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LSIDs do not require any central registration before they can be used (c.f. DOI) ... Every time an LSID is encountered, or only when a client requests it? ...
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GUID to a property type, eg the ID of the property 'creator' ... DublinCore handy set of basic descriptive elements, such as title, creator, language, etc ...
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RDF, Ontologies and Metadata, Edinburgh, 7-9/6/06. Outline. Taverna Workbench: ... compose web services. execute. discover. audit/provenance. myGrid. eScience project ...
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TAPIR. Unification of BioCASe and DiGIR. No RDF, Objects or GUIDs here yet! ... Search/Query More problematic BioCASe, DiGIR, TAPIR, SPARQL, other? Thank You ...
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Data sharing is fundamental to biodiversity and taxonomic data applications, Previous attempts to facilitate sharing have had limited success ...
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All resources are identified by LSIDs. URIs are LSIDs: valid RDF ... Resolvers map LSIDs to data or metadata. Resolvers need ... LSID allocation services? ...
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More and more calls for information about species. What is this? ... Field notebooks. What do we need to do? Label each piece of information (LSIDs) ...
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Darwin Core (DiGIR), ABCD (BioCASE), TAPIR. GUIDs, LSIDs. Data sustainability. data policy ... data as digital records (compatible with BioCASE/DiGIR/TAPIR protocols) ...
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Multiple classification trees (ITIS, MSW limited) ... Works with Rod's tester. One warning not fatal... June 10, 2006. Jessie Kennedy/Rob Gales ...
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Session V: Life Science Identifiers - Use Cases, Future Directions. Recent History ... If we could not agree on a data standard, could we at least agree on how we ...
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LSID Mashup (Morphster: Morphological Phyloinformatics) Professor ... Compare to something familiar, Mesquite. Browse, collect information from diverse sources ...
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Short Term (Sept 2003) Harden Notification. More Management Information Queries ... allow distribution over multiple dbs. support interlinking of data across ...
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Providers (DiGIR, DiGIR2, BioCASe, TAPIR) Browser Plugins (MSIE, Firefox) ... Provider Protocol: TAPIR. No explicit support for GUIDs ...
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Life Science Identifiers. Official standard ... LSID Resources. LSID Articles and code from IBM ... SEEK is funded by National Science Foundation award 0225676. ...
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Neighbours need to learn from each other because they share biodiversity. Share similar problems and are often at same ... Set up the TAPIR/TCS name provider. ...
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BioMOBY an biological database interoperability program (biomoby.org) ... A collection's database record of the specimen? What about multiple labels? ...
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Researcher. Neurologist. Geneticist. Molecular. Biologist. Cell Biologist. Data Integration Today: ... Click to edit Master text styles. Second level. Third level ...
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Established in 2000 through non-binding MOU (25 countries 31 organizations) ... TAPIR (TDWG Access Protocol for Information Retrieval) TDWG GUIDs ...
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Names can change when circumstances change. Jonathon ... Pokemon gene. Pokemon causes cancer. Funny! Not funny. Zbtb7. Zbtb7. LSID parts. Opaque is a myth ...
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Based on the myGrid Information Model. Stores user and provenance data ... Browses data elements via the mIR service interface. 9/6/09. myGrid Developers' Day ...
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Global Biodiversity Information Facility. Royal Botanic Garden Edinburgh ... Bishop Museum. Many other contributors. www.BiodiversityCollectionsIndex.org ...
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Government funding for repository development (6 developers) ... Australian Plant Phenomics Network ... Taxon concepts, gazetteer terms, mouse ontology, etc. ...
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LSID: Life Science Identifier. URN specification in progress ... Faithfully record them as ontological instance data. RDF graphs (one for each Taverna run) ...
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Standard Java LSID framework with Tomcat. Really easy to set up (most time spent ... String url = 'http://localhost/cabihost/Fungus.asmx/NameFullByKey?NameLsid ...
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MODS/METS approach Library of Congress & TREC (NIST) for funding/collaboration ... 2 standard to be submitted (minus MODS or METS work) for initial review; due ...
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Provide a measure of fitness for use' Develop an infrastructure. so that ... Journal articles can refer back to these information sources - dynamically ...
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'Extend scientists ability to steer in-silico experiments beyond current ... immutable, but not immortal = all provenance data. where, when and how to use them ...
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Alan Ruttenberg, Oct 3, 2006 HCLS F2F. Representing URI Resolution in OWL. Alan Ruttenberg (responsible for errors) Matthias Samwald. Jonathan Rees ...
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Automated workflows produce lots of heterogeneous data ... runBy. e.g. BLAST @ NCBI. run for. Organisation level provenance. Process level provenance ...
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Knowledge and Provenance: A knowledge model perspective
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Aggregation - gathering. Integration - merging. Comparison - differencing. Any idea? 30350027 ... Aggregation of repeated run. AC005089. BLASTReport. urn:lsid: ...
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Title: EPSRC demo Williams Progress Author: Chris Wroe Last modified by: carole Created Date: 3/19/2004 8:11:42 AM Document presentation format: On-screen Show
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The group is concerned with developing standard data models for representing ... Date & time to be announced. More as the week progresses...
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myGrid/Taverna Provenance. Daniele Turi. University of Manchester ... PEP decodes the response and either allows data/metadata to be returned to the ...
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System through which a client interacts with multiple sources of ... Clarence Kwan. Michael Ng. Peter Pichlak. Lixin Shen. Contact. http://www.biomoby.org ...
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Distance Perception in Real and Virtual Environments Jodie M. Plumert Department of Psychology Joseph K. Kearney James F. Cremer Department Of Computer Science
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Executive Secretary, ICZN, c/o Natural History Museum, ... Nomenclator. Classification B. Subjective layer (classifications) Objective layer (nomenclators) ...
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http://www.genomenewsnetwork.org/articles/05_02/spiderman.php ... 1 4 1 2 1 0. 1 5 1 2 1 1. 1 6 1 2 1 0. XML Example. What is XML? eXtensible Markup Language ...
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Validation and annotation of data during indexing. Is country name recognisable? ... Services to list provider countries, providers by country, and data resources by ...
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Revolutionizing taxonomy through an open-access web-register for animal names ... for tool to directly serve taxonomy data to GBIF. Global Biodiversity ...
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Added: images (drawings and photos), conservation and noxious weed status, maps, ... in KE-EMu database, NSW Collections, used for our herbarium and Gardens ...
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Chris Taylor. Phil Jones. Nisha Vinod. University of Manchester. Simon Hubbard. Steve Oliver ... A.) U.C.L.. David Jones. Christine Orengo. Melissa Pentony (R.A. ...
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Morphbank (U. Florida) from project to document morphological characters (Rohnquist, Riccardi) U.T. Austin X-Ray CT facility to scans of paleo and very small ...
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Outline. Problem. Framework : Open Microscopy Environment. Tool-Issues. Page 6. Boston, ... annotation1, a:body, ex:somePhenotype) (?annotation2, a:annotates, ?image) ...
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GROWL - Sparrow - Concrete Abstract Syntax - DIG ... GROWL, Sparrow, ... etc conversion tools: what do projects have in terms of such ...
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open world of services. open to wider eScience context. open to user feedback ... DE PROBABLE UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE ...
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Hound. Processor. Bio. MART. SCUFL. Application data flow ... To store knowledge provenance. Taverna workflow workbench & plugins. Ensure automated recording ...
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A part of the EPSRC myGrid project. Collectively aimed at facilitating standard ... Assume an open world of services, most of which we do not control directly. ...
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... Goble, Chris Greenhalgh, Mark Greenwood, Yikun Guo, Simon Harper, Keith Hayward, ... Syndrome case study is from Hannah Tipney, May Tassabehji, Andy Brass, ...
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People view a target, turn and walk a short distance, then point back at target. ... How closely did time-to-walk estimates correspond in real and virtual ...
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specialised services such as AMBIT text extraction. Experiment life cycle. Executing experiments ... AMBIT. Text Extraction Service. Provenance mgt ...
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A myGrid Project Tutorial (3) Dr Mark Greenwood University of Manchester With considerable help from Justin Ferris, Peter Li, Phil Lord, Chris Wroe and the rest of ...
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Knowledge-based Middleware for. BioGrid services from the myGrid Project. ... Base services that tools that will constitute the experiments ...
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Integrating Live Plant Images with Other Types of Biodiversity Records Steve Baskauf Vanderbilt Dept. of Biological Sciences http://bioimages.vanderbilt.edu/
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Plus terminology definitions multiple. description projects sharing a ... Example: Specify contains a name and publication 'reduced data set' with editors ...
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Middleware for in silico Biology
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