901 Contig PPTs View free & download

Contig Assembly PowerPoint PPT Presentation

Contig Assembly - High throughput sequencing method that employs automated sequencing of ... 8 vertebrates (human, mouse, rat, fugu, zebrafish) 2 plants (arabadopsis, rice) ...

High throughput sequencing method that employs automated sequencing of ... 8 vertebrates (human, mouse, rat, fugu, zebrafish) 2 plants (arabadopsis, rice) ...

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A hierarchical approach to building contig scaffolds PowerPoint PPT Presentation

A hierarchical approach to building contig scaffolds - A hierarchical approach to building contig scaffolds. Mihai Pop. Dan Kosack ... un-related contigs 5,000-10,000 base ... node coloring problem (forward ...

A hierarchical approach to building contig scaffolds. Mihai Pop. Dan Kosack ... un-related contigs 5,000-10,000 base ... node coloring problem (forward ...

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b. The second round of global phrap assembly was done on April 1, 2002 on 77,022 Project ESTs. Of these, 70,074 were 5' ESTs and 6,948 were 3' ESTs. They were assembled into 11,758 contigs. - Distribution of research investigators by objective Objectives and coordination structure Obj. 6 Genome structure & evolution The Structure and Function

Distribution of research investigators by objective Objectives and coordination structure Obj. 6 Genome structure & evolution The Structure and Function

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Ophiobolus heterostrophus PowerPoint PPT Presentation

Ophiobolus heterostrophus - ... 1 23,099 contig 1 contig 2 contig 5 contig 4 contig 3 %AT 74 50 78 64 71 23,099 kb Scaffold 4FP is at Tox1A PKS1 PKS1 = polyketide synthase Functional analysis ...

... 1 23,099 contig 1 contig 2 contig 5 contig 4 contig 3 %AT 74 50 78 64 71 23,099 kb Scaffold 4FP is at Tox1A PKS1 PKS1 = polyketide synthase Functional analysis ...

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Growing and Making FISH Probes PowerPoint PPT Presentation

Growing and Making FISH Probes - Human genome project. Clones assembled to produce a contig. Fragment size in a BAC library ... Back to the human genome project... Sequence Tagged Site. ...

Human genome project. Clones assembled to produce a contig. Fragment size in a BAC library ... Back to the human genome project... Sequence Tagged Site. ...

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Bioinformatics: Buzzword or Discipline (???) PowerPoint PPT Presentation

Bioinformatics: Buzzword or Discipline (???) - Genes make up. only 3% of the genome. 30,000. Genome Sizes. Human 3.0 x 109 base pairs ... Expected number of contigs first increases, then decreases with coverage. ...

Genes make up. only 3% of the genome. 30,000. Genome Sizes. Human 3.0 x 109 base pairs ... Expected number of contigs first increases, then decreases with coverage. ...

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DNA Sequencing PowerPoint PPT Presentation

DNA Sequencing - Modern DNA sequence use PCR technology in sequencing. One primer PCR ... Shotgun Sequencing. Involves fragment assembly using computer algorithms. Contigs ...

Modern DNA sequence use PCR technology in sequencing. One primer PCR ... Shotgun Sequencing. Involves fragment assembly using computer algorithms. Contigs ...

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Genome Sequence determination PowerPoint PPT Presentation

Genome Sequence determination - Determining the full nucleotide sequence of one strain of an organism ... Assemble the reads by using phred/phrap/consed softwares. Contig 1. Contig 2. Contig 3 ...

Determining the full nucleotide sequence of one strain of an organism ... Assemble the reads by using phred/phrap/consed softwares. Contig 1. Contig 2. Contig 3 ...

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UMR Science et Technologie du Lait et de luf PowerPoint PPT Presentation

UMR Science et Technologie du Lait et de luf - Assemblage en 326 contigs (3x) Banque plasmidique d'inserts de 8 kb et une banque miniBAC ... S quen age, assemblage : G noscope : 306 contigs (9x) La strat gie de s quen age ...

Assemblage en 326 contigs (3x) Banque plasmidique d'inserts de 8 kb et une banque miniBAC ... S quen age, assemblage : G noscope : 306 contigs (9x) La strat gie de s quen age ...

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FPGA Stuff State Machines and VGA Timing project PowerPoint PPT Presentation

FPGA Stuff State Machines and VGA Timing project - module binary (CLOCK, RESET, A, B, C, D, E, SINGLE, MULTI, CONTIG) ... State register | d flip-flops. 12. The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL ...

module binary (CLOCK, RESET, A, B, C, D, E, SINGLE, MULTI, CONTIG) ... State register | d flip-flops. 12. The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL ...

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Assembly of the sheep genome and identification of SNPs using 454 and Illumina sequencing and design of the Illumina Ovine SNP50 BeadChip PowerPoint PPT Presentation

Assembly of the sheep genome and identification of SNPs using 454 and Illumina sequencing and design of the Illumina Ovine SNP50 BeadChip - Using hits to bovine genome in bins of 1 Mb at a time use Newbler to build sheep ... order of sheep contigs is heavily dependant on the bovine genome assembly ...

Using hits to bovine genome in bins of 1 Mb at a time use Newbler to build sheep ... order of sheep contigs is heavily dependant on the bovine genome assembly ...

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Selecting an initial pool of ACEGs for further analysis PowerPoint PPT Presentation

Selecting an initial pool of ACEGs for further analysis - ... an initial pool of ACEGs for ... to the Check-Pool. 3825 Acegs (7432 ... REMAINING POOL (2364 ACEGs) BLAST analysis of contigs (Identity 90% and ...

... an initial pool of ACEGs for ... to the Check-Pool. 3825 Acegs (7432 ... REMAINING POOL (2364 ACEGs) BLAST analysis of contigs (Identity 90% and ...

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Questions for Chapter 17 and 18: PowerPoint PPT Presentation

Questions for Chapter 17 and 18: - ... the order of and distance between sites at which rare-cutter enzymes cleave. Macrorestriction maps: Top-down mapping. Contig Maps: Bottom-up Mapping ...

... the order of and distance between sites at which rare-cutter enzymes cleave. Macrorestriction maps: Top-down mapping. Contig Maps: Bottom-up Mapping ...

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Lecture - Successful cloning of larger genomes is based upon STS/contig alignments. ... Gene Isolation by positional cloning: Example of the gene for CF. ...

Successful cloning of larger genomes is based upon STS/contig alignments. ... Gene Isolation by positional cloning: Example of the gene for CF. ...

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Identifying Patterns in DNA Change PowerPoint PPT Presentation

Identifying Patterns in DNA Change - CENSOR used to get substitution data. http://www.girinst.org/Censor_Server. ... CENSOR Alignments. ALUY 11 282 CONTIG-1P1 317456 317723 0.88 0.10 1.53 272 206.52 ...

CENSOR used to get substitution data. http://www.girinst.org/Censor_Server. ... CENSOR Alignments. ALUY 11 282 CONTIG-1P1 317456 317723 0.88 0.10 1.53 272 206.52 ...

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Status report on gap closure of the human chromosome 5 BAC map PowerPoint PPT Presentation

Status report on gap closure of the human chromosome 5 BAC map - Gap status and steps used to close gaps. Status of the centromere and ... Jan-Fang Cheng. Joint Genome Institute. May 24, 2001. Authentication of C5 BAC contigs ...

Gap status and steps used to close gaps. Status of the centromere and ... Jan-Fang Cheng. Joint Genome Institute. May 24, 2001. Authentication of C5 BAC contigs ...

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Jahn Lab, Dept. of Plant Breeding, Cornell Objectives Years 24 1.Generate a BAC library from Capsicu PowerPoint PPT Presentation

Jahn Lab, Dept. of Plant Breeding, Cornell Objectives Years 24 1.Generate a BAC library from Capsicu - ... contig through L locus in Capsicum and assess homology to R7/potato, I2/tomato ... TG105 ( 1 cM from I2 in tomato) Is not polymorphic in our cross, ...

... contig through L locus in Capsicum and assess homology to R7/potato, I2/tomato ... TG105 ( 1 cM from I2 in tomato) Is not polymorphic in our cross, ...

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The Complete Genome Sequence of E' coli 1997 PowerPoint PPT Presentation

The Complete Genome Sequence of E' coli 1997 - Identify genes, operons, regulatory sites, mobile DNA, repeats ... Stitch contigs together to form sequence. Build sequence from fragments ...

Identify genes, operons, regulatory sites, mobile DNA, repeats ... Stitch contigs together to form sequence. Build sequence from fragments ...

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$Supplementary Fig. 1. Wide-angle x-ray diffractogram of Crypthecodinium cohnii starch. Diffraction peaks at 2q (Bragg angle) values of 9.9 PowerPoint PPT Presentation$

Supplementary Fig. 1. Wide-angle x-ray diffractogram of Crypthecodinium cohnii starch. Diffraction peaks at 2q (Bragg angle) values of 9.9 - Guillardia MRRSVLSAAA VLSLSLSLLS LTPSNASTGV SSFSSSHRIP SLTRSALRLS ... theta (CAH04621) and Heterocapsa triquetra (EST contig of : DT386072 and DT385740) ...

Guillardia MRRSVLSAAA VLSLSLSLLS LTPSNASTGV SSFSSSHRIP SLTRSALRLS ... theta (CAH04621) and Heterocapsa triquetra (EST contig of : DT386072 and DT385740) ...

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GOPET: A tool for automated predictions of Gene Ontology terms PowerPoint PPT Presentation

GOPET: A tool for automated predictions of Gene Ontology terms - Gene product prediction is fraught with challenges. Sequence errors ... Compared with GOPET using eight annotated Xenopus laevis contig sequences ...

Gene product prediction is fraught with challenges. Sequence errors ... Compared with GOPET using eight annotated Xenopus laevis contig sequences ...

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Genome Sciences Centre PowerPoint PPT Presentation

Genome Sciences Centre - With SSAKE, we demonstrated that de novo genome assembly of large contigs using ... the discovery of molecules involved in secondary metabolites biosynthesis. ...

With SSAKE, we demonstrated that de novo genome assembly of large contigs using ... the discovery of molecules involved in secondary metabolites biosynthesis. ...

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BioRuby???????BLAST????????? PowerPoint PPT Presentation

BioRuby???????BLAST????????? - ... B830049N13|PX00073P19|1106 contigs=2 ver=1 seqid=24417 62 3e-08 ri|0610005A07|R000001A15|1277 contigs=2 ver=1 seqid=2 Length = 1277 Score ...

... B830049N13|PX00073P19|1106 contigs=2 ver=1 seqid=24417 62 3e-08 ri|0610005A07|R000001A15|1277 contigs=2 ver=1 seqid=2 Length = 1277 Score ...

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Aucun titre de diapositive PowerPoint PPT Presentation

Aucun titre de diapositive - Assemblage en une seule mol cule circulaire avec ' trous ' ... 8 autres contigs non utilis s dans assemblage. plasmide pSx267 29,5 kb OK. http://www. ...

Assemblage en une seule mol cule circulaire avec ' trous ' ... 8 autres contigs non utilis s dans assemblage. plasmide pSx267 29,5 kb OK. http://www. ...

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DNA Sequencing - DNA Sequencing Lecture 9, Tuesday April 29, 2003

DNA Sequencing Lecture 9, Tuesday April 29, 2003

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??(Penaeus%20monodon)??????? - : :

: :

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Assembling Sequences Using Trace Signals and Additional Sequence Information PowerPoint PPT Presentation

Assembling Sequences Using Trace Signals and Additional Sequence Information - Title: Assembling Sequences using additional information Author: Pre-installed Last modified by: Pre-installed Created Date: 9/16/1999 2:41:41 PM Document ...

Title: Assembling Sequences using additional information Author: Pre-installed Last modified by: Pre-installed Created Date: 9/16/1999 2:41:41 PM Document ...

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Tutorial for the Genome Browser for Soybean: by David A. Lightfoot Center for Excellence in Soybean Research, Teaching and Outreach Genomics PowerPoint PPT Presentation

Tutorial for the Genome Browser for Soybean: by David A. Lightfoot Center for Excellence in Soybean Research, Teaching and Outreach Genomics - Tutorial for the Genome Browser for Soybean: by David A. Lightfoot. Center for Excellence in ... Ideotype of MLG G Chromosome 18. 6.66 microns euchromatin ...

Tutorial for the Genome Browser for Soybean: by David A. Lightfoot. Center for Excellence in ... Ideotype of MLG G Chromosome 18. 6.66 microns euchromatin ...

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The Zebrafish Genome Sequencing Project Bioinformatics resources PowerPoint PPT Presentation

The Zebrafish Genome Sequencing Project Bioinformatics resources - Kerstin Howe, Mario Caccamo, Ian Sealy The Zebrafish Genome Sequencing Project Bioinformatics resources mis-joins and other complications change of strategy from Zv2 ...

Kerstin Howe, Mario Caccamo, Ian Sealy The Zebrafish Genome Sequencing Project Bioinformatics resources mis-joins and other complications change of strategy from Zv2 ...

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SRB Genome - a. Broughton et al. (2003) Beans (Phaseolus spp.) model ... (Brassicaceae Repeats) (Fabaceae Repeats) http://plantrepeats.plantbiology.msu.edu/search.html ...

a. Broughton et al. (2003) Beans (Phaseolus spp.) model ... (Brassicaceae Repeats) (Fabaceae Repeats) http://plantrepeats.plantbiology.msu.edu/search.html ...

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Whole Genome Assembly Microarray analysis - Whole Genome Assembly Microarray analysis

Whole Genome Assembly Microarray analysis

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Vector NTI - Click your name on my web page on the class genes page ... Highlight Sequence and Cut (scissors) Now you see little red arrows for cut sequences. ...

Click your name on my web page on the class genes page ... Highlight Sequence and Cut (scissors) Now you see little red arrows for cut sequences. ...

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Double-Ended Shotgun Sequencing of PA14 PowerPoint PPT Presentation

Double-Ended Shotgun Sequencing of PA14 - Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02

Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02

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Whole Genome Assembly Microarray analysis - Human, Mouse, Rat, Dog, Chimpanzee.. Many Prokaryotes (One can be sequenced in a day) ... DNA signals. Gene Finding. Assembly. Other static analysis is possible ...

Human, Mouse, Rat, Dog, Chimpanzee.. Many Prokaryotes (One can be sequenced in a day) ... DNA signals. Gene Finding. Assembly. Other static analysis is possible ...

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Genome Assembly PowerPoint PPT Presentation

Genome Assembly - ... .00 51.00 377044.00 23012.00 196.00 80.00 62631932.00 275273.00 40135.00 325.00 138833812.00 138833812.00 275273.00 24566.00 46535500.00 31.00 3796782.00 15553 ...

... .00 51.00 377044.00 23012.00 196.00 80.00 62631932.00 275273.00 40135.00 325.00 138833812.00 138833812.00 275273.00 24566.00 46535500.00 31.00 3796782.00 15553 ...

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SEQUENCING-related topics PowerPoint PPT Presentation

SEQUENCING-related topics chain-termination sequencing the polymerase chain reaction (PCR) cycle sequencing large scale sequencing stefanie.hartmann @ unc.edu

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Mouse Genome Sequencing PowerPoint PPT Presentation

Mouse Genome Sequencing - 2) Green, ED, Strategies for the systematic sequencing of complex genomes. ... Of the clones in the human genome tile path, 88% are collinear with the mouse BAC map. ...

2) Green, ED, Strategies for the systematic sequencing of complex genomes. ... Of the clones in the human genome tile path, 88% are collinear with the mouse BAC map. ...

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Genome Assembly - ... can assembly of shot gun sequencing be performed? Requirements: ... Actively repeats case genome rearrangements. Algorithmic Foundations of Computational Biology ...

... can assembly of shot gun sequencing be performed? Requirements: ... Actively repeats case genome rearrangements. Algorithmic Foundations of Computational Biology ...

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Cloning and Sequencing Explorer Series PowerPoint PPT Presentation

Cloning and Sequencing Explorer Series - Title: PowerPoint Presentation Author: ken shiokari Last modified by: Administrator Created Date: 6/29/2004 5:54:37 PM Document presentation format

Title: PowerPoint Presentation Author: ken shiokari Last modified by: Administrator Created Date: 6/29/2004 5:54:37 PM Document presentation format

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DNA Sequencing

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Genetic Map to Physical Map PowerPoint PPT Presentation

Genetic Map to Physical Map - Genetic Map to Physical Map This activity is intended to supplement the workshop session entitled Integrating the Genetic and Physical Maps of Maize .

Genetic Map to Physical Map This activity is intended to supplement the workshop session entitled Integrating the Genetic and Physical Maps of Maize .

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V4 - V4 Analyse von Genomsequenzen - Gene identifizieren z.B. Hidden Markov Modelle - Transkriptionsfaktorbindestellen identifizieren Position Specific Scoring ...

V4 Analyse von Genomsequenzen - Gene identifizieren z.B. Hidden Markov Modelle - Transkriptionsfaktorbindestellen identifizieren Position Specific Scoring ...

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Novel multi-platform next generation assembly methods for mammalian genomes PowerPoint PPT Presentation

Novel multi-platform next generation assembly methods for mammalian genomes - Novel multi-platform next generation assembly methods for mammalian genomes The Baylor College of Medicine, Australian Government and University of Connecticut teamed ...

Novel multi-platform next generation assembly methods for mammalian genomes The Baylor College of Medicine, Australian Government and University of Connecticut teamed ...

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Graph Algorithms and Fragment Assembly PowerPoint PPT Presentation

Graph Algorithms and Fragment Assembly - Graph Algorithms in Bioinformatics Outline Introduction to Graph Theory Eulerian & Hamiltonian Cycle Problems Benzer Experiment and Interval Graphs DNA Sequencing The ...

Graph Algorithms in Bioinformatics Outline Introduction to Graph Theory Eulerian & Hamiltonian Cycle Problems Benzer Experiment and Interval Graphs DNA Sequencing The ...

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Metagenome analysis PowerPoint PPT Presentation

Metagenome analysis - Title: Title goes here Author: Cheryl Ventimiglia Last modified by: nivanova Created Date: 4/28/2005 9:01:06 PM Document presentation format: On-screen Show

Title: Title goes here Author: Cheryl Ventimiglia Last modified by: nivanova Created Date: 4/28/2005 9:01:06 PM Document presentation format: On-screen Show

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DNA sequence evolution in Sunflower and Lettuce PowerPoint PPT Presentation

DNA sequence evolution in Sunflower and Lettuce - ... sequenced from two species: Lactuca serriola (wild) and L. sativa (cultivated) ... Suc-rose. starch. lignin. Cellu-lose. Pheny- lpropanoid. lipid-Ls. lipid ...

... sequenced from two species: Lactuca serriola (wild) and L. sativa (cultivated) ... Suc-rose. starch. lignin. Cellu-lose. Pheny- lpropanoid. lipid-Ls. lipid ...

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Stuff to Do - Title: PowerPoint Presentation Author: Jeff Young Last modified by: Jeff Young Created Date: 5/6/2004 7:34:37 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: Jeff Young Last modified by: Jeff Young Created Date: 5/6/2004 7:34:37 PM Document presentation format: On-screen Show

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Puccinia graminis genome project - Puccinia graminis genome project

Puccinia graminis genome project

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Graph Algorithms in Bioinformatics PowerPoint PPT Presentation

Graph Algorithms in Bioinformatics - Demonstrated internal structure of the gene. Seymour Benzer, 1950s ... Interval graph structure reveals whether DNA is linear or branched DNA ...

Demonstrated internal structure of the gene. Seymour Benzer, 1950s ... Interval graph structure reveals whether DNA is linear or branched DNA ...

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De%20novo%20bacterial%20genome%20sequencing:%20millions%20of%20very%20short%20reads%20assembled%20on%20a%20desktop%20computer PowerPoint PPT Presentation

De%20novo%20bacterial%20genome%20sequencing:%20millions%20of%20very%20short%20reads%20assembled%20on%20a%20desktop%20computer - David Hernandez, Patrice Fran ois, Laurent Farinelli, Magne ster s, ... Reads and their reverse complements are considered the same read merged into the ...

David Hernandez, Patrice Fran ois, Laurent Farinelli, Magne ster s, ... Reads and their reverse complements are considered the same read merged into the ...

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DNA Sequencing - Start at primer (restriction site) Grow DNA chain ... ARD, CRB ? A. R. B. CS262 Lecture 9, Win06, Batzoglou. Sequencing and Fragment Assembly ...

Start at primer (restriction site) Grow DNA chain ... ARD, CRB ? A. R. B. CS262 Lecture 9, Win06, Batzoglou. Sequencing and Fragment Assembly ...

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Sequencing and Sequence Assembly PowerPoint PPT Presentation

Sequencing and Sequence Assembly - A: To sequence a DNA molecule is to obtain the string of bases that it contains. ... assembly: detect 'tangles' indicative of repeats (Pevzner, Tang, Waterman 2001) ...

A: To sequence a DNA molecule is to obtain the string of bases that it contains. ... assembly: detect 'tangles' indicative of repeats (Pevzner, Tang, Waterman 2001) ...

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Figure 1 Timeline of largescale genomic analyses. Shown are selected components of work on PowerPoint PPT Presentation

Figure 1 Timeline of largescale genomic analyses. Shown are selected components of work on - Several non-vertebrate model organisms (red), the mouse (blue) and the ... no duplication subsequent to speciation that might make the orthology ambiguous. ...

Several non-vertebrate model organisms (red), the mouse (blue) and the ... no duplication subsequent to speciation that might make the orthology ambiguous. ...

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DNA Sequencing - Make a map of the locations of each clone relative to one another ... Build a very redundant library of BACs with sequenced clone-ends (cheap to build) ...

Make a map of the locations of each clone relative to one another ... Build a very redundant library of BACs with sequenced clone-ends (cheap to build) ...

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Paul Medvedev PowerPoint PPT Presentation

Paul Medvedev - Maximum Likelihood Genome Assembly Paul Medvedev Michael Brudno Bioinformatics Algorithms Presented by Md. Tanvir Al Amin, Md. Shaifur Rahman Khalid Mahmood

Maximum Likelihood Genome Assembly Paul Medvedev Michael Brudno Bioinformatics Algorithms Presented by Md. Tanvir Al Amin, Md. Shaifur Rahman Khalid Mahmood

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INDIAN INITIATIVE FOR RICE GENOME SEQUENCING PowerPoint PPT Presentation

INDIAN INITIATIVE FOR RICE GENOME SEQUENCING - Reverse BAC end sequence of 52B22. Orientation of BAC Clones. 89M05. 52B22. 85G12. 1. 2 ... Hypothetical 411. Known genes = Pi ta, Pib, Xa2, Xa21, RGAs, Yr10 , ...

Reverse BAC end sequence of 52B22. Orientation of BAC Clones. 89M05. 52B22. 85G12. 1. 2 ... Hypothetical 411. Known genes = Pi ta, Pib, Xa2, Xa21, RGAs, Yr10 , ...

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BS961 - BS961

BS961

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Contig PowerPoint PPT Presentations