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LSIDs do not require any central registration before they can be used (c.f. DOI) ... Every time an LSID is encountered, or only when a client requests it? ...
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GUID to a property type, eg the ID of the property 'creator' ... DublinCore handy set of basic descriptive elements, such as title, creator, language, etc ...
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RDF, Ontologies and Metadata, Edinburgh, 7-9/6/06. Outline. Taverna Workbench: ... compose web services. execute. discover. audit/provenance. myGrid. eScience project ...
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Standard Java LSID framework with Tomcat. Really easy to set up (most time spent ... String url = 'http://localhost/cabihost/Fungus.asmx/NameFullByKey?NameLsid ...
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Providers (DiGIR, DiGIR2, BioCASe, TAPIR) Browser Plugins (MSIE, Firefox) ... Provider Protocol: TAPIR. No explicit support for GUIDs ...
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Extra layer of services on top of LSID (search, harvesting, triple stores) Coordinate with other experiment development activities (dev. track) February 1-3, 2006 ...
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LSID Mashup (Morphster: Morphological Phyloinformatics) Professor ... Compare to something familiar, Mesquite. Browse, collect information from diverse sources ...
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Morphbank (U. Florida) from project to document morphological characters (Rohnquist, Riccardi) U.T. Austin X-Ray CT facility to scans of paleo and very small ...
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Multiple classification trees (ITIS, MSW limited) ... Works with Rod's tester. One warning not fatal... June 10, 2006. Jessie Kennedy/Rob Gales ...
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TAPIR. Unification of BioCASe and DiGIR. No RDF, Objects or GUIDs here yet! ... Search/Query More problematic BioCASe, DiGIR, TAPIR, SPARQL, other? Thank You ...
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Data sharing is fundamental to biodiversity and taxonomic data applications, Previous attempts to facilitate sharing have had limited success ...
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All resources are identified by LSIDs. URIs are LSIDs: valid RDF ... Resolvers map LSIDs to data or metadata. Resolvers need ... LSID allocation services? ...
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Life Science Identifiers. Official standard ... LSID Resources. LSID Articles and code from IBM ... SEEK is funded by National Science Foundation award 0225676. ...
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Aggregation - gathering. Integration - merging. Comparison - differencing. Any idea? 30350027 ... Aggregation of repeated run. AC005089. BLASTReport. urn:lsid: ...
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'The International HapMap Project is a multi-country effort to identify and ... ncbi_B35 sanger urn:lsid:illumina.hapmap.org:Protocol:Golden_Gate_1.0.0: ...
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Names can change when circumstances change. Jonathon ... Pokemon gene. Pokemon causes cancer. Funny! Not funny. Zbtb7. Zbtb7. LSID parts. Opaque is a myth ...
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Simple method to address current need to exchange synonymy in a standards/future ... Unique Identifier methods used to designate taxa from contributing sources (LSID, ...
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LSID: Life Science Identifier. URN specification in progress ... Faithfully record them as ontological instance data. RDF graphs (one for each Taverna run) ...
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Haystack. Using Haystack to visualise data/ metadata wrt to the information model ... Haystack viewing MIR via LSID. Haystack editing Williams Info ...
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More and more calls for information about species. What is this? ... Field notebooks. What do we need to do? Label each piece of information (LSIDs) ...
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Darwin Core (DiGIR), ABCD (BioCASE), TAPIR. GUIDs, LSIDs. Data sustainability. data policy ... data as digital records (compatible with BioCASE/DiGIR/TAPIR protocols) ...
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PEDRo. collection of descriptions of experimental data sets in proteomics ... URN:LSID:ispider.man.ac.uk:pedro.protein:99. System Architecture. Sources wrapped ...
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No generic support for domain data models. Make use of MIR's existing types support ... click through' to referenced entities. Review/revise LSID support in MIR ...
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User sends LSID ref and ... credentials are passed to a User Directory ... PEP decodes the response and either allows data/metadata to be returned to the ...
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Session V: Life Science Identifiers - Use Cases, Future Directions. Recent History ... If we could not agree on a data standard, could we at least agree on how we ...
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Identification keys for CoL taxa? Jones, White & Orme. Tracking Taxon ... metadata attached to species (set of relationships between relevant higher taxa) ...
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BioMOBY an biological database interoperability program (biomoby.org) ... A collection's database record of the specimen? What about multiple labels? ...
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Automated workflows produce lots of heterogeneous data ... runBy. e.g. BLAST @ NCBI. run for. Organisation level provenance. Process level provenance ...
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myGrid/Taverna Provenance. Daniele Turi. University of Manchester ... PEP decodes the response and either allows data/metadata to be returned to the ...
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Publishing collaborations: Making databases more like journals ... Tagging and social bookmarking: New methods of annotation and navigation ...
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Neighbours need to learn from each other because they share biodiversity. Share similar problems and are often at same ... Set up the TAPIR/TCS name provider. ...
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'I3C promotes and guides the development of interoperable software ... Drag objects from palette. Services and data sources discovered in the registry ...
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Researcher. Neurologist. Geneticist. Molecular. Biologist. Cell Biologist. Data Integration Today: ... Click to edit Master text styles. Second level. Third level ...
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Established in 2000 through non-binding MOU (25 countries 31 organizations) ... TAPIR (TDWG Access Protocol for Information Retrieval) TDWG GUIDs ...
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A part of the EPSRC myGrid project. Collectively aimed at facilitating standard ... Assume an open world of services, most of which we do not control directly. ...
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Executive Secretary, ICZN, c/o Natural History Museum, ... Nomenclator. Classification B. Subjective layer (classifications) Objective layer (nomenclators) ...
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Hilton Hawaiian Village Beach Resort & Spa, Honolulu, Thursday June 10, 2004 ... Hannah Tipney, May Tassabehji, Andy Brass, St Mary's Hospital, Manchester, UK ...
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'Extend scientists ability to steer in-silico experiments beyond current ... immutable, but not immortal = all provenance data. where, when and how to use them ...
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Knowledge and Provenance: A knowledge model perspective
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Be permanent/resolve to data in a repeatable manner (or not resolve at all) ... Overkill? Canonical XML (W3C Recommendation) Not necessary for byte-identity ...
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Revolutionizing taxonomy through an open-access web-register for animal names ... for tool to directly serve taxonomy data to GBIF. Global Biodiversity ...
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Short Term (Sept 2003) Harden Notification. More Management Information Queries ... allow distribution over multiple dbs. support interlinking of data across ...
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De facto standard by Sashimi. Instrumentation. Data processing. Separation technique ... http://sashimi.sourceforge.net/software_glossolalia.html. ScanFeatures ...
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Experiment = 1 Slide 2 Probes. Expression table is huge; must re-index frequently ... Probe Data. Studies, Experiments, and Replicates. Experiment. Study. Hyb ...
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Observe and describe phenomena and study existing knowledge ... chromosome 20q13.1-13.2 Contains two putative novel genes, ESTs, STSs and GSSs, ...
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External domain services. No control or influence over service providers ... Registration. Event Notification Service. GGF11 Semantic Grid Applications Workshop, ...
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Coordinate units of work and the flow of documents according to ... Ingest. Early adopters. Pioneers. Pioneers. Conservatives. Early adopters. Pioneers. myGrid ...
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http://www.genomenewsnetwork.org/articles/05_02/spiderman.php ... 1 4 1 2 1 0. 1 5 1 2 1 1. 1 6 1 2 1 0. XML Example. What is XML? eXtensible Markup Language ...
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Middleware for in silico Biology
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Rage. 419. 4,821,028. 496. Mad. 2,787. 34,921,560. 565. Cage. 70. 864,724. 60. Aged. Database Usage (Mb) ... Clones are related to Wells which are related to ...
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Based on the myGrid Information Model. Stores user and provenance data ... Browses data elements via the mIR service interface. 9/6/09. myGrid Developers' Day ...
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Title: EPSRC demo Williams Progress Author: Chris Wroe Last modified by: carole Created Date: 3/19/2004 8:11:42 AM Document presentation format: On-screen Show
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Exporting MAGE-ML from the Stanford Microarray Database Using Perl MAGE-stk ... Generated by single method to ensure uniformity ...
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Clones are related to Wells which are related to Spots on a Slide (Array) ... Wei Liang Miner, MIDAS. John Braisted Web MEV. Nirmal Bhagabhati MEV Statistical Analysis ...
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MODS/METS approach Library of Congress & TREC (NIST) for funding/collaboration ... 2 standard to be submitted (minus MODS or METS work) for initial review; due ...
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