Improved ZST and BST Approximation Algorithms. Zero-Skew Trees ... ( Planar ZST / BST. Tight Analysis of the MST Heuristic for MSPT. The MSPT Problem ...
UC Riverside, March 27, 2003. 2. Outline. Challenges for nanoscale VLSI and DNA systems. New framework for ... Higher reaction speed. Higher parallelism ...
Title: Combinatorial Optimization Problems in Computational Biology Author: Ion Mandoiu Last modified by: Ion Mandoiu Created Date: 4/23/2004 6:09:34 AM
Haplotype Inference by Entropy Minimization Ion Mandoiu and Bogdan Pasaniuc, CSE Department, University of Connecticut Haplotype Inference by Entropy Minimization Ion ...
Zero-Skew Tree: rooted tree in which all root-to-leaf paths have the same length ... lower-bound on optimum ZST length. Converting spanning tree to zero-skew ...
High-Throughput SNP Genotyping by SBE/SBH Ion Mandoiu and Claudia Prajescu, CSE Department, University of Connecticut SBE/SBH Assay Steps TTGC Synthesize primers ...
Title: WADS01, Aug 8-10, Providence, RI Author: Ion Mandoiu Last modified by: Ion Mandoiu Created Date: 4/19/1995 10:16:14 AM Document presentation format
Genotype Error Detection using Hidden Markov Models of Haplotype Diversity Ion Mandoiu CSE Department, University of Connecticut Joint work with Justin Kennedy and ...
Scaffolding Draft Genomes Using Paired Sequencing Data. James Lindsay, Jin Zhang, Thomas Farnham, Yufeng Wu, Rachel O Neill, Ion Mandoiu (University of
F.F. Dragan (Kent State) A.B. Kahng (UCSD) I. Mandoiu (Georgia Tech/UCLA) S. Muddu (Silicon Graphics) A. Zelikovsky (Georgia State) Global Buffering via Buffer Blocks ...
Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment, and Buffer/Wire Sizing I. Mandoiu, A.B. Kahng Floorplan Evaluation with Timing-Driven ...
Title: PowerPoint Presentation Author: Ion Mandoiu Last modified by: albrecht Created Date: 8/26/2001 7:08:50 PM Document presentation format: On-screen Show
Annual Review September 2003. Minimizing Manufacturing Cost. for Multi-Project Wafer ... Calibrating Achievable Design. I. Mandoiu and A. Zelikovsky ...
Algorithms for Biochip Design and Optimization Ion Mandoiu Computer Science & Engineering Department University of Connecticut Overview Driver Biochip Applications ...
Title: Can Recursive Bisection Alone Produce Routable Placements? Last modified by: Ion Mandoiu Created Date: 9/30/1996 6:28:10 PM Document presentation format
Subfield Scheduling for Througput Maximization in Electron-beam Photomask Fabrication S. Babin*, A.B. Kahng, I.I. Mandoiu, S. Muddu CSE & ECE Depts., University of ...
Symmetric Connectivity With Minimum Power Consumption in Radio Networks G. Calinescu (IL-IT) I.I. Mandoiu (UCSD) A. Zelikovsky (GSU) Ad Hoc Wireless Networks ...
Potential BEOL Yield Gains from Non-Tree Route Augmentation B. Liu, A. B. Kahng, I. Mandoiu open short Given routing tree Augmenting edges Scanline Speedup
Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints Ion Mandoiu University of Connecticut CS&E Department Combinatorial Optimization ...
Exact and Approximation Algorithms for. DNA Tag Set Design. Ion Mandoiu ... CC. CCA. CAG. AGA. GAT. GATT. Tag sequence of c-tokens. End pos: 2 3 4 5 6 7. c-token: CC ...
Genotype Error Detection using Hidden Markov Models of Haplotype Diversity Justin Kennedy, Ion Mandoiu, Bogdan Pasaniuc CSE Department, University of Connecticut
2nd SECABC Fall Workshop on Biocomputing. Oct. 27, 2005. SBE/SBH Assay Steps ... Rise temperature to denature double stranded genomic DNA then reduce temperature ...
The option that gives the Maximum Required Arrival Time at root is chosen ... for Slew Rate and Reliability Control. C. Alpert, A. Kahng, B. Liu, I. Mandoiu, A. ...
The Self-Avoiding Traveling Salesman Problem: A Formulation for Reduction. of Resist Heating Effects in Mask Production. A.B. Kahng, I. Mandoiu and S. Muddu -- UCSD ...
Annual Review September 2001. Floorplan Evaluation with Timing-Driven Global. Wireplanning, Pin Assignment, and Buffer/Wire Sizing. I. Mandoiu, A.B. Kahng ...
Alexander C. Wei et. al, Localized resist heating due to electron-beam patterning during photomask fabrication , Proceedings of SPIE, Vol. 4186(2001), pp. 482-493.
C.A.D. Theme Technical Review June 2002. Potential BEOL Yield Gains from ... Enables implementation of line-scanning algorithm which speeds up greedy MRTA ...
Factorial HMM model of genotype data. Algorithms for genotype ... Based on haplotypes using Baum-Welch algo, or. Based on genotypes using EM [Rastas et al. 05] ...
... formulation Provably good approximation of fractional MTMCF Provably good rounding ... linear programming ... relaxation can be solved exactly using linear ...
Existence Barcoding gap ... 3.0 Microsoft Office Excel Chart Model-based species identification using DNA barcodes Outline Background on DNA barcoding ...
Flag genotype as an error if L(T')/L(T) R, where R is the detection ... [Becker et al. 06] resequenced all trio members at 41 loci flagged by FAMHAP-3 ...
Title: PowerPoint Presentation Author: Hydra Group CS&E Last modified by * Created Date: 8/29/2002 10:09:00 PM Document presentation format: Letter Paper (8.5x11 in)
CLIP-like method: move the cluster that v belongs to */ Reset the gains of all nodes to zero ... CLIP Algorithm. v. CLIP. v. Reminiscent of CLIP (Deng et al. ...
Quasispecies Assembly Using Network Flows Alex Zelikovsky Georgia State University Joint work with Kelly Westbrooks Georgia State University Irina Astrovskaya Georgia ...
Combinatorial Algorithms for Maximum Likelihood Tag SNP Selection and Haplotype Inference ... Diploid organisms: cells have two homologous sets of chromosomes ...
Title: On Relevance of Wire Load Models Author: Cadence Design Systems, Inc. Last modified by: Puneet Gupta Created Date: 3/27/2001 8:12:10 AM Document presentation ...
Yamacraw, Fall 2002. Power Efficient Range Assignment in ... NP-hardness [Clementi,Penna&Silvestri 00] MST gives factor 2 approximation [Kirousis et al. 00] ...
New Graph Bipartizations for Double-Exposure, Bright Field Alternating Phase-Shift Mask Layout ... Assign 0, 180 phase regions such that critical features with ...
Hot- spots. r-l=d. xmax. h. PAMP Primer Selection Problem for Anchored ... Assuming the UNIQUE GAMES conjecture, PAMP-1SDEL (and hence, PAMP-DEL) cannot be ...
Four nucleotide types: A,C,T,G. Normally double stranded. A's paired with T's. C's paired with G's ... Fingerprints n distinguishers. 34. Example. Given ...