Ensmart PowerPoint PPT Presentations
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Data Mining in Ensembl with EnsMart Possible queries All genes from a candidate region Genes with a particular protein domain Members of a protein family Genes ...
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Data retrieval BioMart Export View Data sets on ftp site MySQL queries of databases Perl API access to databases Data Mining in Ensembl with EnsMart Possible queries
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Sequence Analysis (II) Yuh-Shan Jou ( ) jou@ibms.sinica.edu.tw Institute of Biomedical Sciences, Academia Sinica
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... in C. Some viewers have been written in Java (e.g. Apollo) ... Apollo ... Chromosomes 6,7,13,14, 20 and 22 contain manually curated genes from VEGA database ...
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Fugu-sg (ICMB) Ciona-sg (Temasek) Ensembl Open source. 11 of 45 ... human build 34, mouse, rat, Fugu,mosquito. adds annotation and links. automated process ...
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... 7.2. 1. Ensembl Web. Erin Pleasance. Canada's Michael Smith Genome Sciences Centre, Vancouver ... Information provided for each transcript individually ...
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Zebrafish Genome Resources Workshop. Mario Caccamo ... www.ncbi.nih.gov/genome/guide/zebrafish/ ZFIN ... Zebrafish Genome Resources Workshop - Dresden 2005 ...
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EB-eye searches all EBI databases. NCBI Entrez ... Using Boolean operators: gene AND regulation or cell AND (repression OR activation) ...
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A distributed data integration system based on query-optimized relational views. ... Single integrated' search interface to many in house databases ...
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Usage examples. System overview. Talk summary. Data access ... Usage examples. Candidate gene identification. SNPs for candidate genes. Microarray annotation ...
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Ensembl Database and Web Browser www'ensembl'org
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BeNeLux BioInformatics Conference 2006. Introduction (1) Phylogenetic patterns show presence/absence of genes over a certain set of species: ...
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Why do we need a database for toxicogenomics. How is it envisioned that this ... sequence is required to resolve discrepancies through automated bioinformatics ...
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Bioinformatics Werkbespreking 2006-11-07. 1 PhyloPat: phylogenetic pattern ... BeNeLux BioInformatics Conference 2006. Introduction (1) ...
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D couverte des sites de liaison dans des s quences ADN des eucaryotes pluricellulaires Etat de l art, valuation des outils existants Maximilian Haeusser
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... position on a chromosome and that codes for a specific function. ... Wii: weight of ancestral duplication; Wij: weight of ancestral conservation of i in j; ...
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ContigView of best in genome gene with associated evidence. Known gene (p53) Proteins aligned ... Identify novel exons ab initio using Genscan ... Exercises ...
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