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These algorithms are ~50 times faster than Smith-Waterman ... is detected, the two sequences are aligned with Smith-Waterman algorithm ...
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Intensity background = level of expression. Red in experimental conditions ... sporulation. mating type. Cell cycle. Late activation during diauxic shift ...
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Laboratoire de Bioinformatique des G nomes et des R seaux (BiGRe) http://www.bigre.ulb.ac.be ... Smith-Waterman (pairwise, local) Smith, T. F. & Waterman, M. S. (1981) ...
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A species tree aims at representing the evolutionary relationships between species. ... kitsch (rooted) retree. Neighbor -joining. neighbor. Bootstrapping. seqboot ...
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How can we estimate the variance of all yeast ORF lengths ? ... 1991: confidence interval around ORF length. 1996: we can check the prediction ...
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Matching a sequence against a database (Fasta, BLAST) Multiple sequence alignment (ClustalX) ... Word matches require a perfect match over the whole word length. ...
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Guarantees to return the highest scoring alignment between two sequences. ... As discussed before, the number of possible paths increases exponentially with ...
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Laboratoire de Bioinformatique des G nomes et des R seaux ... H.pylori 1 composite. A. B. A^B. References. Marcotte, et al. (1999). Science 285(5428), 751-3. ...
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How many oligomers contain exactly a single occurrence of each monomer, for ... Permutations within a set - the factorial ... Number of distinct selections (orderless) ...
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With the advent of high-throughput methods, we dispose of ... ChIP (Chromatin Immunoprecipitation) on chip to detect protein-DNA binding. Mutant phenotypes. ...
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Normal fitting - yeast ORF lengths. The distribution does not fit a normal curve. Normal fitting with quartile estimates - yeast ORF lengths ...
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Note: the diagonal (covariance between a condition and itself) is the variance ... The values on the diagonal (distance between a condition and itself) are always 0. ...
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Colors represent 15 clusters obtained with K-means clustering. ... Coloring (optional) Adapted from Gilbert et al. (2000). Trends Biotech. 18(Dec), 487-495. ...
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coloring. Matrix. viewer. Processing. Clusters, Tree. Ordering ... Coloring (optional) Adapted from Gilbert et al. (2000). Trends Biotech. 18(Dec), 487-495. ...
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Laboratoire de Bioinformatique des G nomes et des R seaux (BiGRe) http://www.bigre.ulb.ac.be ... sporulation. mating type. Cell cycle. Temporal profiles of expression ...
