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Components of an Ontology. Constraints and other meta information about relations. Slot Product: ... 'Physical', 'Abstract', 'Structure', 'Substance' useful for ...
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Model phenotype data in a structured manner to allow for ... Diseases (ICD), SNOMED, Medical Subheadings (MeSH), National Cancer Institute (NCI) Diseases ...
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BOF Sunday. 30 July 2004. 7th BioOntologies Workshop. 20. BioPAX Supporting Groups. Groups ... Low Detail High Detail. 30 July 2004. 7th BioOntologies Workshop. 23 ...
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International Society for the History, Philosophy and Social Studies of Biology ... bio-ontology can then be linked to the molecular databases' (Bard and Rhee 2004) ...
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Ontologie Stefan Schulz Institut f r Medizinische Informatik, Statistik und Dokumentation Medizinische Universit t Graz
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the encouragement of collaborations in the field of bioinformatics. ... Dr Christoph Sensen, Canadian Bioinformatics Resource, National Research Council ...
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Knowledge Representation Chapter 10 Outline KR Introduction Ontological Engineering Categories and Objects Actions, Situations, and Events Mental Events and Mental ...
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Clearly specified and delineated content. Definitions ... Relation Ontology (RO) Protein Ontology Consortium (under development) protein types and ...
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Pax Terminologica
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Ontology Views An Update A BISTI Collaborative RO1 with the National Center for Biomedical Ontology James F. Brinkley, PI Structural Informatics Group
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Title: PowerPoint Presentation Last modified by: patla Created Date: 1/1/1601 12:00:00 AM Document presentation format: On-screen Show Other titles
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Title: PowerPoint Presentation Author: Suzanna Lewis Last modified by: Suzanna Lewis Created Date: 9/7/2005 1:23:00 PM Document presentation format
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Introduction to Bio-Ontologies Barry Smith http://ontology.buffalo.edu/smith *
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ncor.buffalo.edu
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The Evaluation of Ontologies Editorial Review vs. Democratic Ranking Barry Smith *
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NCBO SPARQL Endpoint Trish Whetzel Outreach Coordinator Our backend relies on predicate indexing mostly. and most likely queries with unbound ?p will run slow.
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Title: Caveats on Knowledge Discovery and Data Mining (KDDM) for Bio-Terrorism Detection Author: Powerpt Last modified by: Anand Kumar Created Date
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John Fox (Director, OpenClinical) As a user and teacher of ontological methods in medicine and engineering I have for years warned my students that the design of ...
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Continuant. Occurrent. Independent. Continuant. Dependent. Continuant. Quality. Disposition. Process. Role. Realizable. Dependent. Continuant
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Ontology for Biomedical Investigations. OBI is about capturing all aspects of an investigation (study, experiment, etc.) OBI is part of a group that follows the same ...
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Face-to-Face Meeting Semantic Web for Healthcare and Life Sciences Interest Group http://www.w3.org/2001/sw/hcls/ W3C HCLS chairs, Eric Neumann - Clinical Semantics Group
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The Joy of Ontology Suzanna Lewis SMI Colloquium April 20th, 2006 Sections Why make an ontology What is an ontology How to create an ontology Logically Technically ...
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The Gene Regulation Ontology (GRO): - Design Principles and Use Cases - Elena BEISSWANGERa, Vivian LEEb, Jung-Jae KIMb, Dietrich REBHOLZ-SCHUHMANNb, Andrea ...
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Title: Incremental Maintenance of Materialized OQL Views Author: Norman Paton Last modified by: norm Created Date: 11/4/2000 11:38:08 AM Document presentation format
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Phenote Mark Gibson Berkeley Bioinformatics and Ontology Project (BBOP) National Center for Biomedical Ontologies(NCBO) Lawrence Berkeley National Lab
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Phenote Mark Gibson Berkeley Bioinformatics and Ontology Project (BBOP) National Center for Biomedical Ontologies(NCBO) Lawrence Berkeley National Lab
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Why we need the OBO Core
- Why we need the OBO Core Michael Ashburner, Suzanna Lewis and Barry Smith
Why we need the OBO Core Michael Ashburner, Suzanna Lewis and Barry Smith
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Ontology and RadLex Robert Arp, Ph.D. Ontology Research Group (ORG) www.org.buffalo.edu National Center for Biomedical Ontology (NCBO) www.bioontology.org
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Title: Open Innovation Author: kblanc Last modified by: scott Created Date: 1/19/2005 11:52:50 AM Document presentation format: On-screen Show (4:3)
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Vet Med Informatics Lab, Virginia Tech The SWO Project: A Case Study of Applying Agile Ontology Engineering Methods in Community Driven Ontologies.
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Where do SO and RNAO meet. How SO and RNAO can work together. If ... E.g. Does the CDS include the stop codon? An annotation captures what we know about a gene ...
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... blood culture was positive for methicillin-resistant Staphylococcus aureus (MRSA) ... 005.0 STAPH FOOD POISONING. 005.1 BOTULISM. 005.2 FOOD POIS D/T C. PERFRIN ...
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The patient was generally well until about one half hour prior to arrival in the ... Chest X-ray Left upper lobe infiltrate, left ventricular hypertrophy ...
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The Future of Biomedical Informatics Barry Smith University at Buffalo http://ontology.buffalo.edu/smith * * * * * * * A strategy for translational medicine Sj bl m ...
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Title: Ontologies for biological annotation Author: Chris Mungall Last modified by: Chris Mungall Created Date: 12/5/2005 6:34:38 AM Document presentation format
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Clinical and Translational Science Awards (CTSA) ... http://www.ebi.ac.uk/GOA/ Integration applications. Based on shared annotations ...
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BioPortal and NCBO Web services Trish Whetzel Outreach Coordinator National Center for Biomedical Ontology Mission To create software for the application of ...
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Ontology: Not Just for Philosophers Anymore Robert Arp, Ph.D. - The Ontology Research Group (ORG) www.org.buffalo.edu - The National Center for Biomedical Ontology (NCBO)
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... Business Case: e.g., Markle Foundation, Esther Dyson, Perot Systems, Oracle, etc. ... Participant systems remain autonomous and independent ...
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People are goal-directed to tell the truth (just look at the virtuous person) ... God, who is Love, graciously creates and sustains reality ...
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Ontology Enables Large-Scale Biomedical Science Slide 8 GO Consortium Need for annotation of genome sequences GO Representation: Tree or Network? Slide 12 ...
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Huge growth in online biomedical data sets ... Zebrafish shh & oep genes. Query: Zebrafish oep gene annotations show nearly all defects seen in human h.p. ...
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In Intl. Conference on Deductive and Object-Oriented ... Serge Abiteboul, Richard Hull, and Victor Vianu. Foundations of Databases. Addison Wesley, 1995. ...
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Why we build anatomy ontologies (AOs) ... chick. mouse. Queries for genes in similar structures. Panganiban et al., PNAS, 1997 ...
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Motivation for formalized phenotype description and ... Zebrafish. shh. Zebrafish. oep. Who should use PATO? Originally: model organism mutant phenotypes ...
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Obol is a system for discovering and reasoning over hidden ... Robert Stevens. Phillip Lord. J Michael Cherry. Michael Ashburner. all the GO Consortium ...
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Towards An Integrated NCBC Computational Tools and Services Framework Ivo.Dinov@loni.ucla.edu http://www.ccb.ucla.edu Low Hanging Fruit? Who s picking the Fruits?
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Application interface -windows, mice, menus ... windows, icons, menus, pointers(mouse) Interface Design Conventions are adopted ...
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Ontologies and data integration in biomedicine. Olivier Bodenreider. Lister Hill ... Ontology-centric integration and navigation of the dengue literature ...
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Things that occur during time ... that resemble flies from a distance' ... A tangible stuff composed of two or more different constituents which have been mixed. ...
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Molecular entities which are. used to intervene in the. process of living ... cellular components, molecular. functions, biological processes in all organisms ...
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