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HOMOLOGY MODELLING Modelado por homologia o comparativo PowerPoint PPT Presentation
HOMOLOGY MODELLING Modelado por homologia o comparativo - Que es el modelado por homolog a? ... Su secuencia de amino cidos (Estructura primaria) ... Alineamientos m ltiples mejores que los de a pares ...
Que es el modelado por homolog a? ... Su secuencia de amino cidos (Estructura primaria) ... Alineamientos m ltiples mejores que los de a pares ...
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Homology and Homologs PowerPoint PPT Presentation
Homology and Homologs - Homology and Homologs. Homology just means sequence similarity by ... gi|24640218|ref|NP_572350.2| CG3126-PA, isoform A [Drosophila melanogaster] Length=1571 ...
Homology and Homologs. Homology just means sequence similarity by ... gi|24640218|ref|NP_572350.2| CG3126-PA, isoform A [Drosophila melanogaster] Length=1571 ...
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Homology Modelling PowerPoint PPT Presentation
Homology Modelling - Tutorial Homology Modelling A Brief Introduction to Homology Modeling Sequence-Structure-Function Relationships Proteins of similar sequences fold into similar ...
Tutorial Homology Modelling A Brief Introduction to Homology Modeling Sequence-Structure-Function Relationships Proteins of similar sequences fold into similar ...
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Anatomical Homology PowerPoint PPT Presentation
Anatomical Homology - Anatomical Homology Anatomical Homolgy Von Baer - Comparative Embryology Anatomical Homology/Analogy Gene/Gene Expression Homology Signaling pathways Anatomical ...
Anatomical Homology Anatomical Homolgy Von Baer - Comparative Embryology Anatomical Homology/Analogy Gene/Gene Expression Homology Signaling pathways Anatomical ...
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oah homologs PowerPoint PPT Presentation
oah homologs - Title: Slide 1 Author: Lovley Lab Last modified by: Lovley Lab Created Date: 7/20/2005 7:31:31 PM Document presentation format: Custom Company: University of ...
Title: Slide 1 Author: Lovley Lab Last modified by: Lovley Lab Created Date: 7/20/2005 7:31:31 PM Document presentation format: Custom Company: University of ...
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Homology Modeling PowerPoint PPT Presentation
Homology Modeling - Homology Modeling Homology Modeling Presentation Fold recognition Model building Loop building Sidechain modeling Refinement Testing methods: the CASP experiment ...
Homology Modeling Homology Modeling Presentation Fold recognition Model building Loop building Sidechain modeling Refinement Testing methods: the CASP experiment ...
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Homology PowerPoint PPT Presentation
Homology - Homologous structures are structures that are assumed to have a ... The fore limbs of the newt, lizard and man develop from different parts. of the embryo. ...
Homologous structures are structures that are assumed to have a ... The fore limbs of the newt, lizard and man develop from different parts. of the embryo. ...
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Morphological Homology PowerPoint PPT Presentation
Morphological Homology - ... Lobe finned fishes Amphibian-like fishes Fish-like amphibians Amphibians Reptile-like amphibians Amphibian-like reptiles Reptiles Etc. Microevolution vs ...
... Lobe finned fishes Amphibian-like fishes Fish-like amphibians Amphibians Reptile-like amphibians Amphibian-like reptiles Reptiles Etc. Microevolution vs ...
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Similarity vs. Homology PowerPoint PPT Presentation
Similarity vs. Homology - Sir Richard Owen, Lectures on the Comparative Anatomy and Physiology of the ... Orthology. Orthologs: Hemoglobin A. Sharing a Common Ancestor: Paralogy ...
Sir Richard Owen, Lectures on the Comparative Anatomy and Physiology of the ... Orthology. Orthologs: Hemoglobin A. Sharing a Common Ancestor: Paralogy ...
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Homology PowerPoint PPT Presentation
Homology - The q-Simplices and all possible linear combinations in a Simplicial Complex ... A Chain complex is a sequence of abelian (commutative) ...
The q-Simplices and all possible linear combinations in a Simplicial Complex ... A Chain complex is a sequence of abelian (commutative) ...
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Simplicial Homology PowerPoint PPT Presentation
Simplicial Homology - Introduction to Simplicial Homology. Prerequisite Definitions. Definition of a Simplex ... x = S ?ivi, 0 ?i 1, S ?i = 1. i=0 i=0 ...
Introduction to Simplicial Homology. Prerequisite Definitions. Definition of a Simplex ... x = S ?ivi, 0 ?i 1, S ?i = 1. i=0 i=0 ...
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Homology Modeling PowerPoint PPT Presentation
Homology Modeling - pre-processing, singles, pairs. Desmet, Mayo. reduction in ... de-couple interaction graph into bi-connected components representing local dependencies ...
pre-processing, singles, pairs. Desmet, Mayo. reduction in ... de-couple interaction graph into bi-connected components representing local dependencies ...
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Homology Modelling PowerPoint PPT Presentation
Homology Modelling - CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS TECHNICAL UNIVERSITY ... techniques to reduce time (from months to days) and cost (from $100.000 to $20.000/structure) ...
CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS TECHNICAL UNIVERSITY ... techniques to reduce time (from months to days) and cost (from $100.000 to $20.000/structure) ...
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PatternHunter: faster and more sensitive homology search PowerPoint PPT Presentation
PatternHunter: faster and more sensitive homology search - PatternHunter: faster and more sensitive homology search By Bin Ma, John Tromp and Ming Li B92902019 B92902033 B92902039
PatternHunter: faster and more sensitive homology search By Bin Ma, John Tromp and Ming Li B92902019 B92902033 B92902039
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Modern Homology Search PowerPoint PPT Presentation
Modern Homology Search - Modern Homology Search Ming Li Canada Research Chair in Bioinformatics Computer Science. U. Waterloo I want to show you how one simple theoretical idea can make big ...
Modern Homology Search Ming Li Canada Research Chair in Bioinformatics Computer Science. U. Waterloo I want to show you how one simple theoretical idea can make big ...
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Homology modelling PowerPoint PPT Presentation
Homology modelling - Two aligned proteins' The 8' Steps of Modelling. 1 Detect template. 2 Get alignment ... Keep only model and template. How to align: ASASASASASAS. YPYPYPYPYPYP ...
Two aligned proteins' The 8' Steps of Modelling. 1 Detect template. 2 Get alignment ... Keep only model and template. How to align: ASASASASASAS. YPYPYPYPYPYP ...
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Predicting 3D Protein Structure using Homology Modeling PowerPoint PPT Presentation
Predicting 3D Protein Structure using Homology Modeling - Title: Slide 1 Author: jenny Last modified by: jenny Created Date: 8/16/2006 12:43:09 PM Document presentation format: On-screen Show Other titles
Title: Slide 1 Author: jenny Last modified by: jenny Created Date: 8/16/2006 12:43:09 PM Document presentation format: On-screen Show Other titles
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Homology vs. Homoplasy PowerPoint PPT Presentation
Homology vs. Homoplasy - Homoplasy occurs when characters are similar, but are not derived ... Thylacine most closely related to Tasmanian devil. Thylacine. Timberwolf. Turkey vulture ...
Homoplasy occurs when characters are similar, but are not derived ... Thylacine most closely related to Tasmanian devil. Thylacine. Timberwolf. Turkey vulture ...
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Annotation transfer by homology PowerPoint PPT Presentation
Annotation transfer by homology - Extend function prediction through inclusion of structure ... Scored against Astral PDB90. 1.5% error rate in subfamily classification using top-scoring SHMM ...
Extend function prediction through inclusion of structure ... Scored against Astral PDB90. 1.5% error rate in subfamily classification using top-scoring SHMM ...
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Homology Modeling (advanced) PowerPoint PPT Presentation
Homology Modeling (advanced) - Deswal R, Singh R, Lynn AM, Frank R. Methods: Simple threading of sequence on human homologue ... AMBER (Peter Kollman, UCSF) CHARMM (Martin Karplus, Harvard) ...
Deswal R, Singh R, Lynn AM, Frank R. Methods: Simple threading of sequence on human homologue ... AMBER (Peter Kollman, UCSF) CHARMM (Martin Karplus, Harvard) ...
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Homologs, Orthologs and Paralogs PowerPoint PPT Presentation
Homologs, Orthologs and Paralogs - Homologs, Orthologs and Paralogs Identifying changes in the genome requires resolving evolutionary relationships for all bases. Homologues: Common descent from an ...
Homologs, Orthologs and Paralogs Identifying changes in the genome requires resolving evolutionary relationships for all bases. Homologues: Common descent from an ...
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Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation PowerPoint PPT Presentation
Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)
Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)
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Homology PowerPoint PPT Presentation
Homology - Collection. Assembling & Editing. Consensus sequence. Entire Genome. Sequence ... Annotation. Blasting. Metabolism pathways. Id of interest genes. Functional ...
Collection. Assembling & Editing. Consensus sequence. Entire Genome. Sequence ... Annotation. Blasting. Metabolism pathways. Id of interest genes. Functional ...
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Simpleminded molecular homology PowerPoint PPT Presentation
Simpleminded molecular homology - ... molecular ... Molecular homology. Two proteins in two different organisms may be encoded ... is of interest to molecular evolutionary biologists ...
... molecular ... Molecular homology. Two proteins in two different organisms may be encoded ... is of interest to molecular evolutionary biologists ...
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Lab 9.3a: Homology Modeling PowerPoint PPT Presentation
Lab 9.3a: Homology Modeling - Sequence alignment is the single most important step in homology modeling. ... LIG. Complete: Add ligands, substrates etc. to model. Analyse: Interpret and conclude ...
Sequence alignment is the single most important step in homology modeling. ... LIG. Complete: Add ligands, substrates etc. to model. Analyse: Interpret and conclude ...
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Persistent Homology and Sensor Networks PowerPoint PPT Presentation
Persistent Homology and Sensor Networks - Let X be a collection of points in a metric space ... X1 X2 X3 ... Xn. C0k. C01. C00. C0k-1. 0. C1k. C11. C10. C1k-1. 0. Cnk. Cn1. Cn0. Cnk-1. 0 ...
Let X be a collection of points in a metric space ... X1 X2 X3 ... Xn. C0k. C01. C00. C0k-1. 0. C1k. C11. C10. C1k-1. 0. Cnk. Cn1. Cn0. Cnk-1. 0 ...
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Day 2: Homology prediction PowerPoint PPT Presentation
Day 2: Homology prediction - Sequence similarity, Homology has the largest relevance for Molecular Function. ... However, aspects of the molecular function, like a transporter function, are ...
Sequence similarity, Homology has the largest relevance for Molecular Function. ... However, aspects of the molecular function, like a transporter function, are ...
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Homology Search Tools PowerPoint PPT Presentation
Homology Search Tools - Filtering is based on the observation that a good alignment usually includes ... The idea of filtration was used in FASTA, BLAST, BLAT, and PatternHunter. ...
Filtering is based on the observation that a good alignment usually includes ... The idea of filtration was used in FASTA, BLAST, BLAT, and PatternHunter. ...
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Homology Directed Repair PowerPoint PPT Presentation
Homology Directed Repair - Lecture #4. Homology Directed Repair. Analysis of Silencing with DSB Repair ... A deubiquitylating enzyme (isopeptidase, DUB) removes monubiquitin, is iteself ...
Lecture #4. Homology Directed Repair. Analysis of Silencing with DSB Repair ... A deubiquitylating enzyme (isopeptidase, DUB) removes monubiquitin, is iteself ...
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Detecting and Interpreting Genetic Homology PowerPoint PPT Presentation
Detecting and Interpreting Genetic Homology - 'The same organ in different animals under a variety of form and ... Orthology. Protein Orthology. Sharing a Common Ancestor: Paralogy. Functional Conservation ...
'The same organ in different animals under a variety of form and ... Orthology. Protein Orthology. Sharing a Common Ancestor: Paralogy. Functional Conservation ...
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Homology search of Defensins among different species PowerPoint PPT Presentation
Homology search of Defensins among different species - Homology search of Defensins among different species. HT05 Fall Research Training ... produced in primate leukocytes by the ligation of two truncated alpha-defensins. ...
Homology search of Defensins among different species. HT05 Fall Research Training ... produced in primate leukocytes by the ligation of two truncated alpha-defensins. ...
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Homology Modelling Course PowerPoint PPT Presentation
Homology Modelling Course - H = enthalpy. T = temperature. S = entropy. Why? ... In practice, we can approximate the enthalpy term H quite well. by molecular mechanics. ...
H = enthalpy. T = temperature. S = entropy. Why? ... In practice, we can approximate the enthalpy term H quite well. by molecular mechanics. ...
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Homology Modeling via Protein Threading PowerPoint PPT Presentation
Homology Modeling via Protein Threading - Cannot find new catalytic/binding sites. Brainstorm lack of activity vs activity ... in both the model and the correct structure in an 'alignment dependent' fashion ...
Cannot find new catalytic/binding sites. Brainstorm lack of activity vs activity ... in both the model and the correct structure in an 'alignment dependent' fashion ...
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Sequence alignment and homology PowerPoint PPT Presentation
Sequence alignment and homology - Classic molecular example is the parallel evolution ... Hoatzin. Pigeon. Horse. Chicken. Cow. Langur. Human. Calcium. binding. Conventional. Gene. duplication ...
Classic molecular example is the parallel evolution ... Hoatzin. Pigeon. Horse. Chicken. Cow. Langur. Human. Calcium. binding. Conventional. Gene. duplication ...
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Homology modeling with SWISSMODEL PowerPoint PPT Presentation
Homology modeling with SWISSMODEL - ... effects are mediated by the oestrogen receptor (ER) a ligand-inducible ... Oestrogen receptor. Two isoforms of ER are known: ER- a and ER ...
... effects are mediated by the oestrogen receptor (ER) a ligand-inducible ... Oestrogen receptor. Two isoforms of ER are known: ER- a and ER ...
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Introduction to Proteomics tools in Homology Modelingweb PowerPoint PPT Presentation
Introduction to Proteomics tools in Homology Modelingweb - Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...
Homology modeling, also known as comparative modeling, ... SCOP. http://scop.mrc-lmb.cam.ac.uk/scop/ CATH. http://www.cathdb.info/ DALI ...
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Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation PowerPoint PPT Presentation
Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)
Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)
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Xenolog: Homologs resulting from horizontal gene transfer PowerPoint PPT Presentation
Xenolog: Homologs resulting from horizontal gene transfer - Orthologs diverged only after speciation tend to have ... Nucleic acids. proteins. BIOMOLECULES!! LEARN TO USE THE INFORMATION THAT IS ALREADY OUT THERE! ...
Orthologs diverged only after speciation tend to have ... Nucleic acids. proteins. BIOMOLECULES!! LEARN TO USE THE INFORMATION THAT IS ALREADY OUT THERE! ...
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Homology Modeling: Principles, tools and techniques PowerPoint PPT Presentation
Homology Modeling: Principles, tools and techniques - ... and include the distance, angle and dihedral values ... Stereochemical bond, angle, dihedral, improper. Homology mainchain and sidechain dihedrals ...
... and include the distance, angle and dihedral values ... Stereochemical bond, angle, dihedral, improper. Homology mainchain and sidechain dihedrals ...
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generic hydrodynamic instability via contact homology PowerPoint PPT Presentation
generic hydrodynamic instability via contact homology - generic hydrodynamic instability via contact homology. robert ghrist. department of mathematics ... consider: steady, inviscid velocity fields on R3 / periodic ...
generic hydrodynamic instability via contact homology. robert ghrist. department of mathematics ... consider: steady, inviscid velocity fields on R3 / periodic ...
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Optimatization of a New Score Function for the Detection of Remote Homologs PowerPoint PPT Presentation
Optimatization of a New Score Function for the Detection of Remote Homologs - Optimatization of a New Score Function for the Detection of Remote Homologs Kann et al
Optimatization of a New Score Function for the Detection of Remote Homologs Kann et al
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Protein Homology Detection Using String Alignment Kernels PowerPoint PPT Presentation
Protein Homology Detection Using String Alignment Kernels - Problem: classification of protein sequence data into families and superfamilies ... SCOP: Structural Classification of Proteins ...
Problem: classification of protein sequence data into families and superfamilies ... SCOP: Structural Classification of Proteins ...
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Waiting Time and Seed Selection for Homology Search PowerPoint PPT Presentation
Waiting Time and Seed Selection for Homology Search - Classroom Experiment Estimating Waiting Time ... UGH!!! A faster way. Take small 'words' from A and find matches in the database first: ...
Classroom Experiment Estimating Waiting Time ... UGH!!! A faster way. Take small 'words' from A and find matches in the database first: ...
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CMEs in Soft X-rays, impulsive flares, and homology PowerPoint PPT Presentation
CMEs in Soft X-rays, impulsive flares, and homology - CMEs in Soft X-rays, impulsive flares, and homology. Early SXT literature by Uchida et al., Klimchuk et al, Hudson et al., Manoharan ...
CMEs in Soft X-rays, impulsive flares, and homology. Early SXT literature by Uchida et al., Klimchuk et al, Hudson et al., Manoharan ...
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Using Persistent Homology To Recover Spatial Information From Encounter Traces PowerPoint PPT Presentation
Using Persistent Homology To Recover Spatial Information From Encounter Traces - ... of the space has an effect on what encounter patterns are possible. ... Rufus from Kim Possible. 25% of the Errol Morris film Fast, Cheap & Out of Control ...
... of the space has an effect on what encounter patterns are possible. ... Rufus from Kim Possible. 25% of the Errol Morris film Fast, Cheap & Out of Control ...
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Alignment principles and homology searching using (PSI-)BLAST PowerPoint PPT Presentation
Alignment principles and homology searching using (PSI-)BLAST - 1981 Smith-Waterman local pair- wise alignment ... This probability follows the Poisson distribution (Waterman and Vingron, 1994) ...
1981 Smith-Waterman local pair- wise alignment ... This probability follows the Poisson distribution (Waterman and Vingron, 1994) ...
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Homology Modeling of the Human Olfactory Receptor O2D2 PowerPoint PPT Presentation
Homology Modeling of the Human Olfactory Receptor O2D2 - Olfactory Receptors are GPCRs. ... Templates chosen 1L9H (Bovine Rhodopsin), 1E12 (Halorhodopsin) and 1JGJ (Sensory Rhodopsin) ...
Olfactory Receptors are GPCRs. ... Templates chosen 1L9H (Bovine Rhodopsin), 1E12 (Halorhodopsin) and 1JGJ (Sensory Rhodopsin) ...
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Remote Homology detection: A motif based approach PowerPoint PPT Presentation
Remote Homology detection: A motif based approach - A method based on presence of discrete sequence motifs for ... The Blocks database combines various databases such as pFAM, PRINTs, ProDom, DOMO and InterPro. ...
A method based on presence of discrete sequence motifs for ... The Blocks database combines various databases such as pFAM, PRINTs, ProDom, DOMO and InterPro. ...
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PatternHunter: A Fast and Highly Sensitive Homology Search Method PowerPoint PPT Presentation
PatternHunter: A Fast and Highly Sensitive Homology Search Method - Mega-BLAST uses seeds of length 28. PatternHunter uses 'spaced seeds' ... (homology identity = 0.7, homology length=64) 111011001011010111, 1111000100010011010111, ...
Mega-BLAST uses seeds of length 28. PatternHunter uses 'spaced seeds' ... (homology identity = 0.7, homology length=64) 111011001011010111, 1111000100010011010111, ...
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Evolution of Highly Active Enzymes by Homology-Independent Recombination PowerPoint PPT Presentation
Evolution of Highly Active Enzymes by Homology-Independent Recombination - Evolution of Highly Active Enzymes by Homology-Independent ... alpha, beta, delta, zeta, theta, mu, pi, sigma, tau, phi, omega. G-site (GSH-binding domain) ...
Evolution of Highly Active Enzymes by Homology-Independent ... alpha, beta, delta, zeta, theta, mu, pi, sigma, tau, phi, omega. G-site (GSH-binding domain) ...
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Basics of Homology Modeling PowerPoint PPT Presentation
Basics of Homology Modeling - ... curie.utmb. ... http://curie.utmb.edu/mpack/ BLAST in PDB. Secondary structure servers. Fold ... Telnet to curie.utmb.edu in your account (model1, ...
... curie.utmb. ... http://curie.utmb.edu/mpack/ BLAST in PDB. Secondary structure servers. Fold ... Telnet to curie.utmb.edu in your account (model1, ...
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Applications of Homology Modeling PowerPoint PPT Presentation
Applications of Homology Modeling - iron/transferrin complex -Signaling and regulation of iron in bloodstream. ... Less interaction of the helix with the transferrin receptor. Seriousness of mutation ...
iron/transferrin complex -Signaling and regulation of iron in bloodstream. ... Less interaction of the helix with the transferrin receptor. Seriousness of mutation ...
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Lecture 9.2: Homology and Structural Similarity (What do when you have no structure ...) PowerPoint PPT Presentation
Lecture 9.2: Homology and Structural Similarity (What do when you have no structure ...) - ... Fully automated protein structure prediction using ISITES, HMMSTR and ROSETTA. ... Rosetta: Monte carlo fragment move based structure generation, Bayesian ...
... Fully automated protein structure prediction using ISITES, HMMSTR and ROSETTA. ... Rosetta: Monte carlo fragment move based structure generation, Bayesian ...
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Homology: A punt to clear up some confusion: PowerPoint PPT Presentation
Homology: A punt to clear up some confusion: - Large tortoises were very common on the Galapagos. ... The tortoises on different islands often had some ... of tortoise, each endemic. to a specific volcanoe. ...
Large tortoises were very common on the Galapagos. ... The tortoises on different islands often had some ... of tortoise, each endemic. to a specific volcanoe. ...
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Accelerating sequence alignment and homology search algorithms PowerPoint PPT Presentation
Accelerating sequence alignment and homology search algorithms - Smith-Waterman, Gotoh, etc., guarantee the best-scoring alignment ... Acceleration of the Smith-Waterman algorithm. Identify strong diagonals in dotplots ...
Smith-Waterman, Gotoh, etc., guarantee the best-scoring alignment ... Acceleration of the Smith-Waterman algorithm. Identify strong diagonals in dotplots ...
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Targeted gene mutation of the mviN locus homolog in Francisella tularensis LVS PowerPoint PPT Presentation
Targeted gene mutation of the mviN locus homolog in Francisella tularensis LVS - can be easily disseminated or transmitted from person to person; ... Start codon primer. Stop codon primer ~ 1000 bp. Wild-type gene. 200 bp. 1000 bp. mutant ...
can be easily disseminated or transmitted from person to person; ... Start codon primer. Stop codon primer ~ 1000 bp. Wild-type gene. 200 bp. 1000 bp. mutant ...
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