more ORFs flanked by regulatory. sequences (promoter, operator, regulator) ...

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Computational methods in phylogenetic analysis PowerPoint PPT Presentation

Computational methods in phylogenetic analysis - Better approximations/lower bounds Relationship between quality of ... Ochman estimated that 755 of 4,288 ORF's in E.coli were from at least 234 LGT events ...

Better approximations/lower bounds Relationship between quality of ... Ochman estimated that 755 of 4,288 ORF's in E.coli were from at least 234 LGT events ...

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Cluster Analysis of Microarray Gene Expression PowerPoint PPT Presentation

Cluster Analysis of Microarray Gene Expression - Department of Computer Science and Engineering. University of Minnesota. kuang@cs.umn.edu ... Measurements of 6,220 ORFs at 15 time points ...

Department of Computer Science and Engineering. University of Minnesota. kuang@cs.umn.edu ... Measurements of 6,220 ORFs at 15 time points ...

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Selfish DNA - Genes are viewed as 'ORFS' Open Reading Frames These are ... of extant humans and are therefore observed in all individuals in the human population. ...

Genes are viewed as 'ORFS' Open Reading Frames These are ... of extant humans and are therefore observed in all individuals in the human population. ...

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Genes, Genomes, and Genomics PowerPoint PPT Presentation

Genes, Genomes, and Genomics - Complete DNA segments responsible to make functional products. Products. Proteins ... One ORF per gene. ORFs begin with start, end with stop codon (def. ...

Complete DNA segments responsible to make functional products. Products. Proteins ... One ORF per gene. ORFs begin with start, end with stop codon (def. ...

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A1260079234dQjeq PowerPoint PPT Presentation

A1260079234dQjeq - PilQ Mxa. Orf Pf3. Orf1 Vch. Orf2 Xfa. ComQ Asp. PilQ Pae. Orf1 ... Orf If1. Orf fd. Orf M13. Orf 12-2. Orf Ike. Orf Ahy. Orf1 Pae. GspD Mlo. XpsD Xca. Orf1 Xfa ...

PilQ Mxa. Orf Pf3. Orf1 Vch. Orf2 Xfa. ComQ Asp. PilQ Pae. Orf1 ... Orf If1. Orf fd. Orf M13. Orf 12-2. Orf Ike. Orf Ahy. Orf1 Pae. GspD Mlo. XpsD Xca. Orf1 Xfa ...

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Hace su primera aparici PowerPoint PPT Presentation

Hace su primera aparici - Hace su primera aparici n como Orfe n FaCES en la Casa R mulo Gallegos el 15 de Noviembre del 2000 durante la celebraci n aniversaria de la facultad , bajo la ...

Hace su primera aparici n como Orfe n FaCES en la Casa R mulo Gallegos el 15 de Noviembre del 2000 durante la celebraci n aniversaria de la facultad , bajo la ...

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IGA 8e - Genoma de 3,000'000,000. Necesitamos 50 millones de lecturas independientes para obtener una ... Buscar ORFs computacionalmente encontrando start y stop codons ...

Genoma de 3,000'000,000. Necesitamos 50 millones de lecturas independientes para obtener una ... Buscar ORFs computacionalmente encontrando start y stop codons ...

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Transgenic plants PowerPoint PPT Presentation

Transgenic plants - virD2 & virE2 also help T-DNA get to nucleus in plant cell, they have NLSs. virB - 11 ORFs, helps DNA-protein complex get through cell membranes. From Covey & Grierson ...

virD2 & virE2 also help T-DNA get to nucleus in plant cell, they have NLSs. virB - 11 ORFs, helps DNA-protein complex get through cell membranes. From Covey & Grierson ...

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Introduction to Plant Genomics and Microarrays PowerPoint PPT Presentation

Introduction to Plant Genomics and Microarrays - ORFs are defined by an ATG start codon followed by enough. bases before a stop codon to indicate that there is a potential. gene (called 'putative gene' ...

ORFs are defined by an ATG start codon followed by enough. bases before a stop codon to indicate that there is a potential. gene (called 'putative gene' ...

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SYNERGY Framework and Architecture OVERVIEW PowerPoint PPT Presentation

SYNERGY Framework and Architecture OVERVIEW - Get GenBank entry by accession number. Your relational, object or ... BLAST-ORF. Service. Using CORBA to Find ORFs. and Perform BLAST. Developing a Framework ...

Get GenBank entry by accession number. Your relational, object or ... BLAST-ORF. Service. Using CORBA to Find ORFs. and Perform BLAST. Developing a Framework ...

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Gene Structure and Identification PowerPoint PPT Presentation

Gene Structure and Identification - Ave. distance between genes: 118bp. 318 aa, average protein length ... ORF Finder (NCBI) BCM Search Launcher... ORFs in E. coli. 1. 2. 3 -1 -2 -3. Frame. Codon Bias ...

Ave. distance between genes: 118bp. 318 aa, average protein length ... ORF Finder (NCBI) BCM Search Launcher... ORFs in E. coli. 1. 2. 3 -1 -2 -3. Frame. Codon Bias ...

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Gene prediction PowerPoint PPT Presentation

Gene prediction - Up to 99% DNA is non-coding- long ORFs can exist by chance. ... Located regions are small compared to entire matrix, so the algorithm is speeded up a lot. ...

Up to 99% DNA is non-coding- long ORFs can exist by chance. ... Located regions are small compared to entire matrix, so the algorithm is speeded up a lot. ...

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Genomics - Title: Functional Genomics Global analysis of gene expression Author: Nissim Benvenisty Last modified by: Michael Brandeis Created Date: 6/27/2002 12:51:32 PM

Title: Functional Genomics Global analysis of gene expression Author: Nissim Benvenisty Last modified by: Michael Brandeis Created Date: 6/27/2002 12:51:32 PM

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Genome Analysis of Burkholderia pseudomallei PowerPoint PPT Presentation

Genome Analysis of Burkholderia pseudomallei - Comparison of the two chromosomes ... Chromosome generally housekeeping genes ... 'Chromosome' 2 is a highly probable megaplasmid ...

Comparison of the two chromosomes ... Chromosome generally housekeeping genes ... 'Chromosome' 2 is a highly probable megaplasmid ...

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Praveen%20Muley%20(Alcatel),%20Susan%20Hares%20(NextHop)%20,%20Keyur%20Patel%20(Cisco),%20%20Luyuan%20Fang%20(AT - Policies are being written with multiple ORF types that you want to group, but ... This draft adds missing functionality of relation between the ORF entries ...

Policies are being written with multiple ORF types that you want to group, but ... This draft adds missing functionality of relation between the ORF entries ...

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Comparative mitochondrial zygomycetes: bacterial-like Rnase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperm - Comparative mitochondrial zygomycetes: bacterial-like Rnase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperm

Comparative mitochondrial zygomycetes: bacterial-like Rnase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperm

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Assigning Function to Yeast Proteins PowerPoint PPT Presentation

Assigning Function to Yeast Proteins - YKR079c: DNA/RNA catabolism. YKR079c purifies with YMR099c and Nuc1 ... Nuc1 plays a role in DNA/RNA catabolism and exhibits both ...

YKR079c: DNA/RNA catabolism. YKR079c purifies with YMR099c and Nuc1 ... Nuc1 plays a role in DNA/RNA catabolism and exhibits both ...

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Systematic RNAimediated mRNA knockdown of a large PowerPoint PPT Presentation

Systematic RNAimediated mRNA knockdown of a large - Similar approach taken in yeast, nematode, insect and human. Challenge: Annotation of Genome Sequencing Data ... 76% of T. brucei genes are shared between. all ...

Similar approach taken in yeast, nematode, insect and human. Challenge: Annotation of Genome Sequencing Data ... 76% of T. brucei genes are shared between. all ...

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The Toy Exon Finder PowerPoint PPT Presentation

The Toy Exon Finder - ... genes, typically no more than 20 bp between successive genes on a chromosome ... The exons incorporate fairly strong codon biases and a significant GC bias ...

... genes, typically no more than 20 bp between successive genes on a chromosome ... The exons incorporate fairly strong codon biases and a significant GC bias ...

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