http://creativecommons.org/licenses/by-sa/2.0/ BNFO 602 Lecture 1 Usman Roshan Phylogenetics Study of how species relate to each other Nothing in biology makes ...
PCA, population structure, and K-means clustering. BNFO 601. Publicly ... from Cambodia, 15 from Siberia, 49 from China, and 16 from Japan; 459,188 SNPs ...
First, we compute a profile of the alignment. We then align the profile to the sequence using standard ... Pi is the background probability of nucleotide i ...
Some of the s are based upon material by David Wishart of ... 8 vertebrates (human, mouse, rat, fugu, zebrafish) 3 plants (arabadopsis, rice, poplar) ...