74 Mrbayes PPTs View free & download

Running MrBayes PowerPoint PPT Presentation

Running MrBayes - Running MrBayes. Use execute to bring data in a Nexus file into MrBayes ... Note that MrBayes runs two independent Metropolis-coupled analyses by default ...

Running MrBayes. Use execute to bring data in a Nexus file into MrBayes ... Note that MrBayes runs two independent Metropolis-coupled analyses by default ...

| PowerPoint PPT presentation | free to view

Running MrBayes - none

none

| PowerPoint PPT presentation | free to view

Phylogeny - In molecular evolution, the studied data are homologous DNA/AA sequences ... Monte Carlo Markov Chains (MCMC) (e.g., using MrBayes) Most accurate. Very slow ...

In molecular evolution, the studied data are homologous DNA/AA sequences ... Monte Carlo Markov Chains (MCMC) (e.g., using MrBayes) Most accurate. Very slow ...

| PowerPoint PPT presentation | free to view

The Tree of Life: Algorithmic and Software Challenges PowerPoint PPT Presentation

The Tree of Life: Algorithmic and Software Challenges - The University of Texas at Austin. How did life evolve on earth? ... and extensions to existing software (MrBayes and Phycas, Mesquite, POY) ...

The University of Texas at Austin. How did life evolve on earth? ... and extensions to existing software (MrBayes and Phycas, Mesquite, POY) ...

| PowerPoint PPT presentation | free to download

Models of Protein Evolution PowerPoint PPT Presentation

Models of Protein Evolution - DNA (4 x 4 rate matrix) vs amino acid (20 x 20) resulting in many more ... in MrBayes), but all codon positions the same base freq and substitution matrix ...

DNA (4 x 4 rate matrix) vs amino acid (20 x 20) resulting in many more ... in MrBayes), but all codon positions the same base freq and substitution matrix ...

| PowerPoint PPT presentation | free to view

Phylogenetic Analysis PowerPoint PPT Presentation

Phylogenetic Analysis - Phylogenetics Get related sequences of interest Perform multiple sequence alignments Edit alignment Estimate phylogenetic relationships Interpret results correctly ...

Phylogenetics Get related sequences of interest Perform multiple sequence alignments Edit alignment Estimate phylogenetic relationships Interpret results correctly ...

| PowerPoint PPT presentation | free to download

Genes to Trees Daniel Ayres and Adam Bazinet PowerPoint PPT Presentation

Genes to Trees Daniel Ayres and Adam Bazinet - Genes to Trees Daniel Ayres and ... Scripting will be done with Perl Extensive use of BioPerl libraries Collection of modules for bioinformatics programming ...

Genes to Trees Daniel Ayres and ... Scripting will be done with Perl Extensive use of BioPerl libraries Collection of modules for bioinformatics programming ...

| PowerPoint PPT presentation | free to download

Rekonstruktion phylogenetischer B PowerPoint PPT Presentation

Rekonstruktion phylogenetischer B - Title: Exon prediction by Genomic Sequence alignment Burkhard Morgenstern and Oliver Rinner Author: public Last modified by: Burkhard Created Date

Title: Exon prediction by Genomic Sequence alignment Burkhard Morgenstern and Oliver Rinner Author: public Last modified by: Burkhard Created Date

| PowerPoint PPT presentation | free to download

Discovering critical residues in glutathione reductase http://dev.gentoo.org/~spyderous/ bioinformatics_GR_presentation.ppt PowerPoint PPT Presentation

Discovering critical residues in glutathione reductase http://dev.gentoo.org/~spyderous/ bioinformatics_GR_presentation.ppt - Verify whether residues already thought critical are actually conserved. Check for potential differences in function and specificity among subfamilies (Podar et al. ...

Verify whether residues already thought critical are actually conserved. Check for potential differences in function and specificity among subfamilies (Podar et al. ...

| PowerPoint PPT presentation | free to view

FROM PROTEIN SEQUENCES TO PHYLOGENETIC TREES PowerPoint PPT Presentation

FROM PROTEIN SEQUENCES TO PHYLOGENETIC TREES - the more you know about the compared proteins and the method used, ... Methods in Enzymology 224, 456-487. 1. 2. 3. 4. 5. Align Sequences. Phylogenetic signal? ...

the more you know about the compared proteins and the method used, ... Methods in Enzymology 224, 456-487. 1. 2. 3. 4. 5. Align Sequences. Phylogenetic signal? ...

| PowerPoint PPT presentation | free to download

Parallel - Parallel & Distributed Systems and Algorithms for Inference of Large ... Guidon et al (May 2003) PHYML very fast & accurate ML program for real ...

Parallel & Distributed Systems and Algorithms for Inference of Large ... Guidon et al (May 2003) PHYML very fast & accurate ML program for real ...

| PowerPoint PPT presentation | free to view

Sequence analysis course PowerPoint PPT Presentation

Sequence analysis course - PAUP Phylip by Joe ... Sequence analysis course Author: pirovano Last modified by: heringa Created Date: 11/2/2005 9:49:40 AM Document presentation format: On ...

PAUP Phylip by Joe ... Sequence analysis course Author: pirovano Last modified by: heringa Created Date: 11/2/2005 9:49:40 AM Document presentation format: On ...

| PowerPoint PPT presentation | free to download

Grid Portals in Australia PowerPoint PPT Presentation

Grid Portals in Australia - Engineering. Abacus Portal. NeuroScience ... Nuclear Science (ANSTO, Sydney) Atmospheric Science (UNSW, Sydney) Generic Portlets -QUT ...

Engineering. Abacus Portal. NeuroScience ... Nuclear Science (ANSTO, Sydney) Atmospheric Science (UNSW, Sydney) Generic Portlets -QUT ...

| PowerPoint PPT presentation | free to view

A Steering Portal for Condor/DAGMAN PowerPoint PPT Presentation

A Steering Portal for Condor/DAGMAN - Use DAGMan Retry function to resume workflow execution ... Apply to sample applications (simple pi calculation and more complex phylogenetic tree example) ...

Use DAGMan Retry function to resume workflow execution ... Apply to sample applications (simple pi calculation and more complex phylogenetic tree example) ...

| PowerPoint PPT presentation | free to download

Phylogenetic Trees PowerPoint PPT Presentation

Phylogenetic Trees - Orthology : two genes are orthologous iff. they diverged following a speciation event. ... Orthology functional equivalence. Primates. Rodents. Human. ancestral ...

Orthology : two genes are orthologous iff. they diverged following a speciation event. ... Orthology functional equivalence. Primates. Rodents. Human. ancestral ...

| PowerPoint PPT presentation | free to download

Bayesian Phylogeny PowerPoint PPT Presentation

Bayesian Phylogeny - Prior probability: the probability of the event before considering some additional data ... 3. Integrates over parameters instead of optimising over parameters. MCMC ...

Prior probability: the probability of the event before considering some additional data ... 3. Integrates over parameters instead of optimising over parameters. MCMC ...

| PowerPoint PPT presentation | free to view

Sequence analysis course - No need to memorise PAUP Phylip ... Sequence analysis course Author: pirovano Last modified by: heringa Created Date: 11/2/2005 9:49:40 AM Document presentation format:

No need to memorise PAUP Phylip ... Sequence analysis course Author: pirovano Last modified by: heringa Created Date: 11/2/2005 9:49:40 AM Document presentation format:

| PowerPoint PPT presentation | free to download

Bayesian inference of phylogeny and evolution PowerPoint PPT Presentation

Bayesian inference of phylogeny and evolution - ... the probability of the data (X) given the hypothesis, ... Model space for a data set with 100 taxa and 1000 sites. Strict clock. models. Standard non-clock ...

... the probability of the data (X) given the hypothesis, ... Model space for a data set with 100 taxa and 1000 sites. Strict clock. models. Standard non-clock ...

| PowerPoint PPT presentation | free to view

Phylogenetic analysis combining information from different data partitions - Phylogenetic analysis combining information from different data partitions

Phylogenetic analysis combining information from different data partitions

| PowerPoint PPT presentation | free to view

Phylogenetic Tree Construction Methods and Programs - Phylogenetic Tree Construction Methods and Programs

Phylogenetic Tree Construction Methods and Programs

| PowerPoint PPT presentation | free to view

PAML: Phylogenetic Analysis by Maximum Likelihood PowerPoint PPT Presentation

PAML: Phylogenetic Analysis by Maximum Likelihood - ML for amino acids & codons. The world's best named simulation program ... Uses of PAML (iv): Codon substitution models & detection of selection in protein ...

ML for amino acids & codons. The world's best named simulation program ... Uses of PAML (iv): Codon substitution models & detection of selection in protein ...

| PowerPoint PPT presentation | free to view

Comparative Genomics PowerPoint PPT Presentation

Comparative Genomics - Rate variation across sites in a protein-coding gene (first positions in ... Clock trees allow dating; non-clock trees do not. But clock trees poor fit to most data ...

Rate variation across sites in a protein-coding gene (first positions in ... Clock trees allow dating; non-clock trees do not. But clock trees poor fit to most data ...

| PowerPoint PPT presentation | free to view

Biodiversity conservation using Phylogenetics on a global scale Klaas Hartmann TAFI, University of Tasmania PowerPoint PPT Presentation

Biodiversity conservation using Phylogenetics on a global scale Klaas Hartmann TAFI, University of Tasmania - Maximimizing phylogenetic diversity in biodiversity conservation: greedy ... Stochastic properties of generalised Yule models, with biodiversity applications. ...

Maximimizing phylogenetic diversity in biodiversity conservation: greedy ... Stochastic properties of generalised Yule models, with biodiversity applications. ...

| PowerPoint PPT presentation | free to download

The Barcode Gap PowerPoint PPT Presentation

The Barcode Gap - BANBURY 3 The Barcode Gap Speciation or Phylogeography?? Graham Stone, Richard Challis, James Nicholls, Jenna Mann, Sonja Preuss Mark Blaxter Institute of ...

BANBURY 3 The Barcode Gap Speciation or Phylogeography?? Graham Stone, Richard Challis, James Nicholls, Jenna Mann, Sonja Preuss Mark Blaxter Institute of ...

| PowerPoint PPT presentation | free to view

Scientific Workflow Support for AToL Data Analysis PowerPoint PPT Presentation

Scientific Workflow Support for AToL Data Analysis - NSF/CISE funded 3-year collaboration between U Penn, Univ. of Florida, UC ... For example, subworkflows create and parse data structures and files specific to ...

NSF/CISE funded 3-year collaboration between U Penn, Univ. of Florida, UC ... For example, subworkflows create and parse data structures and files specific to ...

| PowerPoint PPT presentation | free to view

Advances in the biomedical applications of the EELA Project PowerPoint PPT Presentation

Advances in the biomedical applications of the EELA Project - It is Focused Towards Thyroid Cancer and Treatment of Metastasis with P32. ... Treatment of metastasis with P32. 9 centers in Cuba are interested ...

It is Focused Towards Thyroid Cancer and Treatment of Metastasis with P32. ... Treatment of metastasis with P32. 9 centers in Cuba are interested ...

| PowerPoint PPT presentation | free to view

BiodiversityWorld GRID Workshop PowerPoint PPT Presentation

BiodiversityWorld GRID Workshop - Simple workflow to fetch all GBIF localities for a list of names ... Plants, fungi, animals & insects * Source: http://www.sp2000.org June 2005 ...

Simple workflow to fetch all GBIF localities for a list of names ... Plants, fungi, animals & insects * Source: http://www.sp2000.org June 2005 ...

| PowerPoint PPT presentation | free to view

Statistical Phylogenetics PowerPoint PPT Presentation

Statistical Phylogenetics - ( Courtesy of NCBI Gen Bank) ... USA 103, 2845-2850. Fig. 1. Map of eastern Asia showing Fujian, Guangdong, Guangxi, Guizhou, Hong ...

( Courtesy of NCBI Gen Bank) ... USA 103, 2845-2850. Fig. 1. Map of eastern Asia showing Fujian, Guangdong, Guangxi, Guizhou, Hong ...

| PowerPoint PPT presentation | free to view

Sequence analysis course - Charlie Chaplin problem. T-coffee global, local or both. Comparing T-coffee with other methods ... However, there is the Charlie Chaplin problem ...

Charlie Chaplin problem. T-coffee global, local or both. Comparing T-coffee with other methods ... However, there is the Charlie Chaplin problem ...

| PowerPoint PPT presentation | free to view

Intel multicore processors as platform for research PowerPoint PPT Presentation

Intel multicore processors as platform for research - Existing software code runs faster, without requiring software ... Hyper-threading improves the scaling of both multithreaded and message passing parallel codes ...

Existing software code runs faster, without requiring software ... Hyper-threading improves the scaling of both multithreaded and message passing parallel codes ...

| PowerPoint PPT presentation | free to view

Molecular phylogeny, taxonomy, and DNA-barcoding use of five markers in the sub-order Runciniformes (Mollusca, Opisthobranchia) PowerPoint PPT Presentation

Molecular phylogeny, taxonomy, and DNA-barcoding use of five markers in the sub-order Runciniformes (Mollusca, Opisthobranchia) - Molecular phylogeny, taxonomy, and DNA-barcoding use of five markers in the sub-order Runciniformes (Mollusca, Opisthobranchia) Chichvarkhin Anton, Chernyshev A.V ...

Molecular phylogeny, taxonomy, and DNA-barcoding use of five markers in the sub-order Runciniformes (Mollusca, Opisthobranchia) Chichvarkhin Anton, Chernyshev A.V ...

| PowerPoint PPT presentation | free to download

New approaches to language and prehistory from typology, genetics, and quantitative linguistics PowerPoint PPT Presentation

New approaches to language and prehistory from typology, genetics, and quantitative linguistics - Relationship between the Order of Object and Verb and the Order of Adjective and Noun ... Adjectives without Nouns. 28.1. Prefixing vs. Suffixing in ...

Relationship between the Order of Object and Verb and the Order of Adjective and Noun ... Adjectives without Nouns. 28.1. Prefixing vs. Suffixing in ...

| PowerPoint PPT presentation | free to view

Introduction to Molecular Phylogeny PowerPoint PPT Presentation

Introduction to Molecular Phylogeny - Xenopus ATGCATGGGCCAACATGACCAGGAGTTGGTGTCGGTCCAAACAGCGTT---GGCTCTCTA ... Xenopus ATGCATGGGCCAACATGACCAGGAGTTGGTGTCggtCCAAACAGCGTT---GGCTCTCTA ...

Xenopus ATGCATGGGCCAACATGACCAGGAGTTGGTGTCGGTCCAAACAGCGTT---GGCTCTCTA ... Xenopus ATGCATGGGCCAACATGACCAGGAGTTGGTGTCggtCCAAACAGCGTT---GGCTCTCTA ...

| PowerPoint PPT presentation | free to download

BIOLOGIA/MEDICINA PowerPoint PPT Presentation

BIOLOGIA/MEDICINA - BIOLOGIA/MEDICINA A Revolu o da Gen mica/Bioinform tica Hist ria da Biologia Molecular 1951 Fred Sanger, Amino Acid Sequence of Insulin 1953 Watson/Crick ...

BIOLOGIA/MEDICINA A Revolu o da Gen mica/Bioinform tica Hist ria da Biologia Molecular 1951 Fred Sanger, Amino Acid Sequence of Insulin 1953 Watson/Crick ...

| PowerPoint PPT presentation | free to download

BIN6002 project report PowerPoint PPT Presentation

BIN6002 project report - Through phylogenetic analysis (phylogenome approch), we want to place two ... Methods in Enzymology 224, 456-487. 1. 2. 3. 4. 5. Sequence data. Align Sequences ...

Through phylogenetic analysis (phylogenome approch), we want to place two ... Methods in Enzymology 224, 456-487. 1. 2. 3. 4. 5. Sequence data. Align Sequences ...

| PowerPoint PPT presentation | free to view

Phylip?????????????? PowerPoint PPT Presentation

Phylip?????????????? - Title: Author: sam Last modified by: sam Created Date: 5/18/2004 8:11:00 AM Document presentation format

Title: Author: sam Last modified by: sam Created Date: 5/18/2004 8:11:00 AM Document presentation format

| PowerPoint PPT presentation | free to view

Trees - Trees what might they mean? Calculating a tree is ... MUSCLE. CONSENSE ... for quartets of species and building the multispecies tree from the quartets) ...

Trees what might they mean? Calculating a tree is ... MUSCLE. CONSENSE ... for quartets of species and building the multispecies tree from the quartets) ...

| PowerPoint PPT presentation | free to view

Phylogenetic Inference PowerPoint PPT Presentation

Phylogenetic Inference - No transfer of genetic information by ... Algorithm choice is a contested, active research field. ... Order of input can be problematic. Jumble them! ...

No transfer of genetic information by ... Algorithm choice is a contested, active research field. ... Order of input can be problematic. Jumble them! ...

| PowerPoint PPT presentation | free to view

The CBSU Computational Biology Service Unit is a Cornell University bioinformatic core facility. PowerPoint PPT Presentation

The CBSU Computational Biology Service Unit is a Cornell University bioinformatic core facility. - Hardware: cbsusrv02, Dell PowerEdge 2550 2 Pentium 3 1.3GHz, 2GB RAM, 70GB HD; ... Hardware: Dell PowerEdge 4600, 2 Pentium Xeon 3.0GHz, 12GB RAM, 1.0TB HD; Dell ...

Hardware: cbsusrv02, Dell PowerEdge 2550 2 Pentium 3 1.3GHz, 2GB RAM, 70GB HD; ... Hardware: Dell PowerEdge 4600, 2 Pentium Xeon 3.0GHz, 12GB RAM, 1.0TB HD; Dell ...

| PowerPoint PPT presentation | free to view

Detecting language contact in Indo-European PowerPoint PPT Presentation

Detecting language contact in Indo-European - Each 'contact edge' has a relative probability of transmitting character states. Each character evolves down a tree contained within the network. ...

Each 'contact edge' has a relative probability of transmitting character states. Each character evolves down a tree contained within the network. ...

| PowerPoint PPT presentation | free to view

Comparative mitochondrial zygomycetes: bacterial-like Rnase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperm - Comparative mitochondrial zygomycetes: bacterial-like Rnase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperm

Comparative mitochondrial zygomycetes: bacterial-like Rnase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperm

| PowerPoint PPT presentation | free to download

Part 9 Phylogenetic Trees - Part 9 Phylogenetic Trees

Part 9 Phylogenetic Trees

| PowerPoint PPT presentation | free to view

The GENIUS Grid Portal - The GENIUS Grid Portal

The GENIUS Grid Portal

| PowerPoint PPT presentation | free to view

Statistical stuff: models, methods, and performance issues PowerPoint PPT Presentation

Statistical stuff: models, methods, and performance issues - Step 2: Correct the Hamming distances, using the CF distance calculation ... Brute-force calculation. Let E and F be the two internal nodes in the tree ((A,B),(C,D) ...

Step 2: Correct the Hamming distances, using the CF distance calculation ... Brute-force calculation. Let E and F be the two internal nodes in the tree ((A,B),(C,D) ...

| PowerPoint PPT presentation | free to download

Freek T. Bakker PowerPoint PPT Presentation

Freek T. Bakker - Biosystematics Group, Wageningen UR. The Netherlands. Optimising DNA barcode regions ... 'Using molecular data as species diagnostics isn't new, but global ...

Biosystematics Group, Wageningen UR. The Netherlands. Optimising DNA barcode regions ... 'Using molecular data as species diagnostics isn't new, but global ...

| PowerPoint PPT presentation | free to view

Discover the Microbes Within - Discover the Microbes Within

Discover the Microbes Within

| PowerPoint PPT presentation | free to view

??????SCI????? PowerPoint PPT Presentation

??????SCI????? - Title: SCI Author: Common Last modified by: Common Created Date: 12/27/2004 3:33:45 AM Document presentation format

Title: SCI Author: Common Last modified by: Common Created Date: 12/27/2004 3:33:45 AM Document presentation format

| PowerPoint PPT presentation | free to view

Toward a Campus-Wide Grid Computing System PowerPoint PPT Presentation

Toward a Campus-Wide Grid Computing System - Toward a Campus-Wide Grid Computing System An Overview of The Lattice Project Adam L. Bazinet and Michael P. Cummings Laboratory of Molecular Evolution

Toward a Campus-Wide Grid Computing System An Overview of The Lattice Project Adam L. Bazinet and Michael P. Cummings Laboratory of Molecular Evolution

| PowerPoint PPT presentation | free to view

Sciurid phylogeny and the evolution of African ground squirrels PowerPoint PPT Presentation

Sciurid phylogeny and the evolution of African ground squirrels - Part 1: Sciurid phylogeny. Higher level evolutionary relationships ... Marmots - Marmota. African ground squirrels Xerus. Family Sciuridae ...

Part 1: Sciurid phylogeny. Higher level evolutionary relationships ... Marmots - Marmota. African ground squirrels Xerus. Family Sciuridae ...

| PowerPoint PPT presentation | free to view

Future Challenges in Bioinformatics PowerPoint PPT Presentation

Future Challenges in Bioinformatics - Future Challenges in Bioinformatics Introduction Introduction: How RRX got involved Life sciences context: How bioinformatics came to be important

Future Challenges in Bioinformatics Introduction Introduction: How RRX got involved Life sciences context: How bioinformatics came to be important

| PowerPoint PPT presentation | free to view

A Parallel Implementation of UPGMA PowerPoint PPT Presentation

A Parallel Implementation of UPGMA - From the Tree of the Life Website, University of Arizona. Orangutan. Gorilla. Chimpanzee. Human. 12 Species of Campanulaceae. Phylogenetic Data ...

From the Tree of the Life Website, University of Arizona. Orangutan. Gorilla. Chimpanzee. Human. 12 Species of Campanulaceae. Phylogenetic Data ...

| PowerPoint PPT presentation | free to download

The Lattice Project - A Grid Computing System PowerPoint PPT Presentation

The Lattice Project - A Grid Computing System - The Lattice Project - A Grid Computing System Michael P. Cummings Laboratory of Molecular Evolution Center for Bioinformatics and Computational Biology

The Lattice Project - A Grid Computing System Michael P. Cummings Laboratory of Molecular Evolution Center for Bioinformatics and Computational Biology

| PowerPoint PPT presentation | free to view

Impacts of beach nourishment on loggerhead and green turtles in Brevard County, Florida PowerPoint PPT Presentation

Impacts of beach nourishment on loggerhead and green turtles in Brevard County, Florida - Abstract: The volvocine algae (Volvox and its close relatives) represent a ... In Volvox, among four distinct developmental programs(1) Methods: ...

Abstract: The volvocine algae (Volvox and its close relatives) represent a ... In Volvox, among four distinct developmental programs(1) Methods: ...

| PowerPoint PPT presentation | free to view

Phylogenetic trees - In a 'binary' tree, all nodes have degree 1 or 3, except the ... Evolutionary linguistics. How to estimate distances? T. Jukes and C. Cantor. Berkeley, 1969 ...

In a 'binary' tree, all nodes have degree 1 or 3, except the ... Evolutionary linguistics. How to estimate distances? T. Jukes and C. Cantor. Berkeley, 1969 ...

| PowerPoint PPT presentation | free to view

Comparison of methods PowerPoint PPT Presentation

Comparison of methods - Closely related to ML methods, differing only in ... Bayes described this in 1790, and controversy among statisticians over its ... Nat Rev Genet 4, 275-284. ...

Closely related to ML methods, differing only in ... Bayes described this in 1790, and controversy among statisticians over its ... Nat Rev Genet 4, 275-284. ...

| PowerPoint PPT presentation | free to view

Detecting language contact in Indo-European - Detecting language contact in Indo-European Tandy Warnow The Program for Evolutionary Dynamics at Harvard The University of Texas at Austin (Joint work with Don Ringe ...

Detecting language contact in Indo-European Tandy Warnow The Program for Evolutionary Dynamics at Harvard The University of Texas at Austin (Joint work with Don Ringe ...

| PowerPoint PPT presentation | free to download

Mrbayes PowerPoint PPT Presentations